Wall clock time and date at job start Tue Mar 31 2020 16:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48503 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47165 * 299.99639 * 3 2 1 6 6 H 1.48493 * 109.47465 * 60.00037 * 3 2 1 7 7 C 1.38813 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99895 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00564 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64542 * 359.69503 * 9 7 2 11 11 C 1.54910 * 104.83231 * 156.13438 * 10 9 7 12 12 C 1.55160 * 101.58122 * 37.00939 * 11 10 9 13 13 H 1.09002 * 110.71871 * 82.86501 * 12 11 10 14 14 C 1.52996 * 110.71864 * 206.13184 * 12 11 10 15 15 N 1.46498 * 109.47108 * 179.97438 * 14 12 11 16 16 C 1.34780 * 120.00246 * 180.02562 * 15 14 12 17 17 O 1.21714 * 119.99821 * 0.02562 * 16 15 14 18 18 C 1.46534 * 120.00192 * 180.02562 * 16 15 14 19 19 C 1.37964 * 126.22570 * 179.97438 * 18 16 15 20 20 C 1.39793 * 107.13239 * 179.97438 * 19 18 16 21 21 Cl 1.73595 * 126.06488 * 179.97438 * 20 19 18 22 22 C 1.35727 * 107.87373 * 0.02562 * 20 19 18 23 23 Cl 1.73600 * 125.58535 * 179.97438 * 22 20 19 24 24 N 1.35670 * 108.83076 * 359.72996 * 22 20 19 25 25 H 0.97001 * 125.69403 * 180.28568 * 24 22 20 26 26 C 1.47026 * 125.65326 * 180.02562 * 9 7 2 27 27 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.36478 * 274.97390 * 10 9 7 29 29 H 1.08998 * 110.36859 * 37.29768 * 10 9 7 30 30 H 1.08991 * 111.00552 * 278.93287 * 11 10 9 31 31 H 1.09004 * 111.03615 * 155.09334 * 11 10 9 32 32 H 1.09003 * 109.47550 * 299.97884 * 14 12 11 33 33 H 1.09000 * 109.47105 * 59.97868 * 14 12 11 34 34 H 0.96999 * 120.00294 * 0.02562 * 15 14 12 35 35 H 1.08001 * 126.43467 * 0.02809 * 19 18 16 36 36 H 1.09004 * 109.87531 * 300.21350 * 26 9 7 37 37 H 1.08996 * 109.88343 * 61.22069 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0064 11 6 -0.4045 -3.9332 -0.6022 12 6 0.7781 -4.7525 -0.0213 13 1 0.5502 -5.0966 0.9875 14 6 1.1186 -5.9328 -0.9333 15 7 2.2370 -6.6858 -0.3604 16 6 2.7123 -7.7749 -0.9965 17 8 2.2126 -8.1324 -2.0472 18 6 3.8307 -8.5285 -0.4232 19 6 4.4154 -9.6560 -0.9619 20 6 5.4393 -10.0441 -0.0929 21 17 6.4930 -11.4081 -0.2996 22 6 5.4629 -9.1658 0.9416 23 17 6.5587 -9.2188 2.2870 24 7 4.4933 -8.2365 0.7494 25 1 4.2978 -7.4921 1.3397 26 6 1.9316 -3.7276 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 -0.5227 -2.4852 1.0265 29 1 -0.6022 -1.7598 -0.6083 30 1 -0.3599 -3.9007 -1.6907 31 1 -1.3604 -4.3336 -0.2642 32 1 0.2498 -6.5848 -1.0235 33 1 1.3980 -5.5613 -1.9193 34 1 2.6355 -6.4007 0.4767 35 1 4.1352 -10.1463 -1.8825 36 1 2.5544 -3.8525 -0.8864 37 1 2.5340 -3.8619 0.8978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028718836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:40 Heat of formation + Delta-G solvation = 19.057469 kcal Electronic energy + Delta-G solvation = -22852.091265 eV Core-core repulsion = 19103.530103 eV Total energy + Delta-G solvation = -3748.561163 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.89899 -39.47551 -37.73820 -37.23729 -36.81600 -34.91009 -32.69394 -31.58628 -30.32726 -29.42316 -28.17695 -25.73275 -24.07563 -22.72784 -21.25112 -20.84227 -20.33373 -19.94437 -19.08911 -17.00083 -16.59178 -16.18232 -15.91399 -15.34615 -15.10705 -14.80350 -14.50508 -14.30572 -13.85238 -13.67774 -13.64303 -12.99427 -12.61875 -12.31782 -12.19847 -11.88612 -11.84952 -11.80140 -11.59953 -11.26801 -11.02813 -10.88052 -10.65549 -10.34657 -10.14445 -10.08909 -9.88361 -9.61088 -9.46457 -9.25303 -8.72811 -8.65369 -6.91939 -5.72967 -3.15167 0.80477 1.02000 1.71787 1.81138 2.69860 2.98822 3.02078 3.34636 3.40247 3.42684 4.36998 4.41589 4.47933 4.89933 5.02426 5.12614 5.21105 5.27798 5.44011 5.57954 5.74800 5.76008 5.92801 5.95802 5.99370 6.18324 6.24616 6.42121 6.46732 6.49221 6.59384 6.78135 7.23685 7.42920 7.55264 7.78089 7.89826 8.28826 9.14399 9.75270 10.39281 11.30999 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.017586 B = 0.002387 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.808056 B =11728.868923 C =12764.504329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.134 4.134 12 C -0.116 4.116 13 H 0.076 0.924 14 C 0.133 3.867 15 N -0.721 5.721 16 C 0.588 3.412 17 O -0.520 6.520 18 C -0.013 4.013 19 C -0.088 4.088 20 C -0.099 4.099 21 Cl -0.028 7.028 22 C 0.098 3.902 23 Cl 0.005 6.995 24 N -0.521 5.521 25 H 0.429 0.571 26 C 0.141 3.859 27 H 0.252 0.748 28 H 0.012 0.988 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.396 0.604 35 H 0.169 0.831 36 H 0.024 0.976 37 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.800 -20.957 3.089 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.026 3.974 11 C -0.174 4.174 12 C -0.136 4.136 13 H 0.095 0.905 14 C 0.010 3.990 15 N -0.371 5.371 16 C 0.373 3.627 17 O -0.396 6.396 18 C -0.127 4.127 19 C -0.114 4.114 20 C -0.134 4.134 21 Cl 0.000 7.000 22 C -0.046 4.046 23 Cl 0.034 6.966 24 N -0.123 5.123 25 H 0.269 0.731 26 C 0.015 3.985 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.229 0.771 35 H 0.186 0.814 36 H 0.042 0.958 37 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 8.504 -20.933 2.494 22.732 hybrid contribution 0.884 1.260 1.100 1.892 sum 9.389 -19.674 3.594 22.093 Atomic orbital electron populations 1.69798 1.04913 1.24774 1.57490 1.24798 0.95749 0.97797 1.02284 0.85995 0.78638 0.83520 0.77315 1.20531 1.21635 1.21718 1.19105 0.90496 0.82447 1.43253 0.90505 1.44504 1.01992 0.99657 1.86836 1.21952 0.84653 0.92523 0.98249 1.23011 0.95419 0.98507 1.00437 1.22467 0.98538 0.93935 0.98617 0.90537 1.21558 0.87719 0.92192 0.97529 1.45982 1.36429 1.28297 1.26429 1.16794 0.81381 0.80166 0.84326 1.90891 1.58729 1.68200 1.21777 1.20544 1.00802 1.01510 0.89818 1.21156 0.94545 0.95244 1.00451 1.19610 1.00664 0.95596 0.97550 1.98354 1.63936 1.40689 1.96990 1.20600 0.94515 0.95018 0.94480 1.98437 1.58607 1.97644 1.41958 1.41934 1.26004 1.23862 1.20451 0.73083 1.21324 0.93437 0.86180 0.97599 0.93693 0.96982 0.87425 0.91689 0.91989 0.91062 0.90661 0.77076 0.81384 0.95776 0.96679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 10.09 55.49 0.56 -25.73 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.22 -6.10 10.27 -15.06 -0.15 -6.26 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.60 -14.82 3.39 -170.07 -0.58 -15.40 16 10 C 0.15 3.50 5.89 -2.53 -0.01 3.48 16 11 C -0.13 -2.34 6.53 -24.58 -0.16 -2.50 16 12 C -0.12 -1.76 3.02 -88.79 -0.27 -2.03 16 13 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 14 C 0.13 1.75 4.99 -4.04 -0.02 1.73 16 15 N -0.72 -8.09 5.40 -61.66 -0.33 -8.42 16 16 C 0.59 7.28 7.78 -12.92 -0.10 7.18 16 17 O -0.52 -8.22 16.88 5.18 0.09 -8.13 16 18 C -0.01 -0.13 7.06 -81.93 -0.58 -0.71 16 19 C -0.09 -0.89 10.64 -39.10 -0.42 -1.31 16 20 C -0.10 -0.96 6.66 -39.90 -0.27 -1.23 16 21 Cl -0.03 -0.25 29.12 -51.86 -1.51 -1.77 16 22 C 0.10 0.87 7.75 -16.75 -0.13 0.74 16 23 Cl 0.01 0.04 29.13 -51.86 -1.51 -1.47 16 24 N -0.52 -4.22 6.01 -6.51 -0.04 -4.26 16 25 H 0.43 2.42 8.19 -40.82 -0.33 2.09 16 26 C 0.14 2.67 6.52 -3.07 -0.02 2.65 16 27 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.11 2.84 5.87 -51.93 -0.30 2.54 16 30 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 34 H 0.40 3.54 7.45 -40.82 -0.30 3.24 16 35 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.02 0.47 7.77 -51.93 -0.40 0.07 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -31.27 343.79 -9.65 -40.92 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.27 Total: 1.08 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -2.22 Total: 1.36 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.39 Total: -53.80 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -3.02 Total: -3.24 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.27 -9.65 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028718836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.978 kcal (2) G-P(sol) polarization free energy of solvation -31.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds