Wall clock time and date at job start Tue Mar 31 2020 17:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35661 * 125.69208 * 2 1 4 4 Cl 1.73604 * 125.58671 * 0.02562 * 3 2 1 5 5 C 1.35725 * 108.82878 * 179.77224 * 3 2 1 6 6 Cl 1.73597 * 126.06279 * 180.24414 * 5 3 2 7 7 C 1.39797 * 107.87407 * 0.39830 * 5 3 2 8 8 C 1.37796 * 125.69479 * 180.02562 * 2 1 3 9 9 C 1.46541 * 126.22574 * 359.97438 * 8 2 1 10 10 O 1.21717 * 120.00445 * 173.21151 * 9 8 2 11 11 N 1.34784 * 119.99805 * 353.20990 * 9 8 2 12 12 C 1.46498 * 119.99992 * 184.65224 * 11 9 8 13 13 H 1.09001 * 112.85210 * 51.42331 * 12 11 9 14 14 C 1.53780 * 113.61394 * 182.73262 * 12 11 9 15 15 C 1.53777 * 87.08100 * 89.11365 * 14 12 11 16 16 H 1.09001 * 113.69247 * 139.99265 * 15 14 12 17 17 N 1.46501 * 113.61653 * 270.88344 * 15 14 12 18 18 C 1.36933 * 120.00329 * 257.64699 * 17 15 14 19 19 H 1.08001 * 119.99824 * 8.23465 * 18 17 15 20 20 C 1.38814 * 120.00515 * 188.23265 * 18 17 15 21 21 N 1.31609 * 120.00231 * 187.68216 * 20 18 17 22 22 Si 1.86795 * 119.99604 * 7.68269 * 20 18 17 23 23 H 1.48501 * 109.47414 * 94.30542 * 22 20 18 24 24 H 1.48503 * 109.47105 * 214.30409 * 22 20 18 25 25 H 1.48498 * 109.47158 * 334.30332 * 22 20 18 26 26 C 1.53780 * 87.08347 * 25.43199 * 15 14 12 27 27 H 1.08999 * 109.47064 * 263.39171 * 1 2 3 28 28 H 1.09000 * 109.47308 * 23.39489 * 1 2 3 29 29 H 1.08998 * 109.47272 * 143.39461 * 1 2 3 30 30 H 1.07993 * 126.43597 * 179.86983 * 7 5 3 31 31 H 0.96994 * 119.99916 * 4.64987 * 11 9 8 32 32 H 1.09004 * 113.61457 * 203.66154 * 14 12 11 33 33 H 1.08997 * 113.61330 * 334.56777 * 14 12 11 34 34 H 0.96998 * 119.99803 * 77.65225 * 17 15 14 35 35 H 0.97002 * 120.00282 * 179.97438 * 21 20 18 36 36 H 1.08997 * 113.61561 * 220.01752 * 26 15 14 37 37 H 1.09004 * 113.69048 * 89.12447 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2565 1.1018 0.0000 4 17 1.6993 2.7460 0.0006 5 6 3.5554 0.7081 0.0051 6 17 4.9404 1.7546 0.0131 7 6 3.5801 -0.6897 -0.0008 8 6 2.2690 -1.1191 -0.0005 9 6 1.8143 -2.5121 -0.0006 10 8 2.6203 -3.4156 -0.1256 11 7 0.5033 -2.7931 0.1378 12 6 0.0594 -4.1854 0.2402 13 1 0.6003 -4.7473 1.0016 14 6 -1.4682 -4.3402 0.3266 15 6 -1.4705 -4.3965 -1.2102 16 1 -2.1657 -5.1288 -1.6206 17 7 -1.5887 -3.0817 -1.8454 18 6 -2.7894 -2.6779 -2.3655 19 1 -3.6783 -3.2664 -2.1920 20 6 -2.8643 -1.5123 -3.1156 21 7 -4.0363 -1.0431 -3.4874 22 14 -1.3014 -0.6099 -3.5974 23 1 -0.8727 -1.0494 -4.9496 24 1 -1.5584 0.8527 -3.6107 25 1 -0.2305 -0.9153 -2.6150 26 6 -0.0230 -4.9069 -1.1154 27 1 -0.3633 -0.1183 1.0208 28 1 -0.3634 0.9432 -0.4080 29 1 -0.3634 -0.8249 -0.6128 30 1 4.4601 -1.3156 -0.0009 31 1 -0.1461 -2.0734 0.1697 32 1 -1.7869 -5.2699 0.7980 33 1 -1.9735 -3.4637 0.7321 34 1 -0.8164 -2.4971 -1.8978 35 1 -4.0887 -0.2284 -4.0113 36 1 0.6382 -4.4879 -1.8739 37 1 0.0548 -5.9914 -1.0383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022166126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:57 Heat of formation + Delta-G solvation = 54.794813 kcal Electronic energy + Delta-G solvation = -24531.409516 eV Core-core repulsion = 20784.398041 eV Total energy + Delta-G solvation = -3747.011475 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.85455 -39.88024 -37.93991 -36.99534 -36.66577 -34.21259 -33.52250 -32.41084 -30.70097 -29.28769 -27.02482 -25.43290 -24.90455 -23.42292 -21.77440 -21.13488 -20.27034 -19.06376 -18.13715 -17.77412 -16.50081 -16.25052 -15.94749 -15.24293 -14.95255 -14.69145 -14.42403 -14.25480 -14.01772 -13.71058 -13.48796 -13.38518 -12.86769 -12.56364 -12.36448 -12.14549 -12.07320 -11.76415 -11.59940 -11.55931 -11.14266 -11.06586 -11.04144 -10.63006 -10.36468 -10.19015 -9.85585 -9.74667 -9.19540 -9.04189 -8.85790 -8.40051 -7.48882 -6.00384 -3.37243 1.04825 1.26542 1.85111 2.03927 2.67115 3.02855 3.13015 3.19988 3.20323 3.28636 4.32889 4.37976 4.44900 4.72647 4.84866 4.86629 4.94000 5.13428 5.21518 5.25633 5.36569 5.44094 5.56225 5.59863 5.95919 5.97802 6.02658 6.18010 6.28821 6.36634 6.42326 6.45390 6.55418 6.77126 7.44969 7.81502 8.11518 8.20568 8.98144 9.69126 9.90019 11.17246 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012192 B = 0.005080 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.945158 B = 5509.952062 C = 7098.186742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.409 5.409 3 C 0.095 3.905 4 Cl 0.002 6.998 5 C -0.101 4.101 6 Cl -0.032 7.032 7 C -0.091 4.091 8 C -0.019 4.019 9 C 0.591 3.409 10 O -0.521 6.521 11 N -0.711 5.711 12 C 0.123 3.877 13 H 0.085 0.915 14 C -0.174 4.174 15 C 0.166 3.834 16 H 0.074 0.926 17 N -0.733 5.733 18 C -0.250 4.250 19 H 0.094 0.906 20 C 0.012 3.988 21 N -0.923 5.923 22 Si 0.875 3.125 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.284 1.284 26 C -0.166 4.166 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.168 0.832 31 H 0.401 0.599 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.360 0.640 35 H 0.262 0.738 36 H 0.069 0.931 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.902 2.810 10.571 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.087 5.087 3 C -0.049 4.049 4 Cl 0.031 6.969 5 C -0.136 4.136 6 Cl -0.003 7.003 7 C -0.117 4.117 8 C -0.132 4.132 9 C 0.377 3.623 10 O -0.397 6.397 11 N -0.368 5.368 12 C 0.018 3.982 13 H 0.103 0.897 14 C -0.215 4.215 15 C 0.055 3.945 16 H 0.092 0.908 17 N -0.375 5.375 18 C -0.380 4.380 19 H 0.112 0.888 20 C -0.185 4.185 21 N -0.569 5.569 22 Si 0.706 3.294 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.211 1.211 26 C -0.206 4.206 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.185 0.815 31 H 0.243 0.757 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.195 0.805 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.837 2.386 10.375 15.920 hybrid contribution 0.691 1.559 -0.457 1.766 sum 12.528 3.945 9.918 16.458 Atomic orbital electron populations 1.22844 0.74972 1.07275 1.05253 1.44012 1.07122 1.04120 1.53414 1.20629 0.89001 0.82588 1.12642 1.98412 1.89835 1.11543 1.97123 1.19522 0.86334 0.91583 1.16143 1.98334 1.39330 1.65146 1.97525 1.21064 0.95683 0.91637 1.03303 1.20571 0.90046 0.86347 1.16275 1.16788 0.82738 0.85779 0.77025 1.90848 1.53830 1.45407 1.49635 1.46343 1.07139 1.09621 1.73671 1.21870 0.96476 0.81311 0.98521 0.89714 1.24083 0.92799 1.02435 1.02198 1.21183 0.94287 0.88394 0.90633 0.90831 1.42737 1.10702 1.14620 1.69410 1.19116 0.86551 1.06572 1.25763 0.88775 1.24735 0.95839 0.98107 0.99831 1.69689 1.21876 1.23377 1.41964 0.86848 0.83494 0.79526 0.79562 1.20791 1.21314 1.21102 1.23814 0.99376 1.00300 0.97069 0.88459 0.87682 0.87256 0.81455 0.75674 0.89071 0.90783 0.80522 0.92777 0.91253 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 9.37 59.85 0.56 1.05 16 2 N -0.41 -5.78 3.17 -116.64 -0.37 -6.15 16 3 C 0.10 1.30 7.39 -16.76 -0.12 1.18 16 4 Cl 0.00 0.03 28.37 -51.86 -1.47 -1.44 16 5 C -0.10 -1.35 6.66 -39.90 -0.27 -1.62 16 6 Cl -0.03 -0.37 29.12 -51.86 -1.51 -1.89 16 7 C -0.09 -1.26 10.65 -39.10 -0.42 -1.67 16 8 C -0.02 -0.29 6.88 -81.94 -0.56 -0.85 16 9 C 0.59 9.65 7.74 -12.91 -0.10 9.55 16 10 O -0.52 -9.59 16.89 5.17 0.09 -9.50 16 11 N -0.71 -10.84 4.05 -54.36 -0.22 -11.06 16 12 C 0.12 1.78 3.97 -67.12 -0.27 1.51 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 14 C -0.17 -2.46 7.58 -25.92 -0.20 -2.66 16 15 C 0.17 2.89 4.55 -67.12 -0.31 2.58 16 16 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 17 N -0.73 -15.54 4.78 -52.64 -0.25 -15.80 16 18 C -0.25 -6.40 10.45 -15.06 -0.16 -6.56 16 19 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 20 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 21 N -0.92 -26.91 13.97 55.49 0.78 -26.14 16 22 Si 0.87 20.53 27.78 -169.99 -4.72 15.80 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.04 4.72 56.52 0.27 -5.77 16 26 C -0.17 -2.57 7.58 -25.92 -0.20 -2.76 16 27 H 0.10 0.99 8.12 -51.93 -0.42 0.57 16 28 H 0.10 1.31 7.55 -51.93 -0.39 0.92 16 29 H 0.11 1.69 3.46 -51.93 -0.18 1.51 16 30 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.40 5.93 3.87 -40.82 -0.16 5.77 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 34 H 0.36 7.59 3.61 -40.82 -0.15 7.44 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -29.60 335.21 -8.71 -38.31 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -3.95 Total: 12.85 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.13 Total: -0.05 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.07 Total: -59.14 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.72 Total: 15.80 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -2.98 Total: -3.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.60 -8.71 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022166126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.100 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds