Wall clock time and date at job start Tue Mar 31 2020 16:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99912 * 2 1 4 4 H 1.48504 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47173 * 299.99945 * 3 2 1 6 6 H 1.48505 * 109.47163 * 60.00287 * 3 2 1 7 7 C 1.38810 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99689 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00150 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64946 * 359.97438 * 9 7 2 11 11 C 1.54323 * 107.27222 * 178.97087 * 10 9 7 12 12 C 1.55153 * 102.94193 * 337.80469 * 11 10 9 13 13 H 1.08997 * 111.00896 * 277.38598 * 12 11 10 14 14 C 1.53007 * 111.00409 * 153.57516 * 12 11 10 15 15 N 1.46491 * 109.47350 * 178.18187 * 14 12 11 16 16 C 1.34780 * 120.00052 * 180.02562 * 15 14 12 17 17 O 1.21711 * 119.99939 * 359.97438 * 16 15 14 18 18 C 1.46541 * 120.00004 * 179.97438 * 16 15 14 19 19 C 1.37955 * 126.22408 * 179.68583 * 18 16 15 20 20 C 1.39797 * 107.13197 * 180.26270 * 19 18 16 21 21 Cl 1.73597 * 126.06155 * 180.02562 * 20 19 18 22 22 C 1.35721 * 107.87377 * 0.02562 * 20 19 18 23 23 Cl 1.73599 * 125.58559 * 179.97438 * 22 20 19 24 24 N 1.35664 * 108.83157 * 0.02562 * 22 20 19 25 25 H 0.97000 * 125.69663 * 180.02562 * 24 22 20 26 26 C 1.47473 * 125.62894 * 179.97438 * 9 7 2 27 27 H 0.96998 * 119.99906 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.88348 * 59.55408 * 10 9 7 29 29 H 1.09001 * 110.01378 * 298.46296 * 10 9 7 30 30 H 1.09004 * 110.72208 * 219.44193 * 11 10 9 31 31 H 1.08999 * 110.86958 * 96.24138 * 11 10 9 32 32 H 1.08997 * 109.46818 * 58.17582 * 14 12 11 33 33 H 1.09008 * 109.47074 * 298.18380 * 14 12 11 34 34 H 0.96998 * 120.00299 * 0.02562 * 15 14 12 35 35 H 1.07997 * 126.43474 * 0.24604 * 19 18 16 36 36 H 1.09001 * 110.34896 * 85.25626 * 26 9 7 37 37 H 1.09000 * 110.40679 * 322.91632 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0264 12 6 0.8514 -4.6560 -0.6122 13 1 0.8553 -4.5966 -1.7006 14 6 1.0369 -6.1008 -0.1442 15 7 2.2483 -6.6588 -0.7502 16 6 2.6140 -7.9276 -0.4799 17 8 1.9381 -8.6096 0.2680 18 6 3.8255 -8.4859 -1.0865 19 6 4.3203 -9.7594 -0.8956 20 6 5.4894 -9.8651 -1.6548 21 17 6.5086 -11.2655 -1.7721 22 6 5.6862 -8.6787 -2.2839 23 17 7.0076 -8.3056 -3.3462 24 7 4.6819 -7.8318 -1.9456 25 1 4.5823 -6.9187 -2.2576 26 6 1.9341 -3.7314 -0.0016 27 1 -0.4850 0.8400 0.0004 28 1 -0.5582 -2.0520 -0.8826 29 1 -0.5561 -2.0842 0.9014 30 1 -1.2990 -4.2514 -0.6758 31 1 -0.6326 -4.4206 0.9798 32 1 0.1735 -6.6939 -0.4455 33 1 1.1309 -6.1218 0.9416 34 1 2.7872 -6.1152 -1.3459 35 1 3.8862 -10.5299 -0.2758 36 1 2.1683 -4.0422 1.0166 37 1 2.8328 -3.7410 -0.6183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028718835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:37 Heat of formation + Delta-G solvation = 17.728761 kcal Electronic energy + Delta-G solvation = -22831.123631 eV Core-core repulsion = 19082.504851 eV Total energy + Delta-G solvation = -3748.618780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.90071 -39.47330 -37.73007 -37.23395 -36.81664 -34.91665 -32.68294 -31.58729 -30.32988 -29.41515 -28.21331 -25.71473 -24.07801 -22.72906 -21.24795 -20.82455 -20.26591 -20.07825 -19.09843 -16.98392 -16.56462 -16.21921 -15.92616 -15.27667 -15.08385 -14.76213 -14.52497 -14.29019 -13.86206 -13.67784 -13.59649 -13.19543 -12.45529 -12.31718 -12.24534 -12.07665 -11.85404 -11.83630 -11.51253 -11.26855 -10.97463 -10.87783 -10.65355 -10.33860 -10.13415 -10.01594 -9.93873 -9.74418 -9.46653 -9.25800 -8.67712 -8.65459 -6.91597 -5.78801 -3.12866 0.80304 1.02354 1.71766 1.80918 2.69754 2.98447 3.01337 3.34215 3.39682 3.42266 4.37084 4.41895 4.47604 4.89848 5.01361 5.10367 5.20837 5.29788 5.45633 5.57242 5.74524 5.76991 5.90526 5.93262 5.97641 6.18048 6.23990 6.36688 6.43713 6.46786 6.56280 6.78846 7.23149 7.48459 7.55168 7.75583 7.89000 8.18238 9.14383 9.74638 10.40029 11.32909 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.002440 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.511742 B =11470.619924 C =12862.823727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.080 0.920 14 C 0.133 3.867 15 N -0.721 5.721 16 C 0.588 3.412 17 O -0.521 6.521 18 C -0.013 4.013 19 C -0.088 4.088 20 C -0.100 4.100 21 Cl -0.028 7.028 22 C 0.099 3.901 23 Cl 0.005 6.995 24 N -0.521 5.521 25 H 0.429 0.571 26 C 0.142 3.858 27 H 0.252 0.748 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.396 0.604 35 H 0.169 0.831 36 H 0.020 0.980 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.777 -19.735 -6.196 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.098 0.902 14 C 0.010 3.990 15 N -0.371 5.371 16 C 0.374 3.626 17 O -0.397 6.397 18 C -0.127 4.127 19 C -0.114 4.114 20 C -0.134 4.134 21 Cl 0.000 7.000 22 C -0.046 4.046 23 Cl 0.034 6.966 24 N -0.122 5.122 25 H 0.269 0.731 26 C 0.016 3.984 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.230 0.770 35 H 0.186 0.814 36 H 0.038 0.962 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.360 -19.885 -5.771 22.723 hybrid contribution 0.973 1.666 -0.656 2.037 sum 10.332 -18.219 -6.427 21.909 Atomic orbital electron populations 1.69973 1.04896 1.25018 1.56925 1.24817 0.95740 0.97741 1.02130 0.86047 0.78680 0.83721 0.77306 1.20521 1.21714 1.21678 1.19080 0.90409 0.82406 1.44000 0.90465 1.44488 1.01730 0.99801 1.87210 1.21152 0.84273 0.88141 1.01229 1.22858 0.95276 0.99378 0.99792 1.22643 0.98913 0.91828 1.00536 0.90203 1.21508 0.85528 0.93653 0.98354 1.45974 1.28565 1.12898 1.49667 1.16792 0.82865 0.81849 0.81133 1.90888 1.52940 1.59617 1.36217 1.20538 0.96025 0.94183 1.01967 1.21152 0.93808 0.95680 1.00757 1.19610 0.98064 0.89345 1.06430 1.98354 1.66338 1.37779 1.97507 1.20601 0.90737 0.91165 1.02078 1.98439 1.41447 1.94558 1.62174 1.41938 1.19005 1.14261 1.37037 0.73052 1.21585 0.93780 0.86317 0.96765 0.93727 0.93515 0.93804 0.91873 0.92059 0.91083 0.90770 0.77019 0.81395 0.96211 0.94902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 10.31 55.49 0.57 -25.92 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.23 10.28 -15.06 -0.15 -6.38 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.61 -14.76 3.40 -170.03 -0.58 -15.33 16 10 C 0.18 4.10 5.37 -3.06 -0.02 4.08 16 11 C -0.13 -2.29 6.42 -24.90 -0.16 -2.45 16 12 C -0.12 -1.80 3.07 -88.47 -0.27 -2.07 16 13 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 14 C 0.13 1.69 5.12 -4.04 -0.02 1.67 16 15 N -0.72 -7.91 5.44 -61.66 -0.34 -8.25 16 16 C 0.59 7.14 7.78 -12.91 -0.10 7.04 16 17 O -0.52 -8.07 16.88 5.18 0.09 -7.99 16 18 C -0.01 -0.13 7.06 -81.93 -0.58 -0.71 16 19 C -0.09 -0.88 10.64 -39.10 -0.42 -1.30 16 20 C -0.10 -0.96 6.66 -39.90 -0.27 -1.22 16 21 Cl -0.03 -0.25 29.12 -51.86 -1.51 -1.76 16 22 C 0.10 0.87 7.75 -16.76 -0.13 0.74 16 23 Cl 0.01 0.04 29.13 -51.86 -1.51 -1.47 16 24 N -0.52 -4.19 6.01 -6.51 -0.04 -4.23 16 25 H 0.43 2.43 8.19 -40.82 -0.33 2.09 16 26 C 0.14 2.65 6.56 -2.50 -0.02 2.63 16 27 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 29 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.03 8.04 -51.92 -0.42 0.61 16 34 H 0.40 3.50 7.56 -40.82 -0.31 3.20 16 35 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -31.46 344.78 -9.69 -41.15 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.32 Total: 0.30 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.23 Total: 1.73 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.38 Total: -53.74 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -3.02 Total: -3.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.46 -9.69 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028718835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.879 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds