Wall clock time and date at job start Tue Mar 31 2020 16:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99895 * 2 1 4 4 H 1.48508 * 109.46732 * 90.00499 * 3 2 1 5 5 H 1.48493 * 109.47565 * 330.00703 * 3 2 1 6 6 H 1.48503 * 109.47278 * 209.99994 * 3 2 1 7 7 C 1.38812 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99935 * 20.20256 * 7 2 1 9 9 N 1.36932 * 120.00161 * 200.20520 * 7 2 1 10 10 C 1.47426 * 125.64644 * 20.52934 * 9 7 2 11 11 C 1.55131 * 104.72282 * 155.81714 * 10 9 7 12 12 C 1.55159 * 101.48240 * 37.29475 * 11 10 9 13 13 C 1.47018 * 125.64988 * 200.83355 * 9 7 2 14 14 H 1.09001 * 109.88702 * 300.44358 * 13 9 7 15 15 C 1.53006 * 109.87790 * 61.60938 * 13 9 7 16 16 N 1.46500 * 109.46888 * 300.86202 * 15 13 9 17 17 C 1.34779 * 119.99885 * 173.61969 * 16 15 13 18 18 O 1.21721 * 120.00093 * 0.02562 * 17 16 15 19 19 C 1.46535 * 120.00168 * 179.97438 * 17 16 15 20 20 C 1.37964 * 126.22359 * 179.97438 * 19 17 16 21 21 C 1.39795 * 107.12599 * 180.02562 * 20 19 17 22 22 Cl 1.73599 * 126.06046 * 179.97438 * 21 20 19 23 23 C 1.35721 * 107.87770 * 0.02562 * 21 20 19 24 24 Cl 1.73597 * 125.58571 * 180.02562 * 23 21 20 25 25 N 1.35662 * 108.83237 * 359.73061 * 23 21 20 26 26 H 0.96997 * 125.70191 * 180.30520 * 25 23 21 27 27 H 0.97008 * 120.00073 * 174.90723 * 1 2 3 28 28 H 1.08997 * 110.36615 * 274.74710 * 10 9 7 29 29 H 1.08999 * 110.36710 * 37.06781 * 10 9 7 30 30 H 1.08998 * 111.19399 * 279.19401 * 11 10 9 31 31 H 1.09000 * 110.90466 * 155.27323 * 11 10 9 32 32 H 1.09009 * 110.71827 * 205.96553 * 12 11 10 33 33 H 1.09004 * 110.72134 * 82.70046 * 12 11 10 34 34 H 1.08991 * 109.47657 * 60.86837 * 15 13 9 35 35 H 1.09004 * 109.46919 * 180.86890 * 15 13 9 36 36 H 0.96998 * 120.00394 * 353.62107 * 16 15 13 37 37 H 1.07999 * 126.43635 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 1.4476 2.6527 -0.6998 6 1 3.5477 1.4402 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.5201 -2.1086 -0.3240 9 7 3.3164 -1.2388 0.4090 10 6 3.9803 -0.2299 1.2545 11 6 5.1560 -0.9888 1.9242 12 6 5.6163 -1.9225 0.7737 13 6 4.2905 -2.2875 0.0733 14 1 3.9348 -3.2529 0.4330 15 6 4.4992 -2.3380 -1.4416 16 7 3.2206 -2.6130 -2.1017 17 6 3.1346 -2.5758 -3.4463 18 8 4.1194 -2.3142 -4.1121 19 6 1.8558 -2.8515 -4.1066 20 6 1.6230 -2.8480 -5.4664 21 6 0.2734 -3.1604 -5.6539 22 17 -0.5436 -3.2878 -7.1803 23 6 -0.2852 -3.3453 -4.4308 24 17 -1.9456 -3.7529 -4.1297 25 7 0.6680 -3.1657 -3.4824 26 1 0.5354 -3.2438 -2.5247 27 1 -0.4850 -0.8368 -0.0746 28 1 4.3550 0.5906 0.6426 29 1 3.2907 0.1442 2.0112 30 1 4.8139 -1.5665 2.7829 31 1 5.9509 -0.3000 2.2102 32 1 6.1008 -2.8144 1.1713 33 1 6.2808 -1.3936 0.0903 34 1 4.8878 -1.3801 -1.7871 35 1 5.2105 -3.1275 -1.6843 36 1 2.4359 -2.8219 -1.5712 37 1 2.3474 -2.6426 -6.2407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028058556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:31 Heat of formation + Delta-G solvation = 20.331623 kcal Electronic energy + Delta-G solvation = -24160.504137 eV Core-core repulsion = 20411.998226 eV Total energy + Delta-G solvation = -3748.505911 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.43120 -39.09044 -37.89152 -36.81858 -36.46940 -34.21757 -32.95420 -31.17837 -30.07842 -29.99187 -28.64549 -25.17255 -23.82745 -22.39949 -21.18149 -20.74214 -20.17876 -19.85050 -18.69915 -17.52501 -16.18377 -15.94483 -15.47767 -15.29638 -15.07785 -14.69452 -14.30224 -13.86937 -13.63652 -13.43804 -13.35973 -13.24252 -12.86279 -12.46728 -11.96345 -11.84843 -11.76186 -11.48073 -11.44100 -11.13156 -11.05972 -10.92779 -10.83042 -10.57219 -10.11385 -9.85082 -9.63935 -9.36361 -9.03727 -8.77749 -8.64981 -8.18969 -7.27464 -6.49836 -3.50139 1.28871 1.46649 2.08523 2.23513 3.18683 3.31331 3.44330 3.48709 3.57400 3.61605 4.42857 4.79135 4.85157 4.98479 5.10974 5.13748 5.26446 5.41625 5.47375 5.62296 5.71715 5.77452 5.96529 5.99885 6.13255 6.16797 6.22261 6.27835 6.42417 6.51598 6.66990 6.70067 6.81017 6.95275 7.43749 7.87535 8.07567 8.46224 8.75621 9.34282 10.05555 10.93486 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014807 B = 0.004012 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.605303 B = 6978.164372 C = 7872.847623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.009 4.009 3 Si 1.065 2.935 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.284 1.284 7 C -0.327 4.327 8 H 0.064 0.936 9 N -0.601 5.601 10 C 0.105 3.895 11 C -0.130 4.130 12 C -0.123 4.123 13 C 0.143 3.857 14 H 0.044 0.956 15 C 0.114 3.886 16 N -0.697 5.697 17 C 0.583 3.417 18 O -0.540 6.540 19 C -0.003 4.003 20 C -0.097 4.097 21 C -0.100 4.100 22 Cl -0.035 7.035 23 C 0.099 3.901 24 Cl 0.001 6.999 25 N -0.513 5.513 26 H 0.431 0.569 27 H 0.261 0.739 28 H 0.032 0.968 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.404 0.596 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 -8.049 -4.983 9.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.211 4.211 3 Si 0.897 3.103 4 H -0.220 1.220 5 H -0.227 1.227 6 H -0.211 1.211 7 C -0.455 4.455 8 H 0.081 0.919 9 N -0.328 5.328 10 C -0.020 4.020 11 C -0.169 4.169 12 C -0.161 4.161 13 C 0.035 3.965 14 H 0.062 0.938 15 C -0.011 4.011 16 N -0.349 5.349 17 C 0.369 3.631 18 O -0.418 6.418 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.135 4.135 22 Cl -0.007 7.007 23 C -0.046 4.046 24 Cl 0.029 6.971 25 N -0.114 5.114 26 H 0.271 0.729 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.243 0.757 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.328 -6.283 -5.294 8.865 hybrid contribution -0.699 -1.743 0.561 1.960 sum 2.629 -8.026 -4.734 9.682 Atomic orbital electron populations 1.70969 1.05794 1.29772 1.48611 1.25964 0.96346 1.01123 0.97664 0.83797 0.74374 0.75789 0.76388 1.22001 1.22701 1.21085 1.19642 0.84895 0.94635 1.46314 0.91860 1.44841 1.07495 1.24007 1.56417 1.22096 0.93634 0.92739 0.93545 1.22749 0.98170 0.98445 0.97489 1.22516 0.96386 0.99543 0.97675 1.21326 0.90313 0.93989 0.90867 0.93791 1.22025 0.84207 1.00500 0.94388 1.46042 1.14315 1.69123 1.05397 1.16832 0.85729 0.77989 0.82553 1.90817 1.35971 1.50187 1.64805 1.20595 0.86222 1.12619 0.92331 1.21049 0.93877 1.03302 0.94092 1.19516 0.93439 1.14870 0.85705 1.98327 1.78295 1.97105 1.26947 1.20539 0.84811 1.10875 0.88397 1.98417 1.10609 1.91917 1.96148 1.41989 1.07175 1.52819 1.09390 0.72866 0.92860 0.95004 0.92343 0.91372 0.91562 0.91376 0.91216 0.91411 0.92612 0.75671 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.88 13.70 55.49 0.76 -25.12 16 2 C -0.01 -0.23 5.45 -17.43 -0.09 -0.32 16 3 Si 1.06 25.52 24.72 -169.99 -4.20 21.32 16 4 H -0.29 -6.66 6.82 56.52 0.39 -6.27 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.61 6.21 56.52 0.35 -6.26 16 7 C -0.33 -7.90 8.73 -15.06 -0.13 -8.04 16 8 H 0.06 1.52 6.32 -52.48 -0.33 1.19 16 9 N -0.60 -12.74 2.92 -162.43 -0.47 -13.21 16 10 C 0.10 2.06 4.73 -2.41 -0.01 2.05 16 11 C -0.13 -1.94 7.10 -24.46 -0.17 -2.12 16 12 C -0.12 -1.73 6.47 -24.90 -0.16 -1.89 16 13 C 0.14 2.46 3.38 -66.95 -0.23 2.23 16 14 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 15 C 0.11 1.99 5.22 -4.04 -0.02 1.96 16 16 N -0.70 -12.47 4.79 -61.66 -0.30 -12.77 16 17 C 0.58 10.77 7.78 -12.92 -0.10 10.67 16 18 O -0.54 -11.18 16.87 5.17 0.09 -11.10 16 19 C 0.00 -0.05 7.06 -81.93 -0.58 -0.63 16 20 C -0.10 -1.48 10.64 -39.10 -0.42 -1.90 16 21 C -0.10 -1.46 6.66 -39.90 -0.27 -1.73 16 22 Cl -0.04 -0.45 29.12 -51.86 -1.51 -1.96 16 23 C 0.10 1.44 7.75 -16.76 -0.13 1.31 16 24 Cl 0.00 0.01 29.13 -51.86 -1.51 -1.50 16 25 N -0.51 -7.69 6.01 -6.51 -0.04 -7.73 16 26 H 0.43 6.09 8.19 -40.82 -0.33 5.75 16 27 H 0.26 7.21 8.73 -40.82 -0.36 6.85 16 28 H 0.03 0.66 5.24 -51.93 -0.27 0.39 16 29 H 0.06 1.23 6.87 -51.93 -0.36 0.87 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.07 0.94 7.83 -51.93 -0.41 0.53 16 34 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.40 7.18 4.74 -40.82 -0.19 6.98 16 37 H 0.17 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -29.02 333.15 -8.54 -37.56 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -4.07 Total: 7.88 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.31 Total: 1.60 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.05 Total: -58.83 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -4.20 Total: 21.32 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -3.02 Total: -3.46 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.02 -8.54 -37.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028058556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.891 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds