Wall clock time and date at job start Tue Mar 31 2020 17:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99863 * 2 1 4 4 O 1.21706 * 119.99636 * 185.65074 * 3 2 1 5 5 C 1.46537 * 119.99822 * 5.64784 * 3 2 1 6 6 C 1.37958 * 126.22233 * 186.84334 * 5 3 2 7 7 C 1.39794 * 107.13125 * 180.02562 * 6 5 3 8 8 Cl 1.73601 * 126.06468 * 179.97438 * 7 6 5 9 9 C 1.35714 * 107.87493 * 359.97438 * 7 6 5 10 10 Cl 1.73606 * 125.58812 * 180.02562 * 9 7 6 11 11 N 1.35663 * 108.83175 * 359.73192 * 9 7 6 12 12 H 0.97005 * 125.70035 * 180.28467 * 11 9 7 13 13 C 1.46496 * 119.99933 * 180.02562 * 2 1 3 14 14 H 1.09004 * 110.78067 * 181.78532 * 13 2 1 15 15 C 1.55158 * 110.71889 * 305.02104 * 13 2 1 16 16 C 1.55129 * 101.48431 * 82.70132 * 15 13 2 17 17 N 1.47419 * 104.72420 * 37.29555 * 16 15 13 18 18 C 1.36935 * 125.64689 * 155.82256 * 17 16 15 19 19 H 1.07997 * 119.99994 * 189.95174 * 18 17 16 20 20 C 1.38816 * 120.00218 * 9.94742 * 18 17 16 21 21 N 1.31619 * 119.99736 * 10.26660 * 20 18 17 22 22 Si 1.86799 * 120.00114 * 190.26533 * 20 18 17 23 23 H 1.48504 * 109.46789 * 265.16614 * 22 20 18 24 24 H 1.48500 * 109.47096 * 25.16368 * 22 20 18 25 25 H 1.48500 * 109.47149 * 145.16474 * 22 20 18 26 26 C 1.47019 * 108.70408 * 335.55255 * 17 16 15 27 27 H 1.08996 * 109.47418 * 275.87039 * 1 2 3 28 28 H 1.09001 * 109.47561 * 35.87331 * 1 2 3 29 29 H 1.09001 * 109.47037 * 155.87455 * 1 2 3 30 30 H 1.08004 * 126.43480 * 0.02562 * 6 5 3 31 31 H 1.09006 * 111.00628 * 200.93950 * 15 13 2 32 32 H 1.09001 * 111.00597 * 324.75150 * 15 13 2 33 33 H 1.09002 * 110.49513 * 278.45143 * 16 15 13 34 34 H 1.09002 * 110.33976 * 156.06218 * 16 15 13 35 35 H 0.97005 * 119.99473 * 179.97438 * 21 20 18 36 36 H 1.08999 * 109.88514 * 120.70453 * 26 17 16 37 37 H 1.08998 * 109.88453 * 241.87230 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3515 1.1697 -0.1038 5 6 1.4115 2.4332 0.1249 6 6 1.9501 3.6979 0.0080 7 6 0.9069 4.6089 0.1978 8 17 1.0405 6.3392 0.1540 9 6 -0.2289 3.9008 0.4223 10 17 -1.8004 4.5779 0.7148 11 7 0.0637 2.5769 0.3742 12 1 -0.5694 1.8524 0.4975 13 6 2.1975 -1.2687 -0.0006 14 1 3.2730 -1.0943 0.0313 15 6 1.7507 -2.1610 1.1875 16 6 0.4680 -2.8189 0.6144 17 7 0.7745 -3.0618 -0.8070 18 6 0.1811 -4.0063 -1.6012 19 1 0.5824 -4.2170 -2.5815 20 6 -0.9362 -4.6931 -1.1464 21 7 -1.5462 -4.3030 -0.0473 22 14 -1.5740 -6.1711 -2.0942 23 1 -2.6515 -5.7380 -3.0199 24 1 -0.4643 -6.7752 -2.8744 25 1 -2.1133 -7.1748 -1.1418 26 6 1.8182 -2.1177 -1.2322 27 1 -0.3634 0.1051 1.0222 28 1 -0.3634 0.8327 -0.6022 29 1 -0.3633 -0.9379 -0.4200 30 1 2.9837 3.9389 -0.1924 31 1 2.5077 -2.9102 1.4198 32 1 1.5199 -1.5568 2.0649 33 1 -0.3823 -2.1435 0.7091 34 1 0.2645 -3.7602 1.1249 35 1 -2.3272 -4.7827 0.2703 36 1 2.6910 -2.6654 -1.5879 37 1 1.4350 -1.4730 -2.0231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033308196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:17 Heat of formation + Delta-G solvation = 55.745652 kcal Electronic energy + Delta-G solvation = -24010.482449 eV Core-core repulsion = 20263.512205 eV Total energy + Delta-G solvation = -3746.970244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.89223 -39.63464 -37.57077 -37.06581 -36.68432 -34.75736 -32.42768 -31.35539 -29.79064 -29.00172 -28.18912 -26.53673 -24.60637 -22.96197 -21.47311 -20.67947 -20.35482 -19.65441 -18.00860 -17.04068 -16.87036 -16.00427 -15.83391 -14.99266 -14.86184 -14.73966 -14.19051 -14.10676 -13.81481 -13.57499 -13.24501 -12.83788 -12.52037 -12.27338 -12.16606 -12.02762 -11.88446 -11.75840 -11.67052 -11.19736 -11.11912 -11.00160 -10.92755 -10.54400 -10.18592 -10.10774 -9.82799 -9.78221 -9.27975 -8.74698 -8.61534 -8.39858 -6.95954 -5.89574 -3.21703 1.00801 1.20510 1.88382 1.97655 2.80337 3.13106 3.22461 3.31380 3.38581 3.40096 4.34360 4.39190 4.63328 4.90209 5.10952 5.17982 5.28963 5.33855 5.38332 5.42124 5.56260 5.70274 5.89912 5.94980 6.07759 6.14079 6.21472 6.39118 6.40224 6.56888 6.65942 6.85142 7.27652 7.35967 7.43218 7.64632 8.06713 8.10858 9.05270 9.66666 10.32593 11.23684 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.003016 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.365683 B = 9282.512682 C =10215.625719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.589 5.589 3 C 0.587 3.413 4 O -0.527 6.527 5 C -0.007 4.007 6 C -0.092 4.092 7 C -0.099 4.099 8 Cl -0.033 7.033 9 C 0.091 3.909 10 Cl 0.001 6.999 11 N -0.525 5.525 12 H 0.434 0.566 13 C 0.127 3.873 14 H 0.106 0.894 15 C -0.157 4.157 16 C 0.163 3.837 17 N -0.602 5.602 18 C -0.231 4.231 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.919 5.919 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.280 1.280 25 H -0.290 1.290 26 C 0.125 3.875 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.167 0.833 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.253 0.747 36 H 0.037 0.963 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 16.993 3.371 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.320 5.320 3 C 0.375 3.625 4 O -0.403 6.403 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.134 4.134 8 Cl -0.004 7.004 9 C -0.054 4.054 10 Cl 0.030 6.970 11 N -0.134 5.134 12 H 0.284 0.716 13 C 0.024 3.976 14 H 0.123 0.877 15 C -0.197 4.197 16 C 0.038 3.962 17 N -0.329 5.329 18 C -0.359 4.359 19 H 0.094 0.906 20 C -0.201 4.201 21 N -0.566 5.566 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.206 1.206 25 H -0.216 1.216 26 C -0.001 4.001 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.185 0.815 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.024 16.837 3.363 17.288 hybrid contribution -1.177 -0.828 -0.355 1.482 sum 0.847 16.009 3.008 16.311 Atomic orbital electron populations 1.22551 0.80061 1.06274 1.01041 1.47703 1.06846 1.05737 1.71749 1.16890 0.86620 0.81642 0.77336 1.90843 1.12489 1.86265 1.50724 1.20507 0.81929 0.95735 1.13958 1.21109 0.99502 0.88148 1.03059 1.19607 0.92765 0.86224 1.14815 1.98341 1.98059 1.06537 1.97472 1.20696 0.88734 0.84509 1.11452 1.98424 1.21836 1.82225 1.94548 1.43285 1.09578 1.06204 1.54301 0.71645 1.22222 0.96575 0.81458 0.97302 0.87651 1.23417 1.01500 0.98516 0.96229 1.21687 0.90829 0.99187 0.84457 1.44532 1.43130 1.37930 1.07316 1.19014 1.07011 1.11442 0.98409 0.90580 1.24790 0.96917 1.00245 0.98174 1.69929 1.21557 1.41082 1.24008 0.86129 0.78636 0.82414 0.78732 1.21612 1.20561 1.21589 1.21664 0.93147 0.91374 0.93947 0.92352 0.92161 0.85333 0.81540 0.90581 0.91835 0.94682 0.91191 0.93637 0.94489 0.95324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 7.04 59.85 0.42 1.03 16 2 N -0.59 -9.00 2.82 -173.42 -0.49 -9.49 16 3 C 0.59 9.02 7.63 -12.91 -0.10 8.92 16 4 O -0.53 -9.41 16.28 5.18 0.08 -9.32 16 5 C -0.01 -0.09 6.65 -81.94 -0.54 -0.64 16 6 C -0.09 -1.12 10.65 -39.10 -0.42 -1.54 16 7 C -0.10 -1.14 6.66 -39.90 -0.27 -1.40 16 8 Cl -0.03 -0.34 29.12 -51.86 -1.51 -1.85 16 9 C 0.09 1.00 7.75 -16.76 -0.13 0.87 16 10 Cl 0.00 0.01 29.13 -51.86 -1.51 -1.50 16 11 N -0.52 -5.84 5.10 -6.51 -0.03 -5.87 16 12 H 0.43 4.28 4.87 -40.82 -0.20 4.08 16 13 C 0.13 2.15 3.57 -66.10 -0.24 1.91 16 14 H 0.11 1.77 7.02 -51.93 -0.36 1.40 16 15 C -0.16 -2.69 6.54 -24.46 -0.16 -2.85 16 16 C 0.16 3.48 4.54 -2.41 -0.01 3.47 16 17 N -0.60 -13.95 2.98 -169.94 -0.51 -14.46 16 18 C -0.23 -6.00 10.23 -15.06 -0.15 -6.15 16 19 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 20 C 0.00 -0.12 5.39 -17.43 -0.09 -0.21 16 21 N -0.92 -24.85 10.71 55.49 0.59 -24.25 16 22 Si 0.91 21.00 29.57 -169.99 -5.03 15.98 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.13 2.45 6.30 -3.06 -0.02 2.44 16 27 H 0.06 0.69 7.53 -51.93 -0.39 0.30 16 28 H 0.06 0.71 5.55 -51.93 -0.29 0.42 16 29 H 0.13 2.26 4.74 -51.93 -0.25 2.02 16 30 H 0.17 1.87 8.06 -52.48 -0.42 1.44 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.76 5.43 -51.93 -0.28 0.48 16 34 H 0.07 1.72 6.96 -51.93 -0.36 1.36 16 35 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -28.34 328.76 -8.94 -37.28 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -3.79 Total: 2.68 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -1.71 Total: 5.84 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.43 Total: -54.07 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -3.02 Total: -3.35 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.34 -8.94 -37.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033308196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.026 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds