Wall clock time and date at job start Tue Mar 31 2020 17:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35661 * 125.69208 * 2 1 4 4 Cl 1.73604 * 125.58671 * 0.02562 * 3 2 1 5 5 C 1.35725 * 108.82878 * 179.77224 * 3 2 1 6 6 Cl 1.73597 * 126.06279 * 180.24414 * 5 3 2 7 7 C 1.39797 * 107.87407 * 0.39830 * 5 3 2 8 8 C 1.37796 * 125.69479 * 180.02562 * 2 1 3 9 9 C 1.46541 * 126.22574 * 359.97438 * 8 2 1 10 10 O 1.21717 * 120.00445 * 173.21151 * 9 8 2 11 11 N 1.34784 * 119.99805 * 353.20990 * 9 8 2 12 12 C 1.46498 * 119.99992 * 184.65224 * 11 9 8 13 13 H 1.09001 * 112.85210 * 51.42331 * 12 11 9 14 14 C 1.53780 * 113.61394 * 182.73262 * 12 11 9 15 15 C 1.53777 * 87.08100 * 89.11365 * 14 12 11 16 16 H 1.09001 * 113.69247 * 139.99265 * 15 14 12 17 17 N 1.46501 * 113.61653 * 270.88344 * 15 14 12 18 18 C 1.36933 * 120.00329 * 257.64699 * 17 15 14 19 19 H 1.08001 * 119.99824 * 8.23465 * 18 17 15 20 20 C 1.38814 * 120.00515 * 188.23265 * 18 17 15 21 21 N 1.31609 * 120.00231 * 187.68216 * 20 18 17 22 22 Si 1.86795 * 119.99604 * 7.68269 * 20 18 17 23 23 H 1.48501 * 109.47414 * 94.30542 * 22 20 18 24 24 H 1.48503 * 109.47105 * 214.30409 * 22 20 18 25 25 H 1.48498 * 109.47158 * 334.30332 * 22 20 18 26 26 C 1.53780 * 87.08347 * 25.43199 * 15 14 12 27 27 H 1.08999 * 109.47064 * 263.39171 * 1 2 3 28 28 H 1.09000 * 109.47308 * 23.39489 * 1 2 3 29 29 H 1.08998 * 109.47272 * 143.39461 * 1 2 3 30 30 H 1.07993 * 126.43597 * 179.86983 * 7 5 3 31 31 H 0.96994 * 119.99916 * 4.64987 * 11 9 8 32 32 H 1.09004 * 113.61457 * 203.66154 * 14 12 11 33 33 H 1.08997 * 113.61330 * 334.56777 * 14 12 11 34 34 H 0.96998 * 119.99803 * 77.65225 * 17 15 14 35 35 H 0.97002 * 120.00282 * 179.97438 * 21 20 18 36 36 H 1.08997 * 113.61561 * 220.01752 * 26 15 14 37 37 H 1.09004 * 113.69048 * 89.12447 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2565 1.1018 0.0000 4 17 1.6993 2.7460 0.0006 5 6 3.5554 0.7081 0.0051 6 17 4.9404 1.7546 0.0131 7 6 3.5801 -0.6897 -0.0008 8 6 2.2690 -1.1191 -0.0005 9 6 1.8143 -2.5121 -0.0006 10 8 2.6203 -3.4156 -0.1256 11 7 0.5033 -2.7931 0.1378 12 6 0.0594 -4.1854 0.2402 13 1 0.6003 -4.7473 1.0016 14 6 -1.4682 -4.3402 0.3266 15 6 -1.4705 -4.3965 -1.2102 16 1 -2.1657 -5.1288 -1.6206 17 7 -1.5887 -3.0817 -1.8454 18 6 -2.7894 -2.6779 -2.3655 19 1 -3.6783 -3.2664 -2.1920 20 6 -2.8643 -1.5123 -3.1156 21 7 -4.0363 -1.0431 -3.4874 22 14 -1.3014 -0.6099 -3.5974 23 1 -0.8727 -1.0494 -4.9496 24 1 -1.5584 0.8527 -3.6107 25 1 -0.2305 -0.9153 -2.6150 26 6 -0.0230 -4.9069 -1.1154 27 1 -0.3633 -0.1183 1.0208 28 1 -0.3634 0.9432 -0.4080 29 1 -0.3634 -0.8249 -0.6128 30 1 4.4601 -1.3156 -0.0009 31 1 -0.1461 -2.0734 0.1697 32 1 -1.7869 -5.2699 0.7980 33 1 -1.9735 -3.4637 0.7321 34 1 -0.8164 -2.4971 -1.8978 35 1 -4.0887 -0.2284 -4.0113 36 1 0.6382 -4.4879 -1.8739 37 1 0.0548 -5.9914 -1.0383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022166126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:57 Heat of formation + Delta-G solvation = 37.270395 kcal Electronic energy + Delta-G solvation = -24532.169432 eV Core-core repulsion = 20784.398041 eV Total energy + Delta-G solvation = -3747.771391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.93121 -41.11291 -39.23826 -37.99184 -37.63479 -35.71630 -34.96003 -33.66926 -32.51773 -30.40442 -28.05689 -26.71613 -26.35904 -24.92915 -23.14092 -22.19769 -21.44747 -20.48560 -19.55409 -19.21465 -17.67030 -17.34047 -17.17191 -16.69202 -16.34849 -16.00797 -15.76886 -15.50807 -15.37645 -14.84907 -14.75585 -14.53437 -14.34551 -13.99911 -13.72844 -13.38434 -13.07395 -13.03823 -12.94966 -12.69798 -12.55037 -12.50193 -12.09607 -12.02001 -11.99309 -11.86443 -11.42298 -11.08072 -11.02830 -10.21764 -10.00682 -9.46389 -9.32151 -8.08168 -5.40889 -0.05903 0.24027 0.85226 0.98302 1.15349 1.32151 1.35587 1.62077 1.99405 2.01947 2.36201 3.21713 3.26463 3.37618 3.50278 3.63472 3.73624 3.83258 3.91972 4.18233 4.24361 4.29175 4.33597 4.40493 4.75923 4.89506 4.96090 4.98937 5.02930 5.19455 5.25527 5.26047 5.37148 5.53504 5.80978 6.18227 6.26467 6.90728 7.03084 7.79050 7.98363 9.12995 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012192 B = 0.005080 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.945158 B = 5509.952062 C = 7098.186742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.410 5.410 3 C 0.093 3.907 4 Cl 0.016 6.984 5 C -0.107 4.107 6 Cl -0.018 7.018 7 C -0.087 4.087 8 C -0.040 4.040 9 C 0.590 3.410 10 O -0.548 6.548 11 N -0.710 5.710 12 C 0.122 3.878 13 H 0.103 0.897 14 C -0.153 4.153 15 C 0.142 3.858 16 H 0.068 0.932 17 N -0.736 5.736 18 C -0.226 4.226 19 H 0.067 0.933 20 C -0.046 4.046 21 N -0.972 5.972 22 Si 0.931 3.069 23 H -0.299 1.299 24 H -0.286 1.286 25 H -0.256 1.256 26 C -0.157 4.157 27 H 0.126 0.874 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.178 0.822 31 H 0.404 0.596 32 H 0.125 0.875 33 H 0.067 0.933 34 H 0.362 0.638 35 H 0.258 0.742 36 H 0.044 0.956 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.387 2.704 12.060 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.088 5.088 3 C -0.052 4.052 4 Cl 0.045 6.955 5 C -0.141 4.141 6 Cl 0.010 6.990 7 C -0.114 4.114 8 C -0.153 4.153 9 C 0.378 3.622 10 O -0.426 6.426 11 N -0.366 5.366 12 C 0.018 3.982 13 H 0.121 0.879 14 C -0.193 4.193 15 C 0.033 3.967 16 H 0.087 0.913 17 N -0.379 5.379 18 C -0.357 4.357 19 H 0.085 0.915 20 C -0.238 4.238 21 N -0.622 5.622 22 Si 0.761 3.239 23 H -0.226 1.226 24 H -0.212 1.212 25 H -0.182 1.182 26 C -0.196 4.196 27 H 0.144 0.856 28 H 0.129 0.871 29 H 0.105 0.895 30 H 0.195 0.805 31 H 0.246 0.754 32 H 0.143 0.857 33 H 0.086 0.914 34 H 0.197 0.803 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.345 2.247 11.914 18.030 hybrid contribution 0.211 1.528 -0.885 1.779 sum 13.555 3.775 11.029 17.878 Atomic orbital electron populations 1.22944 0.74606 1.06566 1.06727 1.44049 1.07365 1.03995 1.53346 1.20827 0.89174 0.83118 1.12040 1.98418 1.89709 1.10396 1.97024 1.19615 0.86853 0.91679 1.15988 1.98340 1.38531 1.64629 1.97461 1.21269 0.95724 0.92061 1.02296 1.20487 0.90648 0.86147 1.17974 1.16929 0.82740 0.86066 0.76497 1.90825 1.54437 1.46254 1.51090 1.46407 1.06968 1.10115 1.73154 1.21983 0.96828 0.81078 0.98290 0.87923 1.23941 0.92507 1.03904 0.98932 1.21523 0.95842 0.86593 0.92727 0.91342 1.42687 1.09168 1.16309 1.69702 1.19062 0.87259 1.05360 1.24007 0.91523 1.25288 0.98235 0.99471 1.00841 1.69835 1.24131 1.24257 1.43929 0.85895 0.81056 0.78293 0.78695 1.22627 1.21189 1.18165 1.23807 0.96820 1.02089 0.96918 0.85591 0.87135 0.89465 0.80484 0.75395 0.85691 0.91406 0.80311 0.93236 0.93699 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.37 127.77 1.20 1.96 16 2 N -0.41 -10.78 3.17 -522.94 -1.66 -12.43 16 3 C 0.09 2.34 7.39 83.52 0.62 2.96 16 4 Cl 0.02 0.35 28.37 -2.72 -0.08 0.27 16 5 C -0.11 -2.65 6.66 22.06 0.15 -2.51 16 6 Cl -0.02 -0.39 29.12 -2.72 -0.08 -0.47 16 7 C -0.09 -2.27 10.65 22.58 0.24 -2.03 16 8 C -0.04 -1.13 6.88 40.31 0.28 -0.86 16 9 C 0.59 18.35 7.74 86.41 0.67 19.02 16 10 O -0.55 -19.40 16.89 -4.40 -0.07 -19.47 16 11 N -0.71 -20.26 4.05 -444.11 -1.80 -22.06 16 12 C 0.12 3.21 3.97 45.52 0.18 3.39 16 13 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.15 -3.87 7.58 31.12 0.24 -3.63 16 15 C 0.14 4.71 4.55 45.52 0.21 4.92 16 16 H 0.07 2.33 8.13 -2.39 -0.02 2.31 16 17 N -0.74 -30.61 4.78 -320.45 -1.53 -32.14 16 18 C -0.23 -11.63 10.45 84.03 0.88 -10.75 16 19 H 0.07 3.76 8.06 -2.91 -0.02 3.74 16 20 C -0.05 -2.48 5.50 84.86 0.47 -2.02 16 21 N -0.97 -58.03 13.97 21.65 0.30 -57.73 16 22 Si 0.93 42.68 27.78 68.60 1.91 44.59 16 23 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.26 -10.35 4.72 99.48 0.47 -9.88 16 26 C -0.16 -4.50 7.58 31.12 0.24 -4.26 16 27 H 0.13 2.25 8.12 -2.39 -0.02 2.23 16 28 H 0.11 2.54 7.55 -2.39 -0.02 2.52 16 29 H 0.09 2.54 3.46 -2.39 -0.01 2.53 16 30 H 0.18 4.13 8.06 -2.91 -0.02 4.10 16 31 H 0.40 11.16 3.87 -92.71 -0.36 10.80 16 32 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.07 1.85 8.11 -2.39 -0.02 1.83 16 34 H 0.36 14.82 3.61 -92.71 -0.33 14.49 16 35 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.12 2.75 8.14 -2.38 -0.02 2.73 16 Total: -1.00 -64.13 335.21 2.55 -61.58 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.21 Total: 31.67 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 5.35 Total: 6.20 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -4.69 Total: -124.36 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.07 Total: -19.47 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.91 Total: 44.59 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.16 Total: -0.20 kcal Total: -64.13 2.55 -61.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022166126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.851 kcal (2) G-P(sol) polarization free energy of solvation -64.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds