Wall clock time and date at job start Tue Mar 31 2020 16:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99895 * 2 1 4 4 H 1.48508 * 109.46732 * 90.00499 * 3 2 1 5 5 H 1.48493 * 109.47565 * 330.00703 * 3 2 1 6 6 H 1.48503 * 109.47278 * 209.99994 * 3 2 1 7 7 C 1.38812 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99935 * 20.20256 * 7 2 1 9 9 N 1.36932 * 120.00161 * 200.20520 * 7 2 1 10 10 C 1.47426 * 125.64644 * 20.52934 * 9 7 2 11 11 C 1.55131 * 104.72282 * 155.81714 * 10 9 7 12 12 C 1.55159 * 101.48240 * 37.29475 * 11 10 9 13 13 C 1.47018 * 125.64988 * 200.83355 * 9 7 2 14 14 H 1.09001 * 109.88702 * 300.44358 * 13 9 7 15 15 C 1.53006 * 109.87790 * 61.60938 * 13 9 7 16 16 N 1.46500 * 109.46888 * 300.86202 * 15 13 9 17 17 C 1.34779 * 119.99885 * 173.61969 * 16 15 13 18 18 O 1.21721 * 120.00093 * 0.02562 * 17 16 15 19 19 C 1.46535 * 120.00168 * 179.97438 * 17 16 15 20 20 C 1.37964 * 126.22359 * 179.97438 * 19 17 16 21 21 C 1.39795 * 107.12599 * 180.02562 * 20 19 17 22 22 Cl 1.73599 * 126.06046 * 179.97438 * 21 20 19 23 23 C 1.35721 * 107.87770 * 0.02562 * 21 20 19 24 24 Cl 1.73597 * 125.58571 * 180.02562 * 23 21 20 25 25 N 1.35662 * 108.83237 * 359.73061 * 23 21 20 26 26 H 0.96997 * 125.70191 * 180.30520 * 25 23 21 27 27 H 0.97008 * 120.00073 * 174.90723 * 1 2 3 28 28 H 1.08997 * 110.36615 * 274.74710 * 10 9 7 29 29 H 1.08999 * 110.36710 * 37.06781 * 10 9 7 30 30 H 1.08998 * 111.19399 * 279.19401 * 11 10 9 31 31 H 1.09000 * 110.90466 * 155.27323 * 11 10 9 32 32 H 1.09009 * 110.71827 * 205.96553 * 12 11 10 33 33 H 1.09004 * 110.72134 * 82.70046 * 12 11 10 34 34 H 1.08991 * 109.47657 * 60.86837 * 15 13 9 35 35 H 1.09004 * 109.46919 * 180.86890 * 15 13 9 36 36 H 0.96998 * 120.00394 * 353.62107 * 16 15 13 37 37 H 1.07999 * 126.43635 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 1.4476 2.6527 -0.6998 6 1 3.5477 1.4402 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.5201 -2.1086 -0.3240 9 7 3.3164 -1.2388 0.4090 10 6 3.9803 -0.2299 1.2545 11 6 5.1560 -0.9888 1.9242 12 6 5.6163 -1.9225 0.7737 13 6 4.2905 -2.2875 0.0733 14 1 3.9348 -3.2529 0.4330 15 6 4.4992 -2.3380 -1.4416 16 7 3.2206 -2.6130 -2.1017 17 6 3.1346 -2.5758 -3.4463 18 8 4.1194 -2.3142 -4.1121 19 6 1.8558 -2.8515 -4.1066 20 6 1.6230 -2.8480 -5.4664 21 6 0.2734 -3.1604 -5.6539 22 17 -0.5436 -3.2878 -7.1803 23 6 -0.2852 -3.3453 -4.4308 24 17 -1.9456 -3.7529 -4.1297 25 7 0.6680 -3.1657 -3.4824 26 1 0.5354 -3.2438 -2.5247 27 1 -0.4850 -0.8368 -0.0746 28 1 4.3550 0.5906 0.6426 29 1 3.2907 0.1442 2.0112 30 1 4.8139 -1.5665 2.7829 31 1 5.9509 -0.3000 2.2102 32 1 6.1008 -2.8144 1.1713 33 1 6.2808 -1.3936 0.0903 34 1 4.8878 -1.3801 -1.7871 35 1 5.2105 -3.1275 -1.6843 36 1 2.4359 -2.8219 -1.5712 37 1 2.3474 -2.6426 -6.2407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028058556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:30 Heat of formation + Delta-G solvation = 1.616428 kcal Electronic energy + Delta-G solvation = -24161.315689 eV Core-core repulsion = 20411.998226 eV Total energy + Delta-G solvation = -3749.317463 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.66081 -40.52483 -39.35183 -37.94528 -37.56298 -35.66891 -34.80009 -32.38610 -31.64819 -31.43503 -29.93836 -26.60722 -25.49615 -23.81881 -22.51194 -21.93753 -21.50896 -21.27780 -20.18712 -19.25142 -17.50955 -17.38176 -16.89921 -16.72762 -16.56267 -15.86596 -15.64987 -15.48161 -15.18039 -15.06592 -14.68904 -14.46427 -14.28101 -13.89846 -13.30383 -13.04205 -13.00971 -12.91384 -12.79168 -12.64242 -12.53502 -12.17617 -12.02195 -11.97877 -11.61544 -11.40376 -11.29218 -11.15254 -10.67805 -10.25003 -10.09940 -9.40729 -9.10277 -8.49435 -5.44083 0.01773 0.30265 0.95231 1.03183 1.38256 1.50477 1.63585 1.91843 2.13993 2.24972 2.50613 3.15138 3.33920 3.61779 3.69736 3.85400 3.97726 4.13123 4.21812 4.32665 4.41704 4.43702 4.64066 4.74148 4.79642 4.98979 5.02114 5.02293 5.13874 5.21017 5.26828 5.41353 5.47688 5.59211 5.76808 6.19249 6.42738 6.82978 7.02242 7.49835 8.19963 8.94384 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014807 B = 0.004012 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.605303 B = 6978.164372 C = 7872.847623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.062 4.062 3 Si 1.090 2.910 4 H -0.278 1.278 5 H -0.319 1.319 6 H -0.277 1.277 7 C -0.292 4.292 8 H 0.061 0.939 9 N -0.620 5.620 10 C 0.092 3.908 11 C -0.118 4.118 12 C -0.114 4.114 13 C 0.139 3.861 14 H 0.053 0.947 15 C 0.115 3.885 16 N -0.699 5.699 17 C 0.583 3.417 18 O -0.567 6.567 19 C -0.025 4.025 20 C -0.091 4.091 21 C -0.106 4.106 22 Cl -0.018 7.018 23 C 0.100 3.900 24 Cl 0.016 6.984 25 N -0.511 5.511 26 H 0.432 0.568 27 H 0.253 0.747 28 H 0.024 0.976 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.404 0.596 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 -9.164 -4.667 11.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.921 3.079 4 H -0.205 1.205 5 H -0.248 1.248 6 H -0.203 1.203 7 C -0.421 4.421 8 H 0.079 0.921 9 N -0.346 5.346 10 C -0.033 4.033 11 C -0.156 4.156 12 C -0.152 4.152 13 C 0.033 3.967 14 H 0.070 0.930 15 C -0.010 4.010 16 N -0.350 5.350 17 C 0.370 3.630 18 O -0.447 6.447 19 C -0.139 4.139 20 C -0.118 4.118 21 C -0.141 4.141 22 Cl 0.010 6.990 23 C -0.045 4.045 24 Cl 0.044 6.956 25 N -0.112 5.112 26 H 0.273 0.727 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.242 0.758 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.033 -7.420 -4.949 10.241 hybrid contribution -1.214 -1.509 0.420 1.982 sum 3.819 -8.929 -4.529 10.716 Atomic orbital electron populations 1.71022 1.06810 1.29314 1.52880 1.26571 0.96465 1.03335 0.99447 0.83444 0.73678 0.73838 0.76942 1.20483 1.24849 1.20281 1.19719 0.86199 0.93876 1.42301 0.92143 1.45052 1.07409 1.25195 1.56968 1.22216 0.95018 0.92953 0.93107 1.22712 0.96759 0.98556 0.97551 1.22557 0.94654 1.00901 0.97080 1.21546 0.91241 0.92958 0.90994 0.92960 1.22040 0.84355 1.00269 0.94319 1.46081 1.14585 1.68894 1.05416 1.17027 0.86091 0.77370 0.82536 1.90790 1.37064 1.51613 1.65268 1.20392 0.86109 1.14638 0.92807 1.21252 0.94446 1.02210 0.93881 1.19595 0.93315 1.14696 0.86488 1.98332 1.77873 1.97022 1.25732 1.20751 0.85387 1.09992 0.88400 1.98424 1.09320 1.91717 1.96095 1.41951 1.06945 1.52692 1.09571 0.72664 0.93730 0.95825 0.94319 0.90575 0.88704 0.87892 0.90362 0.93528 0.90170 0.75755 0.80735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.75 13.70 21.65 0.30 -55.45 16 2 C -0.06 -3.33 5.45 84.86 0.46 -2.87 16 3 Si 1.09 52.35 24.72 68.60 1.70 54.05 16 4 H -0.28 -12.48 6.82 99.48 0.68 -11.81 16 5 H -0.32 -16.22 7.11 99.48 0.71 -15.52 16 6 H -0.28 -12.70 6.21 99.48 0.62 -12.08 16 7 C -0.29 -14.06 8.73 84.03 0.73 -13.33 16 8 H 0.06 2.92 6.32 -2.91 -0.02 2.90 16 9 N -0.62 -25.42 2.92 -667.82 -1.95 -27.37 16 10 C 0.09 3.44 4.73 86.93 0.41 3.85 16 11 C -0.12 -3.07 7.10 32.06 0.23 -2.84 16 12 C -0.11 -2.72 6.47 31.78 0.21 -2.52 16 13 C 0.14 4.43 3.38 45.34 0.15 4.58 16 14 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 15 C 0.12 3.80 5.22 86.38 0.45 4.25 16 16 N -0.70 -24.55 4.79 -467.20 -2.24 -26.79 16 17 C 0.58 21.38 7.78 86.41 0.67 22.06 16 18 O -0.57 -23.36 16.87 -4.41 -0.07 -23.43 16 19 C -0.03 -0.82 7.06 40.30 0.28 -0.54 16 20 C -0.09 -2.73 10.64 22.58 0.24 -2.49 16 21 C -0.11 -2.98 6.66 22.06 0.15 -2.84 16 22 Cl -0.02 -0.44 29.12 -2.72 -0.08 -0.52 16 23 C 0.10 2.84 7.75 83.52 0.65 3.49 16 24 Cl 0.02 0.40 29.13 -2.72 -0.08 0.32 16 25 N -0.51 -15.21 6.01 -174.52 -1.05 -16.26 16 26 H 0.43 12.30 8.19 -92.71 -0.76 11.54 16 27 H 0.25 14.44 8.73 -92.70 -0.81 13.63 16 28 H 0.02 0.94 5.24 -2.39 -0.01 0.93 16 29 H 0.04 1.59 6.87 -2.39 -0.02 1.58 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.08 1.78 7.83 -2.38 -0.02 1.76 16 34 H 0.05 1.74 8.09 -2.39 -0.02 1.72 16 35 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.40 14.19 4.74 -92.71 -0.44 13.75 16 37 H 0.18 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -62.95 333.15 0.95 -62.00 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.21 Total: 22.65 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 4.64 Total: 10.81 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -4.94 Total: -125.88 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.07 Total: -23.43 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 1.70 Total: 54.05 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.16 Total: -0.20 kcal Total: -62.95 0.95 -62.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028058556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.621 kcal (2) G-P(sol) polarization free energy of solvation -62.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds