Wall clock time and date at job start Tue Mar 31 2020 16:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00116 * 2 1 4 4 H 1.48498 * 109.47591 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47318 * 300.00007 * 3 2 1 6 6 H 1.48500 * 109.47103 * 59.99507 * 3 2 1 7 7 C 1.38813 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00124 * 196.92612 * 7 2 1 9 9 N 1.36938 * 120.00077 * 16.91776 * 7 2 1 10 10 C 1.47155 * 120.98508 * 206.24445 * 9 7 2 11 11 C 1.53289 * 108.38522 * 230.51674 * 10 9 7 12 12 O 1.42956 * 109.26369 * 307.71971 * 11 10 9 13 13 C 1.42962 * 114.17158 * 62.50159 * 12 11 10 14 14 H 1.09003 * 109.51382 * 57.45123 * 13 12 11 15 15 C 1.52997 * 109.51653 * 177.55356 * 13 12 11 16 16 N 1.46503 * 109.47112 * 299.89591 * 15 13 12 17 17 C 1.34772 * 120.00096 * 179.97438 * 16 15 13 18 18 O 1.21616 * 120.00540 * 0.02562 * 17 16 15 19 19 C 1.47232 * 119.99650 * 180.27582 * 17 16 15 20 20 N 1.30608 * 125.53058 * 179.72401 * 19 17 16 21 21 C 1.30729 * 115.89840 * 179.97438 * 20 19 17 22 22 Cl 1.73604 * 122.12292 * 179.97438 * 21 20 19 23 23 C 1.34342 * 115.75963 * 359.97438 * 21 20 19 24 24 S 1.71071 * 109.09108 * 359.76957 * 23 21 20 25 25 C 1.47151 * 120.97772 * 26.22443 * 9 7 2 26 26 H 0.96999 * 120.00000 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.67921 * 350.23996 * 10 9 7 28 28 H 1.09001 * 109.67745 * 110.75370 * 10 9 7 29 29 H 1.08998 * 109.51553 * 67.62228 * 11 10 9 30 30 H 1.09002 * 109.51244 * 187.78035 * 11 10 9 31 31 H 1.09005 * 109.47356 * 179.90163 * 15 13 12 32 32 H 1.08998 * 109.47215 * 59.89642 * 15 13 12 33 33 H 0.97007 * 119.99754 * 0.02562 * 16 15 13 34 34 H 1.07999 * 125.45764 * 179.97438 * 23 21 20 35 35 H 1.08997 * 109.68471 * 9.75962 * 25 9 7 36 36 H 1.08997 * 109.71123 * 249.22541 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2223 0.2728 9 7 1.3701 -2.3626 -0.3440 10 6 1.8341 -3.6634 0.1640 11 6 1.9814 -4.6215 -1.0235 12 8 0.7658 -4.6308 -1.7756 13 6 0.4246 -3.3680 -2.3524 14 1 1.2374 -3.0297 -2.9951 15 6 -0.8545 -3.5127 -3.1794 16 7 -0.6373 -4.4917 -4.2474 17 6 -1.6336 -4.7837 -5.1068 18 8 -2.7129 -4.2342 -4.9960 19 6 -1.4172 -5.7720 -6.1763 20 7 -2.3047 -6.1393 -7.0614 21 6 -1.9094 -7.0334 -7.9293 22 17 -2.9570 -7.6366 -9.1754 23 6 -0.6412 -7.4559 -7.7959 24 16 0.0828 -6.6448 -6.4751 25 6 0.1975 -2.3455 -1.2330 26 1 -0.4850 0.8400 -0.0004 27 1 2.7974 -3.5416 0.6592 28 1 1.1061 -4.0624 0.8703 29 1 2.8005 -4.2883 -1.6607 30 1 2.1901 -5.6265 -0.6566 31 1 -1.1149 -2.5490 -3.6174 32 1 -1.6668 -3.8509 -2.5361 33 1 0.2235 -4.9303 -4.3357 34 1 -0.1552 -8.1877 -8.4241 35 1 0.0771 -1.3511 -1.6628 36 1 -0.6958 -2.6119 -0.6682 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035484523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:59 Heat of formation + Delta-G solvation = -6.872229 kcal Electronic energy + Delta-G solvation = -23186.884346 eV Core-core repulsion = 19439.242494 eV Total energy + Delta-G solvation = -3747.641852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55125 -39.39946 -38.44245 -36.91827 -35.02011 -34.42533 -31.65954 -31.27096 -30.64612 -27.84343 -26.88481 -25.26501 -23.38063 -22.45891 -21.51979 -20.31088 -19.78639 -19.20707 -17.46355 -16.98642 -16.23313 -16.18328 -15.87605 -15.66063 -15.19281 -14.57701 -14.48435 -14.32599 -14.03045 -13.87730 -13.33894 -13.09561 -12.89799 -12.58708 -12.42871 -12.00766 -11.64293 -11.50132 -11.17322 -10.92004 -10.84665 -10.74640 -10.47779 -10.30262 -10.27492 -10.12410 -10.00305 -9.73876 -9.31855 -9.18900 -9.07764 -8.61622 -6.83058 -5.90847 -3.34702 -0.29271 0.54296 0.74468 1.74645 1.79127 2.71216 2.93042 3.30305 3.38506 3.40282 4.07706 4.24683 4.38312 4.43060 4.60100 4.99933 5.07263 5.29132 5.43747 5.49307 5.76514 5.83842 5.89239 6.01071 6.05923 6.23338 6.34971 6.46619 6.71341 6.81628 6.98669 7.30264 7.39728 7.65160 7.73286 7.92965 8.26410 9.04293 9.67169 10.23661 11.17364 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.002461 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.425703 B =11376.855698 C =11915.194817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.257 4.257 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.108 3.892 11 C 0.050 3.950 12 O -0.391 6.391 13 C 0.053 3.947 14 H 0.059 0.941 15 C 0.133 3.867 16 N -0.706 5.706 17 C 0.589 3.411 18 O -0.494 6.494 19 C 0.017 3.983 20 N -0.397 5.397 21 C 0.108 3.892 22 Cl -0.004 7.004 23 C -0.260 4.260 24 S 0.235 5.765 25 C 0.152 3.848 26 H 0.256 0.744 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.401 0.599 34 H 0.195 0.805 35 H 0.098 0.902 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 -16.108 -14.963 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.311 6.311 13 C -0.006 4.006 14 H 0.077 0.923 15 C 0.011 3.989 16 N -0.358 5.358 17 C 0.370 3.630 18 O -0.367 6.367 19 C -0.260 4.260 20 N -0.114 5.114 21 C -0.057 4.057 22 Cl 0.025 6.975 23 C -0.402 4.402 24 S 0.489 5.511 25 C 0.026 3.974 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.236 0.764 34 H 0.213 0.787 35 H 0.116 0.884 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.927 -15.491 -14.454 21.274 hybrid contribution 0.282 0.323 -0.897 0.994 sum 2.209 -15.168 -15.351 21.694 Atomic orbital electron populations 1.70017 1.05250 1.25771 1.53440 1.25067 0.95365 0.98552 1.00599 0.86196 0.79277 0.83686 0.77437 1.20230 1.21390 1.21587 1.19218 0.92679 0.84400 1.42342 0.91263 1.44050 1.33730 1.01428 1.52573 1.21608 0.98707 0.87524 0.93966 1.23019 0.86038 0.99715 0.94004 1.87769 1.42415 1.31396 1.69473 1.23185 0.94786 0.86703 0.95944 0.92333 1.21607 0.98416 0.91984 0.86931 1.45765 1.14670 1.44433 1.30968 1.16586 0.85038 0.81099 0.80324 1.90894 1.24237 1.50385 1.71230 1.27467 0.92735 1.04390 1.01396 1.66071 1.32700 1.10502 1.02098 1.20468 0.90466 0.98529 0.96221 1.98412 1.66453 1.85043 1.47642 1.26503 0.98217 1.09246 1.06283 1.84072 1.14885 1.30993 1.21144 1.21308 0.89623 0.97549 0.88957 0.93370 0.91916 0.95477 0.93765 0.89897 0.89139 0.89886 0.76422 0.78736 0.88443 0.94876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.12 11.14 55.49 0.62 -24.50 16 2 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 3 Si 0.90 20.83 29.59 -169.99 -5.03 15.80 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.26 -6.71 9.65 -15.06 -0.15 -6.86 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.12 3.05 -171.83 -0.52 -14.64 16 10 C 0.11 2.12 6.74 -3.53 -0.02 2.10 16 11 C 0.05 0.80 6.98 37.31 0.26 1.06 16 12 O -0.39 -6.61 10.14 -35.23 -0.36 -6.97 16 13 C 0.05 0.92 2.86 -26.58 -0.08 0.85 16 14 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.13 2.07 5.37 -4.04 -0.02 2.05 16 16 N -0.71 -9.34 5.45 -61.45 -0.33 -9.67 16 17 C 0.59 8.71 7.81 -12.61 -0.10 8.61 16 18 O -0.49 -9.26 17.07 5.26 0.09 -9.17 16 19 C 0.02 0.22 7.46 -14.42 -0.11 0.11 16 20 N -0.40 -5.48 10.60 -8.61 -0.09 -5.57 16 21 C 0.11 1.17 7.22 -19.40 -0.14 1.03 16 22 Cl 0.00 -0.03 29.20 -51.86 -1.51 -1.55 16 23 C -0.26 -2.01 10.93 29.36 0.32 -1.69 16 24 S 0.24 1.83 22.30 -107.50 -2.40 -0.57 16 25 C 0.15 3.39 4.73 -3.53 -0.02 3.37 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.40 4.38 7.49 -40.82 -0.31 4.08 16 34 H 0.20 0.86 8.06 -52.49 -0.42 0.43 16 35 H 0.10 2.40 6.14 -51.93 -0.32 2.08 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -31.78 337.39 -8.56 -40.34 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -3.97 Total: 0.78 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -0.13 Total: 10.64 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.33 Total: -54.39 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.27 Total: -16.14 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.40 Total: -0.57 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.51 Total: -1.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.78 -8.56 -40.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035484523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.466 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds