Wall clock time and date at job start Tue Mar 31 2020 17:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35668 * 125.69500 * 2 1 4 4 Cl 1.73594 * 125.58493 * 359.97438 * 3 2 1 5 5 C 1.35725 * 108.82610 * 180.26745 * 3 2 1 6 6 Cl 1.73599 * 126.05812 * 179.75115 * 5 3 2 7 7 C 1.39788 * 107.87533 * 359.73315 * 5 3 2 8 8 C 1.37810 * 125.69408 * 179.80449 * 2 1 3 9 9 C 1.46543 * 126.21938 * 359.97438 * 8 2 1 10 10 O 1.21711 * 120.00410 * 4.67722 * 9 8 2 11 11 N 1.34781 * 119.99526 * 184.68618 * 9 8 2 12 12 C 1.46502 * 119.99723 * 185.01921 * 11 9 8 13 13 C 1.53000 * 109.47214 * 180.02562 * 12 11 9 14 14 C 1.53490 * 114.20612 * 175.00337 * 13 12 11 15 15 N 1.47061 * 87.98859 * 87.71584 * 14 13 12 16 16 C 1.36940 * 136.05850 * 207.08546 * 15 14 13 17 17 H 1.07997 * 119.99832 * 354.88353 * 16 15 14 18 18 C 1.38809 * 120.00226 * 174.88295 * 16 15 14 19 19 N 1.31614 * 120.00062 * 184.54783 * 18 16 15 20 20 Si 1.86801 * 119.99990 * 4.54831 * 18 16 15 21 21 H 1.48496 * 109.47285 * 174.35758 * 20 18 16 22 22 H 1.48502 * 109.47114 * 294.35839 * 20 18 16 23 23 H 1.48501 * 109.47051 * 54.35744 * 20 18 16 24 24 C 1.47063 * 87.88517 * 27.34218 * 15 14 13 25 25 H 1.09005 * 109.46953 * 275.04326 * 1 2 3 26 26 H 1.09002 * 109.47493 * 35.03869 * 1 2 3 27 27 H 1.09000 * 109.47607 * 155.04495 * 1 2 3 28 28 H 1.08001 * 126.43115 * 179.97438 * 7 5 3 29 29 H 0.96991 * 120.00200 * 5.02335 * 11 9 8 30 30 H 1.09000 * 109.47108 * 59.99653 * 12 11 9 31 31 H 1.09001 * 109.47068 * 300.00121 * 12 11 9 32 32 H 1.09003 * 113.28221 * 41.93087 * 13 12 11 33 33 H 1.09000 * 113.47121 * 332.92764 * 14 13 12 34 34 H 1.08999 * 113.51956 * 202.50509 * 14 13 12 35 35 H 0.97003 * 120.00337 * 5.00462 * 19 18 16 36 36 H 1.08995 * 113.47027 * 87.44265 * 24 15 14 37 37 H 1.09009 * 113.46742 * 217.88004 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2566 1.1018 0.0000 4 17 1.6994 2.7459 -0.0006 5 6 3.5554 0.7080 -0.0060 6 17 4.9405 1.7545 -0.0145 7 6 3.5800 -0.6897 -0.0037 8 6 2.2690 -1.1192 0.0038 9 6 1.8141 -2.5122 0.0091 10 8 0.6265 -2.7650 -0.0755 11 7 2.7108 -3.5136 0.1078 12 6 2.2683 -4.9062 0.0027 13 6 3.4739 -5.8369 0.1485 14 6 3.1170 -7.3294 0.1759 15 7 3.2039 -7.3241 -1.2921 16 6 2.6469 -8.0437 -2.3155 17 1 2.0181 -8.8943 -2.0977 18 6 2.8905 -7.6798 -3.6327 19 7 2.2847 -8.3147 -4.6136 20 14 4.0781 -6.2890 -4.0131 21 1 4.2676 -6.1879 -5.4825 22 1 3.5259 -5.0112 -3.4961 23 1 5.3851 -6.5625 -3.3632 24 6 4.1573 -6.2103 -1.1773 25 1 -0.3633 0.0903 1.0237 26 1 -0.3634 0.8414 -0.5900 27 1 -0.3634 -0.9317 -0.4336 28 1 4.4600 -1.3157 -0.0075 29 1 3.6491 -3.3122 0.2485 30 1 1.8004 -5.0664 -0.9687 31 1 1.5478 -5.1190 0.7924 32 1 4.1643 -5.5278 0.9333 33 1 2.1131 -7.5290 0.5506 34 1 3.8757 -7.9494 0.6534 35 1 1.6142 -8.9870 -4.4152 36 1 5.1910 -6.5344 -1.0565 37 1 4.0397 -5.4562 -1.9556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031713237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:21 Heat of formation + Delta-G solvation = 44.504541 kcal Electronic energy + Delta-G solvation = -23360.914895 eV Core-core repulsion = 19613.457201 eV Total energy + Delta-G solvation = -3747.457695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.73644 -40.79157 -39.80472 -37.90441 -37.52479 -35.97644 -34.57952 -33.89399 -31.35838 -30.05226 -27.68786 -27.48973 -26.94116 -24.19033 -23.37431 -21.97727 -21.36552 -20.51220 -19.52191 -19.05110 -17.48421 -17.40109 -17.22699 -16.93164 -16.40047 -16.01650 -15.72990 -15.46040 -15.15559 -15.04753 -14.79050 -14.48913 -14.17843 -14.14652 -13.38631 -13.34833 -13.17977 -13.02152 -12.95298 -12.51206 -12.45718 -12.34369 -12.19047 -12.00765 -11.87465 -11.25544 -11.21627 -11.00456 -10.80935 -10.23036 -9.93139 -9.36285 -9.15151 -8.61649 -5.43957 0.05003 0.31695 0.98575 1.06540 1.36510 1.48505 1.65447 1.67777 2.10650 2.26987 2.56018 3.09074 3.21223 3.42104 3.57766 3.65945 3.85407 3.89068 4.21326 4.32835 4.43714 4.47404 4.53587 4.61688 4.70075 4.74458 4.78254 4.88026 4.97105 5.07422 5.21329 5.29263 5.41274 5.49233 5.55438 5.98210 6.42536 6.73184 7.05639 7.36452 8.30846 8.93018 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.002968 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.074809 B = 9432.212740 C = 9746.256413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.399 5.399 3 C 0.089 3.911 4 Cl 0.015 6.985 5 C -0.109 4.109 6 Cl -0.023 7.023 7 C -0.106 4.106 8 C -0.033 4.033 9 C 0.587 3.413 10 O -0.578 6.578 11 N -0.695 5.695 12 C 0.155 3.845 13 C -0.110 4.110 14 C 0.126 3.874 15 N -0.665 5.665 16 C -0.285 4.285 17 H 0.046 0.954 18 C -0.090 4.090 19 N -0.977 5.977 20 Si 1.113 2.887 21 H -0.312 1.312 22 H -0.272 1.272 23 H -0.256 1.256 24 C 0.083 3.917 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.192 0.808 29 H 0.421 0.579 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.244 0.756 36 H 0.068 0.932 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.473 24.516 16.245 29.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.075 5.075 3 C -0.056 4.056 4 Cl 0.043 6.957 5 C -0.144 4.144 6 Cl 0.005 6.995 7 C -0.132 4.132 8 C -0.148 4.148 9 C 0.375 3.625 10 O -0.459 6.459 11 N -0.347 5.347 12 C 0.032 3.968 13 C -0.129 4.129 14 C 0.001 3.999 15 N -0.395 5.395 16 C -0.413 4.413 17 H 0.064 0.936 18 C -0.281 4.281 19 N -0.623 5.623 20 Si 0.940 3.060 21 H -0.240 1.240 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.041 4.041 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.209 0.791 29 H 0.259 0.741 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.930 25.176 14.795 29.465 hybrid contribution -0.946 -1.251 0.731 1.730 sum 2.984 23.926 15.526 28.678 Atomic orbital electron populations 1.22622 0.73729 1.06594 1.05614 1.43920 1.08129 1.03264 1.52146 1.20808 0.89207 0.83068 1.12489 1.98413 1.89795 1.10427 1.97055 1.19686 0.86779 0.92038 1.15868 1.98352 1.38726 1.64922 1.97460 1.21548 0.95788 0.92556 1.03327 1.19887 0.90047 0.86993 1.17831 1.16956 0.85446 0.83788 0.76327 1.90796 1.17593 1.85108 1.52448 1.45462 1.11794 1.05124 1.72297 1.20857 0.96288 0.78486 1.01190 1.22932 0.96975 0.94672 0.98298 1.22584 0.99930 0.93848 0.83579 1.46275 1.49941 1.40494 1.02758 1.20012 1.25443 1.08933 0.86884 0.93632 1.27046 1.04908 1.05295 0.90881 1.71016 1.29090 1.29031 1.33209 0.83238 0.75433 0.73341 0.74004 1.24031 1.19868 1.18097 1.23236 0.94438 0.89959 0.96472 0.88376 0.87648 0.88171 0.79084 0.74115 0.94343 0.90484 0.84218 0.93607 0.91406 0.94682 0.91467 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.94 10.54 127.77 1.35 2.28 16 2 N -0.40 -8.25 3.17 -522.94 -1.66 -9.91 16 3 C 0.09 1.70 7.39 83.52 0.62 2.32 16 4 Cl 0.01 0.23 28.61 -2.72 -0.08 0.15 16 5 C -0.11 -2.04 6.66 22.06 0.15 -1.89 16 6 Cl -0.02 -0.39 29.12 -2.72 -0.08 -0.47 16 7 C -0.11 -1.86 10.33 22.58 0.23 -1.63 16 8 C -0.03 -0.74 6.89 40.30 0.28 -0.46 16 9 C 0.59 15.63 7.77 86.41 0.67 16.30 16 10 O -0.58 -19.56 14.57 -4.38 -0.06 -19.63 16 11 N -0.70 -15.82 5.53 -467.19 -2.58 -18.40 16 12 C 0.16 4.48 5.52 86.38 0.48 4.95 16 13 C -0.11 -2.85 4.17 -10.37 -0.04 -2.89 16 14 C 0.13 4.21 8.25 83.17 0.69 4.90 16 15 N -0.67 -30.60 3.53 -738.05 -2.61 -33.21 16 16 C -0.28 -16.62 11.09 84.03 0.93 -15.69 16 17 H 0.05 2.90 8.05 -2.91 -0.02 2.87 16 18 C -0.09 -5.49 5.50 84.86 0.47 -5.02 16 19 N -0.98 -64.68 13.70 21.65 0.30 -64.38 16 20 Si 1.11 53.77 25.12 68.60 1.72 55.49 16 21 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 22 H -0.27 -12.06 6.29 99.48 0.63 -11.43 16 23 H -0.26 -10.81 6.71 99.48 0.67 -10.15 16 24 C 0.08 2.94 5.45 83.26 0.45 3.39 16 25 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.11 1.38 7.91 -2.39 -0.02 1.36 16 27 H 0.10 2.22 5.97 -2.39 -0.01 2.21 16 28 H 0.19 2.12 7.48 -2.91 -0.02 2.10 16 29 H 0.42 6.29 7.41 -92.71 -0.69 5.60 16 30 H 0.04 1.50 7.93 -2.39 -0.02 1.48 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.24 16.26 8.73 -92.71 -0.81 15.45 16 36 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 37 H 0.05 1.76 4.00 -2.38 -0.01 1.75 16 Total: -1.00 -77.71 339.27 1.49 -76.22 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.28 Total: 7.57 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.26 Total: 6.57 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -6.55 Total: -125.90 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.06 Total: -19.63 kcal Atomic # 14 Polarization: 53.77 SS G_CDS: 1.72 Total: 55.49 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.16 Total: -0.32 kcal Total: -77.71 1.49 -76.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031713237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.724 kcal (2) G-P(sol) polarization free energy of solvation -77.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds