Wall clock time and date at job start Tue Mar 31 2020 17:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35668 * 125.69500 * 2 1 4 4 Cl 1.73594 * 125.58493 * 359.97438 * 3 2 1 5 5 C 1.35725 * 108.82610 * 180.26745 * 3 2 1 6 6 Cl 1.73599 * 126.05812 * 179.75115 * 5 3 2 7 7 C 1.39788 * 107.87533 * 359.73315 * 5 3 2 8 8 C 1.37810 * 125.69408 * 179.80449 * 2 1 3 9 9 C 1.46543 * 126.21938 * 359.97438 * 8 2 1 10 10 O 1.21711 * 120.00410 * 4.67722 * 9 8 2 11 11 N 1.34781 * 119.99526 * 184.68618 * 9 8 2 12 12 C 1.46502 * 119.99723 * 185.01921 * 11 9 8 13 13 C 1.53000 * 109.47214 * 180.02562 * 12 11 9 14 14 C 1.53490 * 114.20612 * 175.00337 * 13 12 11 15 15 N 1.47061 * 87.98859 * 87.71584 * 14 13 12 16 16 C 1.36940 * 136.05850 * 207.08546 * 15 14 13 17 17 H 1.07997 * 119.99832 * 354.88353 * 16 15 14 18 18 C 1.38809 * 120.00226 * 174.88295 * 16 15 14 19 19 N 1.31614 * 120.00062 * 184.54783 * 18 16 15 20 20 Si 1.86801 * 119.99990 * 4.54831 * 18 16 15 21 21 H 1.48496 * 109.47285 * 174.35758 * 20 18 16 22 22 H 1.48502 * 109.47114 * 294.35839 * 20 18 16 23 23 H 1.48501 * 109.47051 * 54.35744 * 20 18 16 24 24 C 1.47063 * 87.88517 * 27.34218 * 15 14 13 25 25 H 1.09005 * 109.46953 * 275.04326 * 1 2 3 26 26 H 1.09002 * 109.47493 * 35.03869 * 1 2 3 27 27 H 1.09000 * 109.47607 * 155.04495 * 1 2 3 28 28 H 1.08001 * 126.43115 * 179.97438 * 7 5 3 29 29 H 0.96991 * 120.00200 * 5.02335 * 11 9 8 30 30 H 1.09000 * 109.47108 * 59.99653 * 12 11 9 31 31 H 1.09001 * 109.47068 * 300.00121 * 12 11 9 32 32 H 1.09003 * 113.28221 * 41.93087 * 13 12 11 33 33 H 1.09000 * 113.47121 * 332.92764 * 14 13 12 34 34 H 1.08999 * 113.51956 * 202.50509 * 14 13 12 35 35 H 0.97003 * 120.00337 * 5.00462 * 19 18 16 36 36 H 1.08995 * 113.47027 * 87.44265 * 24 15 14 37 37 H 1.09009 * 113.46742 * 217.88004 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2566 1.1018 0.0000 4 17 1.6994 2.7459 -0.0006 5 6 3.5554 0.7080 -0.0060 6 17 4.9405 1.7545 -0.0145 7 6 3.5800 -0.6897 -0.0037 8 6 2.2690 -1.1192 0.0038 9 6 1.8141 -2.5122 0.0091 10 8 0.6265 -2.7650 -0.0755 11 7 2.7108 -3.5136 0.1078 12 6 2.2683 -4.9062 0.0027 13 6 3.4739 -5.8369 0.1485 14 6 3.1170 -7.3294 0.1759 15 7 3.2039 -7.3241 -1.2921 16 6 2.6469 -8.0437 -2.3155 17 1 2.0181 -8.8943 -2.0977 18 6 2.8905 -7.6798 -3.6327 19 7 2.2847 -8.3147 -4.6136 20 14 4.0781 -6.2890 -4.0131 21 1 4.2676 -6.1879 -5.4825 22 1 3.5259 -5.0112 -3.4961 23 1 5.3851 -6.5625 -3.3632 24 6 4.1573 -6.2103 -1.1773 25 1 -0.3633 0.0903 1.0237 26 1 -0.3634 0.8414 -0.5900 27 1 -0.3634 -0.9317 -0.4336 28 1 4.4600 -1.3157 -0.0075 29 1 3.6491 -3.3122 0.2485 30 1 1.8004 -5.0664 -0.9687 31 1 1.5478 -5.1190 0.7924 32 1 4.1643 -5.5278 0.9333 33 1 2.1131 -7.5290 0.5506 34 1 3.8757 -7.9494 0.6534 35 1 1.6142 -8.9870 -4.4152 36 1 5.1910 -6.5344 -1.0565 37 1 4.0397 -5.4562 -1.9556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031713237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:22 Heat of formation + Delta-G solvation = 68.177162 kcal Electronic energy + Delta-G solvation = -23359.888373 eV Core-core repulsion = 19613.457201 eV Total energy + Delta-G solvation = -3746.431173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.90245 -39.53205 -38.47429 -37.15583 -36.76762 -34.77898 -33.15439 -32.39911 -30.16930 -28.61204 -26.93433 -26.02872 -25.42184 -22.96145 -21.87943 -21.12887 -20.19775 -19.17264 -18.20605 -17.46575 -16.49245 -16.33609 -16.20369 -15.37525 -15.13663 -14.84113 -14.63735 -14.16169 -13.93106 -13.80509 -13.54247 -13.42841 -13.14918 -12.84365 -12.56567 -12.22575 -11.80401 -11.75947 -11.69636 -11.65384 -11.24206 -11.17759 -10.84231 -10.43954 -10.33364 -10.06786 -9.24331 -9.16330 -9.14253 -9.00173 -8.92288 -8.53048 -7.17010 -6.31116 -3.24248 0.92484 1.09746 1.75194 1.87665 2.51545 3.09774 3.22322 3.37041 3.41984 3.63638 4.35903 4.44247 4.58137 4.66322 4.72559 4.87929 4.90506 5.07270 5.07743 5.27424 5.38404 5.44841 5.69027 5.81244 5.84352 6.07325 6.17469 6.19891 6.22270 6.30808 6.32361 6.34574 6.44154 6.78225 7.08854 7.40442 8.05348 8.23082 8.96842 9.49246 10.34062 11.20525 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.002968 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.074809 B = 9432.212740 C = 9746.256413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.394 5.394 3 C 0.089 3.911 4 Cl 0.001 6.999 5 C -0.096 4.096 6 Cl -0.031 7.031 7 C -0.122 4.122 8 C -0.010 4.010 9 C 0.588 3.412 10 O -0.540 6.540 11 N -0.708 5.708 12 C 0.148 3.852 13 C -0.147 4.147 14 C 0.133 3.867 15 N -0.627 5.627 16 C -0.303 4.303 17 H 0.082 0.918 18 C -0.024 4.024 19 N -0.935 5.935 20 Si 1.073 2.927 21 H -0.296 1.296 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.092 3.908 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.121 0.879 28 H 0.165 0.835 29 H 0.402 0.598 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.261 0.739 36 H 0.045 0.955 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 22.001 13.907 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.069 5.069 3 C -0.055 4.055 4 Cl 0.029 6.971 5 C -0.131 4.131 6 Cl -0.003 7.003 7 C -0.148 4.148 8 C -0.125 4.125 9 C 0.374 3.626 10 O -0.419 6.419 11 N -0.358 5.358 12 C 0.026 3.974 13 C -0.167 4.167 14 C 0.006 3.994 15 N -0.356 5.356 16 C -0.430 4.430 17 H 0.100 0.900 18 C -0.223 4.223 19 N -0.577 5.577 20 Si 0.906 3.094 21 H -0.223 1.223 22 H -0.220 1.220 23 H -0.217 1.217 24 C -0.033 4.033 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.139 0.861 28 H 0.183 0.817 29 H 0.237 0.763 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.427 22.647 12.369 25.844 hybrid contribution -0.115 -0.497 1.330 1.424 sum 1.312 22.150 13.699 26.077 Atomic orbital electron populations 1.22564 0.74368 1.06972 1.04553 1.43764 1.07553 1.03255 1.52307 1.20587 0.88994 0.82547 1.13416 1.98405 1.89897 1.11593 1.97174 1.19537 0.86465 0.91625 1.15437 1.98348 1.39273 1.65180 1.97469 1.21212 0.95720 0.92395 1.05513 1.20118 0.89197 0.87782 1.15363 1.16676 0.85896 0.82821 0.77198 1.90807 1.15929 1.84433 1.50740 1.45698 1.10927 1.06464 1.72705 1.21143 0.95906 0.76778 1.03599 1.23162 0.97285 0.96965 0.99247 1.22269 0.99145 0.91144 0.86870 1.46164 1.48375 1.39898 1.01180 1.20159 1.27143 1.10529 0.85126 0.90016 1.25675 1.03079 1.02985 0.90542 1.70909 1.27426 1.27399 1.32002 0.83689 0.75739 0.75145 0.74832 1.22335 1.21964 1.21694 1.22952 0.93927 0.91846 0.94568 0.89743 0.89425 0.86092 0.81740 0.76273 0.89549 0.90996 0.90029 0.93295 0.93980 0.92904 0.93771 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.54 59.85 0.63 1.14 16 2 N -0.39 -4.39 3.17 -116.64 -0.37 -4.76 16 3 C 0.09 0.94 7.39 -16.76 -0.12 0.82 16 4 Cl 0.00 0.01 28.61 -51.86 -1.48 -1.48 16 5 C -0.10 -1.03 6.66 -39.90 -0.27 -1.29 16 6 Cl -0.03 -0.30 29.12 -51.86 -1.51 -1.81 16 7 C -0.12 -1.27 10.33 -39.11 -0.40 -1.67 16 8 C -0.01 -0.12 6.89 -81.94 -0.56 -0.68 16 9 C 0.59 8.26 7.77 -12.91 -0.10 8.16 16 10 O -0.54 -9.14 14.57 5.18 0.08 -9.06 16 11 N -0.71 -9.08 5.53 -61.66 -0.34 -9.42 16 12 C 0.15 2.29 5.52 -4.04 -0.02 2.27 16 13 C -0.15 -2.23 4.17 -89.97 -0.37 -2.60 16 14 C 0.13 2.41 8.25 -8.52 -0.07 2.34 16 15 N -0.63 -14.82 3.53 -184.63 -0.65 -15.47 16 16 C -0.30 -8.64 11.09 -15.06 -0.17 -8.81 16 17 H 0.08 2.46 8.05 -52.49 -0.42 2.04 16 18 C -0.02 -0.72 5.50 -17.43 -0.10 -0.81 16 19 N -0.94 -29.61 13.70 55.49 0.76 -28.85 16 20 Si 1.07 26.72 25.12 -169.99 -4.27 22.44 16 21 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 22 H -0.29 -6.81 6.29 56.52 0.36 -6.46 16 23 H -0.29 -6.70 6.71 56.52 0.38 -6.32 16 24 C 0.09 1.81 5.45 -8.38 -0.05 1.76 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.63 7.91 -51.93 -0.41 0.22 16 27 H 0.12 1.32 5.97 -51.93 -0.31 1.01 16 28 H 0.17 1.28 7.48 -52.49 -0.39 0.89 16 29 H 0.40 3.93 7.41 -40.82 -0.30 3.62 16 30 H 0.09 1.70 7.93 -51.93 -0.41 1.29 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 36 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.06 1.18 4.00 -51.92 -0.21 0.97 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -33.73 339.27 -8.49 -42.22 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.21 Total: 0.45 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.60 Total: 0.62 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.60 Total: -58.49 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 26.72 SS G_CDS: -4.27 Total: 22.44 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -2.99 Total: -3.29 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.73 -8.49 -42.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031713237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.398 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds