Wall clock time and date at job start Tue Mar 31 2020 16:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99899 * 2 1 4 4 H 1.48500 * 109.46934 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47324 * 300.00513 * 3 2 1 6 6 H 1.48508 * 109.47075 * 60.00517 * 3 2 1 7 7 C 1.38806 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99951 * 196.91583 * 7 2 1 9 9 N 1.36942 * 120.00378 * 16.91132 * 7 2 1 10 10 C 1.47144 * 120.97953 * 26.25787 * 9 7 2 11 11 C 1.53300 * 108.38460 * 129.44340 * 10 9 7 12 12 O 1.42956 * 109.26218 * 52.27823 * 11 10 9 13 13 C 1.42962 * 114.17085 * 297.50067 * 12 11 10 14 14 H 1.08996 * 109.51746 * 302.55172 * 13 12 11 15 15 C 1.52999 * 109.51343 * 182.44598 * 13 12 11 16 16 N 1.46499 * 109.47013 * 65.10220 * 15 13 12 17 17 C 1.34779 * 120.00381 * 179.97438 * 16 15 13 18 18 O 1.21627 * 119.99439 * 359.73009 * 17 16 15 19 19 C 1.47221 * 120.00228 * 179.72226 * 17 16 15 20 20 N 1.30595 * 125.53467 * 359.70596 * 19 17 16 21 21 C 1.30737 * 115.89992 * 179.77223 * 20 19 17 22 22 Cl 1.73600 * 122.12450 * 180.23634 * 21 20 19 23 23 C 1.34335 * 115.75427 * 0.51821 * 21 20 19 24 24 S 1.71068 * 109.09354 * 359.72131 * 23 21 20 25 25 C 1.47148 * 120.98202 * 206.24194 * 9 7 2 26 26 H 0.97001 * 120.00235 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.68736 * 249.16479 * 10 9 7 28 28 H 1.09002 * 109.68357 * 9.68469 * 10 9 7 29 29 H 1.08997 * 109.51296 * 172.22982 * 11 10 9 30 30 H 1.08996 * 109.51112 * 292.33121 * 11 10 9 31 31 H 1.08995 * 109.47182 * 305.10340 * 15 13 12 32 32 H 1.09002 * 109.47048 * 185.10498 * 15 13 12 33 33 H 0.96999 * 120.00019 * 359.72578 * 16 15 13 34 34 H 1.08005 * 125.45395 * 179.69521 * 23 21 20 35 35 H 1.08997 * 109.68660 * 110.83258 * 25 9 7 36 36 H 1.08998 * 109.68243 * 350.27123 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0552 -1.2225 0.2716 9 7 1.3700 -2.3623 -0.3460 10 6 0.1978 -2.3446 -1.2354 11 6 0.4257 -3.3657 -2.3559 12 8 0.7669 -4.6291 -1.7805 13 6 1.9823 -4.6203 -1.0277 14 1 2.8021 -4.2866 -1.6637 15 6 2.2755 -6.0314 -0.5142 16 7 2.5324 -6.9207 -1.6497 17 6 2.8160 -8.2210 -1.4367 18 8 2.8635 -8.6549 -0.3015 19 6 3.0681 -9.1160 -2.5781 20 7 3.0396 -8.7678 -3.8365 21 6 3.2975 -9.7170 -4.6977 22 17 3.3090 -9.4317 -6.4100 23 6 3.5472 -10.9284 -4.1737 24 16 3.4498 -10.8315 -2.4685 25 6 1.8341 -3.6634 0.1609 26 1 -0.4850 0.8400 0.0004 27 1 -0.6954 -2.6123 -0.6710 28 1 0.0770 -1.3496 -1.6637 29 1 -0.4852 -3.4683 -2.9456 30 1 1.2387 -3.0265 -2.9977 31 1 1.4173 -6.3990 0.0483 32 1 3.1515 -6.0074 0.1340 33 1 2.4948 -6.5745 -2.5550 34 1 3.7729 -11.8209 -4.7385 35 1 1.1056 -4.0638 0.8659 36 1 2.7972 -3.5420 0.6565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035484522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:56 Heat of formation + Delta-G solvation = -32.189406 kcal Electronic energy + Delta-G solvation = -23103.534684 eV Core-core repulsion = 19354.794997 eV Total energy + Delta-G solvation = -3748.739687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.43971 -40.50067 -39.86633 -37.61296 -36.55642 -35.86626 -33.41564 -32.62704 -31.52429 -29.32207 -28.05860 -26.64619 -24.98140 -23.70714 -22.89788 -21.66882 -20.90042 -19.89009 -18.88856 -18.40474 -17.58539 -17.20471 -16.96022 -16.72509 -16.66718 -16.14944 -15.64844 -15.51318 -15.42462 -15.06539 -14.77237 -14.57882 -14.38522 -13.76991 -13.23877 -13.19781 -13.02566 -12.76127 -12.72245 -12.51344 -12.18351 -12.15145 -12.06682 -11.88547 -11.80598 -11.35434 -11.11452 -10.95472 -10.81089 -10.55566 -10.31908 -9.88090 -8.76147 -7.91576 -5.38841 -1.03331 -0.14465 0.10902 0.93877 1.10913 1.46093 1.48162 1.58686 1.90968 1.99284 2.47671 2.75606 3.03516 3.23852 3.47791 3.74119 3.93577 3.99846 4.06451 4.23740 4.38720 4.46512 4.51458 4.59705 4.71746 4.74686 4.88726 5.04752 5.18390 5.23979 5.55188 5.61118 5.97148 6.24559 6.30308 6.33180 6.87169 7.05760 7.73951 8.27392 9.14752 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.020805 B = 0.002444 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.498386 B =11454.695924 C =12180.824154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.614 5.614 10 C 0.144 3.856 11 C 0.054 3.946 12 O -0.391 6.391 13 C 0.076 3.924 14 H 0.067 0.933 15 C 0.139 3.861 16 N -0.689 5.689 17 C 0.598 3.402 18 O -0.554 6.554 19 C -0.043 4.043 20 N -0.436 5.436 21 C 0.082 3.918 22 Cl -0.006 7.006 23 C -0.250 4.250 24 S 0.360 5.640 25 C 0.118 3.882 26 H 0.251 0.749 27 H 0.000 1.000 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.417 0.583 34 H 0.230 0.770 35 H 0.022 0.978 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.317 -24.441 -10.524 27.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.338 5.338 10 C 0.018 3.982 11 C -0.024 4.024 12 O -0.310 6.310 13 C 0.016 3.984 14 H 0.085 0.915 15 C 0.015 3.985 16 N -0.339 5.339 17 C 0.381 3.619 18 O -0.433 6.433 19 C -0.316 4.316 20 N -0.156 5.156 21 C -0.083 4.083 22 Cl 0.022 6.978 23 C -0.392 4.392 24 S 0.614 5.386 25 C -0.008 4.008 26 H 0.060 0.940 27 H 0.018 0.982 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.254 0.746 34 H 0.247 0.753 35 H 0.040 0.960 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.142 -24.863 -9.132 27.710 hybrid contribution -0.019 2.009 -1.465 2.486 sum 8.123 -22.854 -10.597 26.469 Atomic orbital electron populations 1.70196 1.06739 1.25994 1.55257 1.25829 0.96101 1.01643 1.01067 0.85155 0.78645 0.79529 0.76782 1.18890 1.21553 1.22003 1.19587 0.93052 0.85511 1.41269 0.90844 1.44356 1.33665 1.01999 1.53801 1.21295 0.88029 0.98273 0.90554 1.23152 1.00624 0.83662 0.94949 1.87806 1.41900 1.32029 1.69271 1.22695 0.87404 0.94318 0.93956 0.91501 1.21405 1.02505 0.86424 0.88119 1.45672 1.68383 1.08041 1.11815 1.16786 0.77195 0.81864 0.86080 1.90860 1.53967 1.76005 1.22476 1.27217 1.11812 0.99530 0.93073 1.66176 1.13803 1.35338 1.00284 1.20561 1.08494 0.89701 0.89557 1.98414 1.97215 1.96842 1.05290 1.27166 1.07364 1.03215 1.01490 1.84001 1.55081 1.01844 0.97678 1.21596 0.99068 0.86060 0.94103 0.93952 0.98163 0.91457 0.87507 0.93281 0.90693 0.88012 0.74620 0.75296 0.95970 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.86 11.14 21.65 0.24 -54.62 16 2 C -0.05 -2.81 4.95 84.86 0.42 -2.39 16 3 Si 0.97 44.11 29.59 68.60 2.03 46.14 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.26 -14.29 9.65 84.03 0.81 -13.47 16 8 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 9 N -0.61 -30.62 3.05 -697.54 -2.13 -32.74 16 10 C 0.14 6.95 5.45 86.36 0.47 7.42 16 11 C 0.05 2.03 6.98 72.08 0.50 2.53 16 12 O -0.39 -14.20 10.33 -148.98 -1.54 -15.74 16 13 C 0.08 2.52 2.81 30.70 0.09 2.61 16 14 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 15 C 0.14 3.89 5.34 86.38 0.46 4.36 16 16 N -0.69 -18.05 5.50 -466.57 -2.57 -20.62 16 17 C 0.60 15.70 7.81 86.60 0.68 16.38 16 18 O -0.55 -16.82 16.94 -4.12 -0.07 -16.89 16 19 C -0.04 -0.92 7.46 87.24 0.65 -0.27 16 20 N -0.44 -9.72 10.24 -181.17 -1.86 -11.58 16 21 C 0.08 1.45 7.22 83.96 0.61 2.06 16 22 Cl -0.01 -0.09 29.20 -2.72 -0.08 -0.17 16 23 C -0.25 -2.77 10.93 66.93 0.73 -2.04 16 24 S 0.36 4.71 23.03 -56.49 -1.30 3.41 16 25 C 0.12 4.77 6.02 86.36 0.52 5.29 16 26 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.07 3.60 6.14 -2.39 -0.01 3.59 16 29 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.42 10.64 8.13 -92.71 -0.75 9.88 16 34 H 0.23 0.77 8.06 -2.91 -0.02 0.74 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 2.86 7.96 -2.39 -0.02 2.84 16 Total: -1.00 -67.72 338.43 -0.95 -68.67 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.38 Total: 11.68 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 5.94 Total: 22.46 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -6.31 Total: -119.56 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.61 Total: -32.63 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.30 Total: 3.41 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal Total: -67.72 -0.95 -68.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035484522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.481 kcal (2) G-P(sol) polarization free energy of solvation -67.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds