Wall clock time and date at job start Tue Mar 31 2020 17:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35663 * 125.69442 * 2 1 4 4 Cl 1.73597 * 125.58385 * 359.97345 * 3 2 1 5 5 C 1.35723 * 108.82849 * 179.97438 * 3 2 1 6 6 Cl 1.73600 * 126.06070 * 179.97438 * 5 3 2 7 7 C 1.39785 * 107.87598 * 0.22493 * 5 3 2 8 8 C 1.37799 * 125.69083 * 179.97438 * 2 1 3 9 9 C 1.46542 * 126.22666 * 0.02562 * 8 2 1 10 10 O 1.21719 * 119.99931 * 5.36715 * 9 8 2 11 11 N 1.34778 * 120.00073 * 185.36299 * 9 8 2 12 12 C 1.46499 * 119.99794 * 185.18066 * 11 9 8 13 13 H 1.09000 * 110.89147 * 31.11431 * 12 11 9 14 14 C 1.55158 * 111.00762 * 155.00047 * 12 11 9 15 15 C 1.54320 * 102.94429 * 153.57118 * 14 12 11 16 16 N 1.47017 * 107.27178 * 337.81053 * 15 14 12 17 17 C 1.36938 * 125.64535 * 178.92265 * 16 15 14 18 18 H 1.08003 * 120.00107 * 180.02562 * 17 16 15 19 19 C 1.38810 * 120.00453 * 0.02562 * 17 16 15 20 20 N 1.31622 * 119.99654 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00341 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47026 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47237 * 119.99603 * 21 19 17 24 24 H 1.48496 * 109.47281 * 239.99738 * 21 19 17 25 25 C 1.47425 * 108.70619 * 358.93800 * 16 15 14 26 26 H 1.08998 * 109.46658 * 85.90457 * 1 2 3 27 27 H 1.08996 * 109.47579 * 205.90145 * 1 2 3 28 28 H 1.09005 * 109.46898 * 325.90882 * 1 2 3 29 29 H 1.08001 * 126.44180 * 179.77304 * 7 5 3 30 30 H 0.96999 * 120.00357 * 5.17544 * 11 9 8 31 31 H 1.09001 * 110.71660 * 271.93875 * 14 12 11 32 32 H 1.09003 * 110.72002 * 35.02947 * 14 12 11 33 33 H 1.09007 * 109.88017 * 97.22786 * 15 14 12 34 34 H 1.09001 * 109.88431 * 218.38602 * 15 14 12 35 35 H 0.97006 * 119.99992 * 180.02562 * 20 19 17 36 36 H 1.09003 * 110.36457 * 265.29252 * 25 16 15 37 37 H 1.08991 * 110.36575 * 142.97147 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2566 1.1018 0.0000 4 17 1.6994 2.7459 -0.0007 5 6 3.5555 0.7080 0.0006 6 17 4.9405 1.7545 0.0002 7 6 3.5801 -0.6896 -0.0043 8 6 2.2690 -1.1192 0.0005 9 6 1.8141 -2.5122 0.0006 10 8 0.6276 -2.7650 -0.0984 11 7 2.7096 -3.5135 0.1102 12 6 2.2689 -4.9060 -0.0035 13 1 1.4137 -4.9895 -0.6742 14 6 3.4321 -5.8213 -0.4690 15 6 3.0411 -7.1979 0.1087 16 7 2.1206 -6.9556 1.2292 17 6 1.5261 -7.9213 1.9967 18 1 0.8619 -7.6395 2.8003 19 6 1.7771 -9.2626 1.7420 20 7 2.5862 -9.6061 0.7622 21 14 0.9656 -10.5799 2.7885 22 1 0.1075 -9.9370 3.8159 23 1 0.1330 -11.4552 1.9248 24 1 2.0114 -11.3949 3.4573 25 6 1.9433 -5.5008 1.3893 26 1 -0.3632 0.0734 -1.0250 27 1 -0.3634 -0.9244 0.4489 28 1 -0.3633 0.8511 0.5760 29 1 4.4601 -1.3157 -0.0086 30 1 3.6459 -3.3122 0.2643 31 1 3.4810 -5.8595 -1.5572 32 1 4.3806 -5.4810 -0.0534 33 1 2.5443 -7.7937 -0.6571 34 1 3.9310 -7.7165 0.4654 35 1 2.7613 -10.5434 0.5839 36 1 2.6351 -5.1145 2.1379 37 1 0.9148 -5.2725 1.6684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014635623.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:46 Heat of formation + Delta-G solvation = 11.638338 kcal Electronic energy + Delta-G solvation = -23257.190216 eV Core-core repulsion = 19508.307336 eV Total energy + Delta-G solvation = -3748.882880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.72786 -40.58307 -38.81669 -37.88765 -37.51259 -35.78487 -34.22344 -33.54229 -31.24804 -30.38735 -28.60202 -27.66870 -26.47516 -24.12717 -22.26990 -22.09265 -21.59496 -20.93440 -19.33275 -18.79765 -17.63710 -17.18151 -17.12503 -16.67443 -16.05672 -15.85729 -15.56271 -15.39962 -14.86544 -14.60624 -14.49568 -14.15961 -14.13034 -13.94197 -13.69640 -13.34385 -12.96255 -12.93513 -12.79763 -12.52095 -12.45071 -12.40008 -12.12475 -11.99008 -11.96525 -11.80787 -11.56527 -11.15369 -10.71559 -10.22243 -9.92251 -9.35966 -8.90569 -7.85882 -5.21569 0.06632 0.32512 0.99360 1.07555 1.46715 1.47444 1.57710 1.65642 2.12092 2.24619 2.51047 3.33094 3.46787 3.64916 3.69083 3.87713 3.91647 4.05614 4.22381 4.23200 4.34297 4.54090 4.58250 4.65305 4.74417 4.89964 5.00089 5.05843 5.09092 5.41707 5.44012 5.48542 5.56753 5.66741 5.76193 6.19854 6.45394 7.07145 7.10882 7.75918 8.38570 9.24275 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.002410 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.760450 B =11614.706782 C =12247.291610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.399 5.399 3 C 0.089 3.911 4 Cl 0.014 6.986 5 C -0.109 4.109 6 Cl -0.024 7.024 7 C -0.106 4.106 8 C -0.031 4.031 9 C 0.590 3.410 10 O -0.574 6.574 11 N -0.685 5.685 12 C 0.151 3.849 13 H 0.082 0.918 14 C -0.128 4.128 15 C 0.183 3.817 16 N -0.626 5.626 17 C -0.244 4.244 18 H 0.077 0.923 19 C -0.063 4.063 20 N -0.948 5.948 21 Si 0.978 3.022 22 H -0.269 1.269 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.128 3.872 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.191 0.809 30 H 0.419 0.581 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.014 0.986 34 H 0.017 0.983 35 H 0.248 0.752 36 H 0.033 0.967 37 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 26.121 -3.757 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.074 5.074 3 C -0.055 4.055 4 Cl 0.043 6.957 5 C -0.144 4.144 6 Cl 0.005 6.995 7 C -0.132 4.132 8 C -0.145 4.145 9 C 0.378 3.622 10 O -0.455 6.455 11 N -0.336 5.336 12 C 0.045 3.955 13 H 0.100 0.900 14 C -0.166 4.166 15 C 0.058 3.942 16 N -0.353 5.353 17 C -0.373 4.373 18 H 0.095 0.905 19 C -0.256 4.256 20 N -0.597 5.597 21 Si 0.806 3.194 22 H -0.193 1.193 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.001 3.999 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.208 0.792 30 H 0.258 0.742 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.032 0.968 34 H 0.036 0.964 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.932 25.936 -3.822 26.287 hybrid contribution -0.150 -0.696 0.573 0.914 sum 1.782 25.240 -3.249 25.510 Atomic orbital electron populations 1.22576 0.73689 1.06413 1.05532 1.43914 1.08127 1.03248 1.52104 1.20790 0.89176 0.83054 1.12517 1.98413 1.89791 1.10436 1.97059 1.19683 0.86764 0.92023 1.15911 1.98351 1.38774 1.64943 1.97468 1.21531 0.95766 0.92515 1.03354 1.19853 0.89995 0.86896 1.17768 1.16966 0.85417 0.83679 0.76116 1.90821 1.17450 1.85038 1.52192 1.45364 1.11866 1.04353 1.72004 1.21864 0.98029 0.79055 0.96560 0.90021 1.23017 0.97610 0.94211 1.01811 1.20955 0.92053 0.92617 0.88594 1.44681 1.53419 1.00698 1.36518 1.19439 1.21384 0.86548 1.09902 0.90470 1.25620 1.00801 0.98993 1.00195 1.70160 1.40710 1.15791 1.33035 0.85022 0.77535 0.78937 0.77898 1.19327 1.21838 1.21599 1.21940 0.98014 0.84130 0.95798 0.88705 0.88298 0.87464 0.79218 0.74219 0.89011 0.88726 0.96780 0.96450 0.94241 0.94958 0.95429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 10.43 127.77 1.33 2.31 16 2 N -0.40 -8.07 3.17 -522.93 -1.66 -9.73 16 3 C 0.09 1.68 7.39 83.52 0.62 2.29 16 4 Cl 0.01 0.22 28.59 -2.72 -0.08 0.14 16 5 C -0.11 -2.01 6.66 22.06 0.15 -1.86 16 6 Cl -0.02 -0.40 29.12 -2.72 -0.08 -0.48 16 7 C -0.11 -1.83 10.33 22.58 0.23 -1.60 16 8 C -0.03 -0.67 6.89 40.31 0.28 -0.39 16 9 C 0.59 15.78 7.76 86.41 0.67 16.45 16 10 O -0.57 -19.43 14.34 -4.41 -0.06 -19.50 16 11 N -0.68 -16.71 5.17 -440.02 -2.28 -18.98 16 12 C 0.15 4.96 3.38 46.39 0.16 5.12 16 13 H 0.08 3.03 7.62 -2.39 -0.02 3.01 16 14 C -0.13 -4.09 6.60 31.78 0.21 -3.88 16 15 C 0.18 8.64 5.37 86.73 0.47 9.11 16 16 N -0.63 -32.10 3.39 -691.99 -2.35 -34.45 16 17 C -0.24 -13.82 10.28 84.03 0.86 -12.95 16 18 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 19 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 20 N -0.95 -56.37 10.31 21.65 0.22 -56.15 16 21 Si 0.98 45.91 29.55 68.60 2.03 47.94 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 25 C 0.13 5.27 6.93 86.86 0.60 5.87 16 26 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.10 2.10 6.21 -2.39 -0.01 2.09 16 28 H 0.11 1.31 7.88 -2.38 -0.02 1.29 16 29 H 0.19 2.12 7.49 -2.91 -0.02 2.10 16 30 H 0.42 7.24 7.51 -92.71 -0.70 6.55 16 31 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.09 2.48 8.00 -2.39 -0.02 2.46 16 33 H 0.01 0.75 7.38 -2.38 -0.02 0.73 16 34 H 0.02 0.91 7.51 -2.39 -0.02 0.89 16 35 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 36 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -69.79 340.79 2.22 -67.57 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.42 Total: 6.28 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 6.04 Total: 17.34 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -6.06 Total: -119.31 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.06 Total: -19.50 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.16 Total: -0.33 kcal Total: -69.79 2.22 -67.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014635623.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.212 kcal (2) G-P(sol) polarization free energy of solvation -69.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds