Wall clock time and date at job start Tue Mar 31 2020 17:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99863 * 2 1 4 4 O 1.21706 * 119.99636 * 185.65074 * 3 2 1 5 5 C 1.46537 * 119.99822 * 5.64784 * 3 2 1 6 6 C 1.37958 * 126.22233 * 186.84334 * 5 3 2 7 7 C 1.39794 * 107.13125 * 180.02562 * 6 5 3 8 8 Cl 1.73601 * 126.06468 * 179.97438 * 7 6 5 9 9 C 1.35714 * 107.87493 * 359.97438 * 7 6 5 10 10 Cl 1.73606 * 125.58812 * 180.02562 * 9 7 6 11 11 N 1.35663 * 108.83175 * 359.73192 * 9 7 6 12 12 H 0.97005 * 125.70035 * 180.28467 * 11 9 7 13 13 C 1.46496 * 119.99933 * 180.02562 * 2 1 3 14 14 H 1.09004 * 110.78067 * 181.78532 * 13 2 1 15 15 C 1.55158 * 110.71889 * 305.02104 * 13 2 1 16 16 C 1.55129 * 101.48431 * 82.70132 * 15 13 2 17 17 N 1.47419 * 104.72420 * 37.29555 * 16 15 13 18 18 C 1.36935 * 125.64689 * 155.82256 * 17 16 15 19 19 H 1.07997 * 119.99994 * 189.95174 * 18 17 16 20 20 C 1.38816 * 120.00218 * 9.94742 * 18 17 16 21 21 N 1.31619 * 119.99736 * 10.26660 * 20 18 17 22 22 Si 1.86799 * 120.00114 * 190.26533 * 20 18 17 23 23 H 1.48504 * 109.46789 * 265.16614 * 22 20 18 24 24 H 1.48500 * 109.47096 * 25.16368 * 22 20 18 25 25 H 1.48500 * 109.47149 * 145.16474 * 22 20 18 26 26 C 1.47019 * 108.70408 * 335.55255 * 17 16 15 27 27 H 1.08996 * 109.47418 * 275.87039 * 1 2 3 28 28 H 1.09001 * 109.47561 * 35.87331 * 1 2 3 29 29 H 1.09001 * 109.47037 * 155.87455 * 1 2 3 30 30 H 1.08004 * 126.43480 * 0.02562 * 6 5 3 31 31 H 1.09006 * 111.00628 * 200.93950 * 15 13 2 32 32 H 1.09001 * 111.00597 * 324.75150 * 15 13 2 33 33 H 1.09002 * 110.49513 * 278.45143 * 16 15 13 34 34 H 1.09002 * 110.33976 * 156.06218 * 16 15 13 35 35 H 0.97005 * 119.99473 * 179.97438 * 21 20 18 36 36 H 1.08999 * 109.88514 * 120.70453 * 26 17 16 37 37 H 1.08998 * 109.88453 * 241.87230 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3515 1.1697 -0.1038 5 6 1.4115 2.4332 0.1249 6 6 1.9501 3.6979 0.0080 7 6 0.9069 4.6089 0.1978 8 17 1.0405 6.3392 0.1540 9 6 -0.2289 3.9008 0.4223 10 17 -1.8004 4.5779 0.7148 11 7 0.0637 2.5769 0.3742 12 1 -0.5694 1.8524 0.4975 13 6 2.1975 -1.2687 -0.0006 14 1 3.2730 -1.0943 0.0313 15 6 1.7507 -2.1610 1.1875 16 6 0.4680 -2.8189 0.6144 17 7 0.7745 -3.0618 -0.8070 18 6 0.1811 -4.0063 -1.6012 19 1 0.5824 -4.2170 -2.5815 20 6 -0.9362 -4.6931 -1.1464 21 7 -1.5462 -4.3030 -0.0473 22 14 -1.5740 -6.1711 -2.0942 23 1 -2.6515 -5.7380 -3.0199 24 1 -0.4643 -6.7752 -2.8744 25 1 -2.1133 -7.1748 -1.1418 26 6 1.8182 -2.1177 -1.2322 27 1 -0.3634 0.1051 1.0222 28 1 -0.3634 0.8327 -0.6022 29 1 -0.3633 -0.9379 -0.4200 30 1 2.9837 3.9389 -0.1924 31 1 2.5077 -2.9102 1.4198 32 1 1.5199 -1.5568 2.0649 33 1 -0.3823 -2.1435 0.7091 34 1 0.2645 -3.7602 1.1249 35 1 -2.3272 -4.7827 0.2703 36 1 2.6910 -2.6654 -1.5879 37 1 1.4350 -1.4730 -2.0231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033308196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:16 Heat of formation + Delta-G solvation = 40.274994 kcal Electronic energy + Delta-G solvation = -24011.153307 eV Core-core repulsion = 20263.512205 eV Total energy + Delta-G solvation = -3747.641102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.87201 -40.89621 -39.00636 -37.91354 -37.53194 -36.19451 -34.14576 -32.39327 -31.27743 -30.32220 -29.53232 -27.90256 -26.34463 -24.17555 -22.48711 -22.04944 -21.63667 -20.97854 -19.16166 -18.84880 -18.07219 -17.22096 -16.95611 -16.71424 -15.99080 -15.83315 -15.73932 -15.45233 -14.93801 -14.54431 -14.51568 -14.22466 -14.00443 -13.65847 -13.43479 -13.35241 -13.00902 -12.97615 -12.84761 -12.76704 -12.48542 -12.45081 -12.11093 -11.98040 -11.92089 -11.85979 -11.58617 -11.15040 -10.63474 -10.21384 -9.85216 -9.38995 -8.84762 -7.88921 -5.21196 0.00941 0.32932 1.01990 1.04225 1.47048 1.49318 1.57529 1.66779 2.03963 2.20831 2.49672 3.27227 3.32247 3.67307 3.72171 3.79975 3.83807 3.96572 4.17293 4.27557 4.30849 4.46391 4.58128 4.64074 4.69973 4.89269 4.98897 5.01934 5.06116 5.21803 5.44765 5.48380 5.60089 5.75127 5.80297 6.17901 6.21254 6.86481 7.09720 7.75306 8.40998 9.22453 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.003016 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.365683 B = 9282.512682 C =10215.625719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.590 5.590 3 C 0.592 3.408 4 O -0.555 6.555 5 C -0.023 4.023 6 C -0.086 4.086 7 C -0.108 4.108 8 Cl -0.023 7.023 9 C 0.099 3.901 10 Cl 0.017 6.983 11 N -0.518 5.518 12 H 0.439 0.561 13 C 0.140 3.860 14 H 0.112 0.888 15 C -0.140 4.140 16 C 0.169 3.831 17 N -0.617 5.617 18 C -0.243 4.243 19 H 0.073 0.927 20 C -0.052 4.052 21 N -0.939 5.939 22 Si 0.969 3.031 23 H -0.288 1.288 24 H -0.275 1.275 25 H -0.294 1.294 26 C 0.126 3.874 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.173 0.827 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.249 0.751 36 H 0.038 0.962 37 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 18.366 3.597 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.321 5.321 3 C 0.381 3.619 4 O -0.434 6.434 5 C -0.137 4.137 6 C -0.113 4.113 7 C -0.143 4.143 8 Cl 0.006 6.994 9 C -0.047 4.047 10 Cl 0.046 6.954 11 N -0.127 5.127 12 H 0.290 0.710 13 C 0.036 3.964 14 H 0.130 0.870 15 C -0.180 4.180 16 C 0.045 3.955 17 N -0.344 5.344 18 C -0.372 4.372 19 H 0.091 0.909 20 C -0.247 4.247 21 N -0.587 5.587 22 Si 0.798 3.202 23 H -0.215 1.215 24 H -0.200 1.200 25 H -0.220 1.220 26 C 0.000 4.000 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.191 0.809 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.944 18.222 3.585 18.673 hybrid contribution -1.179 -1.151 -0.449 1.708 sum 0.765 17.071 3.136 17.374 Atomic orbital electron populations 1.22503 0.79157 1.05151 1.02561 1.47683 1.07321 1.05289 1.71829 1.17058 0.86334 0.82041 0.76443 1.90825 1.13728 1.86704 1.52109 1.20114 0.82664 0.94846 1.16055 1.21269 1.00039 0.88007 1.01984 1.19669 0.92705 0.86838 1.15057 1.98347 1.98040 1.05564 1.97442 1.20830 0.89372 0.84351 1.10112 1.98438 1.20682 1.81943 1.94357 1.43168 1.09029 1.06500 1.53999 0.71030 1.21987 0.97046 0.81785 0.95575 0.86979 1.23272 0.99311 0.98573 0.96809 1.21539 0.92872 0.97555 0.83550 1.44707 1.43516 1.38180 1.08022 1.19275 1.07115 1.12105 0.98698 0.90912 1.25457 0.97446 1.02499 0.99253 1.70080 1.21698 1.41798 1.25102 0.85215 0.77995 0.79510 0.77464 1.21472 1.19997 1.22046 1.21721 0.92063 0.91087 0.95116 0.90150 0.90148 0.88896 0.80924 0.89995 0.89667 0.95099 0.94939 0.94203 0.94398 0.95993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.29 7.04 127.77 0.90 2.19 16 2 N -0.59 -17.27 2.82 -820.80 -2.32 -19.59 16 3 C 0.59 17.31 7.63 86.41 0.66 17.97 16 4 O -0.55 -19.18 16.28 -4.37 -0.07 -19.25 16 5 C -0.02 -0.56 6.65 40.30 0.27 -0.29 16 6 C -0.09 -1.94 10.65 22.58 0.24 -1.70 16 7 C -0.11 -2.25 6.66 22.06 0.15 -2.10 16 8 Cl -0.02 -0.42 29.12 -2.72 -0.08 -0.50 16 9 C 0.10 1.96 7.75 83.52 0.65 2.60 16 10 Cl 0.02 0.29 29.13 -2.72 -0.08 0.21 16 11 N -0.52 -10.38 5.10 -174.52 -0.89 -11.27 16 12 H 0.44 7.64 4.87 -92.70 -0.45 7.19 16 13 C 0.14 4.57 3.57 46.18 0.16 4.73 16 14 H 0.11 3.60 7.02 -2.38 -0.02 3.58 16 15 C -0.14 -4.64 6.54 32.06 0.21 -4.43 16 16 C 0.17 7.28 4.54 86.93 0.39 7.67 16 17 N -0.62 -28.92 2.98 -691.56 -2.06 -30.98 16 18 C -0.24 -12.79 10.23 84.03 0.86 -11.93 16 19 H 0.07 3.78 7.85 -2.91 -0.02 3.75 16 20 C -0.05 -2.78 5.39 84.86 0.46 -2.32 16 21 N -0.94 -51.63 10.71 21.65 0.23 -51.40 16 22 Si 0.97 43.53 29.57 68.60 2.03 45.56 16 23 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 26 C 0.13 4.93 6.30 86.73 0.55 5.48 16 27 H 0.08 1.76 7.53 -2.39 -0.02 1.74 16 28 H 0.08 1.77 5.55 -2.39 -0.01 1.75 16 29 H 0.09 3.25 4.74 -2.39 -0.01 3.24 16 30 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.03 1.36 5.43 -2.39 -0.01 1.35 16 34 H 0.03 1.63 6.96 -2.39 -0.02 1.61 16 35 H 0.25 13.41 8.31 -92.70 -0.77 12.64 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.02 0.89 8.04 -2.39 -0.02 0.87 16 Total: -1.00 -60.43 328.76 2.94 -57.48 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.69 Total: 11.86 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 5.49 Total: 17.87 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -5.03 Total: -113.23 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.07 Total: -19.25 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.16 Total: -0.29 kcal Total: -60.43 2.94 -57.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033308196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.758 kcal (2) G-P(sol) polarization free energy of solvation -60.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds