Wall clock time and date at job start Tue Mar 31 2020 16:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99912 * 2 1 4 4 H 1.48504 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47173 * 299.99945 * 3 2 1 6 6 H 1.48505 * 109.47163 * 60.00287 * 3 2 1 7 7 C 1.38810 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99689 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00150 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64946 * 359.97438 * 9 7 2 11 11 C 1.54323 * 107.27222 * 178.97087 * 10 9 7 12 12 C 1.55153 * 102.94193 * 337.80469 * 11 10 9 13 13 H 1.08997 * 111.00896 * 277.38598 * 12 11 10 14 14 C 1.53007 * 111.00409 * 153.57516 * 12 11 10 15 15 N 1.46491 * 109.47350 * 178.18187 * 14 12 11 16 16 C 1.34780 * 120.00052 * 180.02562 * 15 14 12 17 17 O 1.21711 * 119.99939 * 359.97438 * 16 15 14 18 18 C 1.46541 * 120.00004 * 179.97438 * 16 15 14 19 19 C 1.37955 * 126.22408 * 179.68583 * 18 16 15 20 20 C 1.39797 * 107.13197 * 180.26270 * 19 18 16 21 21 Cl 1.73597 * 126.06155 * 180.02562 * 20 19 18 22 22 C 1.35721 * 107.87377 * 0.02562 * 20 19 18 23 23 Cl 1.73599 * 125.58559 * 179.97438 * 22 20 19 24 24 N 1.35664 * 108.83157 * 0.02562 * 22 20 19 25 25 H 0.97000 * 125.69663 * 180.02562 * 24 22 20 26 26 C 1.47473 * 125.62894 * 179.97438 * 9 7 2 27 27 H 0.96998 * 119.99906 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.88348 * 59.55408 * 10 9 7 29 29 H 1.09001 * 110.01378 * 298.46296 * 10 9 7 30 30 H 1.09004 * 110.72208 * 219.44193 * 11 10 9 31 31 H 1.08999 * 110.86958 * 96.24138 * 11 10 9 32 32 H 1.08997 * 109.46818 * 58.17582 * 14 12 11 33 33 H 1.09008 * 109.47074 * 298.18380 * 14 12 11 34 34 H 0.96998 * 120.00299 * 0.02562 * 15 14 12 35 35 H 1.07997 * 126.43474 * 0.24604 * 19 18 16 36 36 H 1.09001 * 110.34896 * 85.25626 * 26 9 7 37 37 H 1.09000 * 110.40679 * 322.91632 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0264 12 6 0.8514 -4.6560 -0.6122 13 1 0.8553 -4.5966 -1.7006 14 6 1.0369 -6.1008 -0.1442 15 7 2.2483 -6.6588 -0.7502 16 6 2.6140 -7.9276 -0.4799 17 8 1.9381 -8.6096 0.2680 18 6 3.8255 -8.4859 -1.0865 19 6 4.3203 -9.7594 -0.8956 20 6 5.4894 -9.8651 -1.6548 21 17 6.5086 -11.2655 -1.7721 22 6 5.6862 -8.6787 -2.2839 23 17 7.0076 -8.3056 -3.3462 24 7 4.6819 -7.8318 -1.9456 25 1 4.5823 -6.9187 -2.2576 26 6 1.9341 -3.7314 -0.0016 27 1 -0.4850 0.8400 0.0004 28 1 -0.5582 -2.0520 -0.8826 29 1 -0.5561 -2.0842 0.9014 30 1 -1.2990 -4.2514 -0.6758 31 1 -0.6326 -4.4206 0.9798 32 1 0.1735 -6.6939 -0.4455 33 1 1.1309 -6.1218 0.9416 34 1 2.7872 -6.1152 -1.3459 35 1 3.8862 -10.5299 -0.2758 36 1 2.1683 -4.0422 1.0166 37 1 2.8328 -3.7410 -0.6183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028718835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:36 Heat of formation + Delta-G solvation = -2.651746 kcal Electronic energy + Delta-G solvation = -22832.007396 eV Core-core repulsion = 19082.504851 eV Total energy + Delta-G solvation = -3749.502545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.65027 -40.48695 -39.20051 -37.91061 -37.51793 -36.16910 -34.38955 -32.37903 -31.77298 -30.65041 -29.56432 -27.31142 -25.55048 -23.73363 -22.12967 -21.88649 -21.56563 -21.35449 -20.11789 -18.80978 -17.49142 -17.35145 -16.79348 -16.69682 -16.28629 -15.85936 -15.65497 -15.57932 -15.04731 -14.64406 -14.60403 -14.41815 -13.97762 -13.82899 -13.45184 -13.06778 -13.00075 -12.87475 -12.76386 -12.67085 -12.49434 -12.01560 -11.98369 -11.93814 -11.86675 -11.56266 -11.46711 -11.28820 -10.71871 -10.29663 -10.14177 -9.39412 -8.89912 -7.85848 -5.21073 0.01983 0.32552 1.02116 1.05271 1.45541 1.46366 1.56265 1.87506 2.12119 2.20569 2.48645 3.32904 3.57712 3.61193 3.72094 3.82956 4.01370 4.03005 4.21475 4.43241 4.46972 4.62851 4.70707 4.80613 4.91065 5.01462 5.03437 5.09276 5.18981 5.27373 5.43241 5.46005 5.68558 5.78978 5.85544 6.20097 6.35935 6.97800 7.10232 7.78154 8.41863 9.24769 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.002440 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.511742 B =11470.619924 C =12862.823727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.239 4.239 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.182 3.818 11 C -0.122 4.122 12 C -0.096 4.096 13 H 0.092 0.908 14 C 0.144 3.856 15 N -0.712 5.712 16 C 0.593 3.407 17 O -0.557 6.557 18 C -0.021 4.021 19 C -0.091 4.091 20 C -0.111 4.111 21 Cl -0.025 7.025 22 C 0.105 3.895 23 Cl 0.017 6.983 24 N -0.508 5.508 25 H 0.441 0.559 26 C 0.136 3.864 27 H 0.246 0.754 28 H 0.012 0.988 29 H 0.002 0.998 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.408 0.592 35 H 0.170 0.830 36 H 0.019 0.981 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.223 -20.840 -7.122 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.223 1.223 7 C -0.368 4.368 8 H 0.102 0.898 9 N -0.355 5.355 10 C 0.057 3.943 11 C -0.161 4.161 12 C -0.116 4.116 13 H 0.110 0.890 14 C 0.021 3.979 15 N -0.362 5.362 16 C 0.380 3.620 17 O -0.436 6.436 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.146 4.146 21 Cl 0.003 6.997 22 C -0.041 4.041 23 Cl 0.045 6.955 24 N -0.110 5.110 25 H 0.283 0.717 26 C 0.011 3.989 27 H 0.055 0.945 28 H 0.030 0.970 29 H 0.021 0.979 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.244 0.756 35 H 0.188 0.812 36 H 0.037 0.963 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.846 -20.995 -6.720 24.568 hybrid contribution 0.599 1.970 -0.378 2.093 sum 11.444 -19.025 -7.098 23.309 Atomic orbital electron populations 1.70197 1.06316 1.25129 1.58498 1.25651 0.96593 1.01062 1.02851 0.85040 0.78292 0.79595 0.76594 1.18811 1.21934 1.22272 1.19495 0.91030 0.83738 1.42542 0.89805 1.44818 1.02490 1.01256 1.86971 1.20921 0.83830 0.91959 0.97634 1.22714 0.97189 0.94809 1.01408 1.22438 0.96005 0.92269 1.00862 0.88964 1.21270 0.86705 0.92064 0.97907 1.45806 1.28159 1.12764 1.49516 1.16895 0.82927 0.81639 0.80491 1.90874 1.54241 1.60531 1.37936 1.20165 0.95958 0.94409 1.02984 1.21282 0.93958 0.95841 1.00687 1.19687 0.98222 0.89874 1.06834 1.98354 1.66152 1.37644 1.97504 1.20679 0.90810 0.91013 1.01601 1.98449 1.40841 1.94460 1.61710 1.41852 1.18242 1.14666 1.36251 0.71652 1.21799 0.95372 0.84402 0.97302 0.94494 0.96963 0.97936 0.89539 0.90936 0.89924 0.91578 0.75572 0.81207 0.96309 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.59 10.31 21.65 0.22 -56.37 16 2 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 3 Si 0.98 44.83 29.55 68.60 2.03 46.86 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.24 -12.92 10.28 84.03 0.86 -12.05 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -30.62 3.40 -691.84 -2.35 -32.97 16 10 C 0.18 8.59 5.37 86.73 0.47 9.06 16 11 C -0.12 -4.00 6.42 31.78 0.20 -3.79 16 12 C -0.10 -2.65 3.07 -9.40 -0.03 -2.68 16 13 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 14 C 0.14 3.28 5.12 86.38 0.44 3.72 16 15 N -0.71 -13.69 5.44 -467.21 -2.54 -16.24 16 16 C 0.59 13.24 7.78 86.41 0.67 13.91 16 17 O -0.56 -16.52 16.88 -4.38 -0.07 -16.59 16 18 C -0.02 -0.38 7.06 40.30 0.28 -0.10 16 19 C -0.09 -1.70 10.64 22.58 0.24 -1.46 16 20 C -0.11 -1.95 6.66 22.06 0.15 -1.81 16 21 Cl -0.03 -0.41 29.12 -2.72 -0.08 -0.49 16 22 C 0.10 1.63 7.75 83.52 0.65 2.27 16 23 Cl 0.02 0.23 29.13 -2.72 -0.08 0.15 16 24 N -0.51 -6.94 6.01 -174.51 -1.05 -7.98 16 25 H 0.44 3.71 8.19 -92.71 -0.76 2.95 16 26 C 0.14 4.84 6.56 86.85 0.57 5.41 16 27 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.01 0.65 7.38 -2.38 -0.02 0.63 16 29 H 0.00 0.13 7.51 -2.39 -0.02 0.11 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.22 8.04 -2.39 -0.02 2.20 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.67 8.04 -2.38 -0.02 1.66 16 34 H 0.41 5.90 7.56 -92.71 -0.70 5.20 16 35 H 0.17 3.02 8.06 -2.91 -0.02 2.99 16 36 H 0.02 0.69 7.96 -2.39 -0.02 0.68 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -69.23 344.78 0.72 -68.50 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -0.33 Total: 6.02 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 4.97 Total: 9.11 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -5.72 Total: -113.56 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.07 Total: -16.59 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.16 Total: -0.34 kcal Total: -69.23 0.72 -68.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028718835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.850 kcal (2) G-P(sol) polarization free energy of solvation -69.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds