Wall clock time and date at job start Tue Mar 31 2020 16:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99899 * 2 1 4 4 H 1.48500 * 109.46934 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47324 * 300.00513 * 3 2 1 6 6 H 1.48508 * 109.47075 * 60.00517 * 3 2 1 7 7 C 1.38806 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99951 * 196.91583 * 7 2 1 9 9 N 1.36942 * 120.00378 * 16.91132 * 7 2 1 10 10 C 1.47144 * 120.97953 * 26.25787 * 9 7 2 11 11 C 1.53300 * 108.38460 * 129.44340 * 10 9 7 12 12 O 1.42956 * 109.26218 * 52.27823 * 11 10 9 13 13 C 1.42962 * 114.17085 * 297.50067 * 12 11 10 14 14 H 1.08996 * 109.51746 * 302.55172 * 13 12 11 15 15 C 1.52999 * 109.51343 * 182.44598 * 13 12 11 16 16 N 1.46499 * 109.47013 * 65.10220 * 15 13 12 17 17 C 1.34779 * 120.00381 * 179.97438 * 16 15 13 18 18 O 1.21627 * 119.99439 * 359.73009 * 17 16 15 19 19 C 1.47221 * 120.00228 * 179.72226 * 17 16 15 20 20 N 1.30595 * 125.53467 * 359.70596 * 19 17 16 21 21 C 1.30737 * 115.89992 * 179.77223 * 20 19 17 22 22 Cl 1.73600 * 122.12450 * 180.23634 * 21 20 19 23 23 C 1.34335 * 115.75427 * 0.51821 * 21 20 19 24 24 S 1.71068 * 109.09354 * 359.72131 * 23 21 20 25 25 C 1.47148 * 120.98202 * 206.24194 * 9 7 2 26 26 H 0.97001 * 120.00235 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.68736 * 249.16479 * 10 9 7 28 28 H 1.09002 * 109.68357 * 9.68469 * 10 9 7 29 29 H 1.08997 * 109.51296 * 172.22982 * 11 10 9 30 30 H 1.08996 * 109.51112 * 292.33121 * 11 10 9 31 31 H 1.08995 * 109.47182 * 305.10340 * 15 13 12 32 32 H 1.09002 * 109.47048 * 185.10498 * 15 13 12 33 33 H 0.96999 * 120.00019 * 359.72578 * 16 15 13 34 34 H 1.08005 * 125.45395 * 179.69521 * 23 21 20 35 35 H 1.08997 * 109.68660 * 110.83258 * 25 9 7 36 36 H 1.08998 * 109.68243 * 350.27123 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0552 -1.2225 0.2716 9 7 1.3700 -2.3623 -0.3460 10 6 0.1978 -2.3446 -1.2354 11 6 0.4257 -3.3657 -2.3559 12 8 0.7669 -4.6291 -1.7805 13 6 1.9823 -4.6203 -1.0277 14 1 2.8021 -4.2866 -1.6637 15 6 2.2755 -6.0314 -0.5142 16 7 2.5324 -6.9207 -1.6497 17 6 2.8160 -8.2210 -1.4367 18 8 2.8635 -8.6549 -0.3015 19 6 3.0681 -9.1160 -2.5781 20 7 3.0396 -8.7678 -3.8365 21 6 3.2975 -9.7170 -4.6977 22 17 3.3090 -9.4317 -6.4100 23 6 3.5472 -10.9284 -4.1737 24 16 3.4498 -10.8315 -2.4685 25 6 1.8341 -3.6634 0.1609 26 1 -0.4850 0.8400 0.0004 27 1 -0.6954 -2.6123 -0.6710 28 1 0.0770 -1.3496 -1.6637 29 1 -0.4852 -3.4683 -2.9456 30 1 1.2387 -3.0265 -2.9977 31 1 1.4173 -6.3990 0.0483 32 1 3.1515 -6.0074 0.1340 33 1 2.4948 -6.5745 -2.5550 34 1 3.7729 -11.8209 -4.7385 35 1 1.1056 -4.0638 0.8659 36 1 2.7972 -3.5420 0.6565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035484522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:56 Heat of formation + Delta-G solvation = -9.669503 kcal Electronic energy + Delta-G solvation = -23102.558148 eV Core-core repulsion = 19354.794997 eV Total energy + Delta-G solvation = -3747.763151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57950 -39.43491 -38.43413 -36.92942 -35.05837 -34.33851 -31.83209 -31.15265 -30.41983 -27.81377 -26.86358 -25.24360 -23.22145 -22.49463 -21.72166 -20.38293 -19.63804 -19.06843 -17.58496 -16.91845 -16.25065 -16.12742 -15.96131 -15.66709 -15.03035 -14.64027 -14.44804 -14.32839 -13.99730 -13.78829 -13.24702 -13.10867 -12.78368 -12.56062 -12.51255 -12.02271 -11.61091 -11.48193 -11.15112 -10.90442 -10.87140 -10.71328 -10.43445 -10.31881 -10.28457 -10.25260 -10.00366 -9.68714 -9.32449 -9.10224 -9.07674 -8.57099 -6.78613 -5.86903 -3.30709 -0.31264 0.52347 0.80228 1.72635 1.77901 2.84972 2.97293 3.32427 3.40513 3.42578 3.87917 4.20457 4.40678 4.45726 4.58279 5.03956 5.09465 5.30667 5.42830 5.47326 5.74963 5.76372 5.96057 6.12621 6.20465 6.34670 6.35559 6.45859 6.71217 6.73302 7.07762 7.31746 7.49690 7.68688 7.82494 7.89976 8.30564 9.08586 9.71303 10.27789 11.21239 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.020805 B = 0.002444 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.498386 B =11454.695924 C =12180.824154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.389 6.389 13 C 0.064 3.936 14 H 0.061 0.939 15 C 0.129 3.871 16 N -0.688 5.688 17 C 0.595 3.405 18 O -0.528 6.528 19 C 0.001 3.999 20 N -0.419 5.419 21 C 0.110 3.890 22 Cl -0.005 7.005 23 C -0.277 4.277 24 S 0.297 5.703 25 C 0.123 3.877 26 H 0.255 0.745 27 H 0.029 0.971 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.415 0.585 34 H 0.195 0.805 35 H 0.031 0.969 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 -22.355 -9.491 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.003 3.997 14 H 0.079 0.921 15 C 0.005 3.995 16 N -0.339 5.339 17 C 0.375 3.625 18 O -0.404 6.404 19 C -0.274 4.274 20 N -0.139 5.139 21 C -0.055 4.055 22 Cl 0.023 6.977 23 C -0.419 4.419 24 S 0.552 5.448 25 C -0.005 4.005 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.251 0.749 34 H 0.212 0.788 35 H 0.049 0.951 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.590 -22.755 -8.093 25.034 hybrid contribution 0.434 1.524 -1.796 2.395 sum 7.024 -21.231 -9.889 24.452 Atomic orbital electron populations 1.70044 1.05286 1.25596 1.53710 1.25051 0.95354 0.98518 1.00733 0.86181 0.79321 0.83665 0.77350 1.20187 1.21479 1.21613 1.19235 0.92665 0.84435 1.42116 0.91263 1.44075 1.33606 1.00981 1.53113 1.21452 0.89110 0.98350 0.89732 1.23329 0.99117 0.84748 0.96588 1.87792 1.41137 1.32668 1.69261 1.22823 0.87827 0.93476 0.95527 0.92128 1.21607 1.02170 0.87868 0.87835 1.45760 1.68143 1.07794 1.12161 1.16599 0.78168 0.81977 0.85709 1.90885 1.52704 1.75560 1.21292 1.27651 1.08442 0.97619 0.93733 1.66270 1.13821 1.33886 0.99879 1.20407 1.06573 0.88986 0.89547 1.98418 1.97082 1.96755 1.05434 1.26670 1.10955 1.02979 1.01339 1.84166 1.57418 1.05287 0.97931 1.21434 0.99034 0.87209 0.92802 0.93522 0.95329 0.88738 0.89984 0.94025 0.89955 0.89403 0.74851 0.78809 0.95117 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 3 Si 0.91 21.26 29.59 -169.99 -5.03 16.23 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.26 -6.85 9.65 -15.06 -0.15 -6.99 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 9 N -0.59 -14.64 3.05 -171.83 -0.52 -15.16 16 10 C 0.14 3.28 5.45 -3.54 -0.02 3.26 16 11 C 0.04 0.76 6.98 37.31 0.26 1.02 16 12 O -0.39 -7.24 10.33 -35.23 -0.36 -7.61 16 13 C 0.06 1.08 2.81 -26.57 -0.07 1.01 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 15 C 0.13 1.85 5.34 -4.04 -0.02 1.83 16 16 N -0.69 -9.31 5.50 -61.45 -0.34 -9.65 16 17 C 0.59 8.06 7.81 -12.61 -0.10 7.96 16 18 O -0.53 -8.21 16.94 5.25 0.09 -8.13 16 19 C 0.00 0.02 7.46 -14.43 -0.11 -0.09 16 20 N -0.42 -4.96 10.24 -8.62 -0.09 -5.05 16 21 C 0.11 1.09 7.22 -19.40 -0.14 0.95 16 22 Cl 0.00 -0.05 29.20 -51.86 -1.51 -1.56 16 23 C -0.28 -2.01 10.93 29.35 0.32 -1.68 16 24 S 0.30 2.36 23.03 -107.50 -2.48 -0.11 16 25 C 0.12 2.48 6.02 -3.53 -0.02 2.46 16 26 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.44 6.14 -51.93 -0.32 2.13 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.42 5.47 8.13 -40.82 -0.33 5.14 16 34 H 0.19 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -30.96 338.43 -8.65 -39.61 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -3.99 Total: 1.75 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -0.13 Total: 9.70 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.33 Total: -54.98 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.28 Total: -15.73 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.48 Total: -0.11 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.51 Total: -1.56 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.96 -8.65 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035484522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.942 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds