Wall clock time and date at job start Tue Mar 31 2020 16:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00116 * 2 1 4 4 H 1.48498 * 109.47591 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47318 * 300.00007 * 3 2 1 6 6 H 1.48500 * 109.47103 * 59.99507 * 3 2 1 7 7 C 1.38813 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00124 * 196.92612 * 7 2 1 9 9 N 1.36938 * 120.00077 * 16.91776 * 7 2 1 10 10 C 1.47155 * 120.98508 * 206.24445 * 9 7 2 11 11 C 1.53289 * 108.38522 * 230.51674 * 10 9 7 12 12 O 1.42956 * 109.26369 * 307.71971 * 11 10 9 13 13 C 1.42962 * 114.17158 * 62.50159 * 12 11 10 14 14 H 1.09003 * 109.51382 * 57.45123 * 13 12 11 15 15 C 1.52997 * 109.51653 * 177.55356 * 13 12 11 16 16 N 1.46503 * 109.47112 * 299.89591 * 15 13 12 17 17 C 1.34772 * 120.00096 * 179.97438 * 16 15 13 18 18 O 1.21616 * 120.00540 * 0.02562 * 17 16 15 19 19 C 1.47232 * 119.99650 * 180.27582 * 17 16 15 20 20 N 1.30608 * 125.53058 * 179.72401 * 19 17 16 21 21 C 1.30729 * 115.89840 * 179.97438 * 20 19 17 22 22 Cl 1.73604 * 122.12292 * 179.97438 * 21 20 19 23 23 C 1.34342 * 115.75963 * 359.97438 * 21 20 19 24 24 S 1.71071 * 109.09108 * 359.76957 * 23 21 20 25 25 C 1.47151 * 120.97772 * 26.22443 * 9 7 2 26 26 H 0.96999 * 120.00000 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.67921 * 350.23996 * 10 9 7 28 28 H 1.09001 * 109.67745 * 110.75370 * 10 9 7 29 29 H 1.08998 * 109.51553 * 67.62228 * 11 10 9 30 30 H 1.09002 * 109.51244 * 187.78035 * 11 10 9 31 31 H 1.09005 * 109.47356 * 179.90163 * 15 13 12 32 32 H 1.08998 * 109.47215 * 59.89642 * 15 13 12 33 33 H 0.97007 * 119.99754 * 0.02562 * 16 15 13 34 34 H 1.07999 * 125.45764 * 179.97438 * 23 21 20 35 35 H 1.08997 * 109.68471 * 9.75962 * 25 9 7 36 36 H 1.08997 * 109.71123 * 249.22541 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2223 0.2728 9 7 1.3701 -2.3626 -0.3440 10 6 1.8341 -3.6634 0.1640 11 6 1.9814 -4.6215 -1.0235 12 8 0.7658 -4.6308 -1.7756 13 6 0.4246 -3.3680 -2.3524 14 1 1.2374 -3.0297 -2.9951 15 6 -0.8545 -3.5127 -3.1794 16 7 -0.6373 -4.4917 -4.2474 17 6 -1.6336 -4.7837 -5.1068 18 8 -2.7129 -4.2342 -4.9960 19 6 -1.4172 -5.7720 -6.1763 20 7 -2.3047 -6.1393 -7.0614 21 6 -1.9094 -7.0334 -7.9293 22 17 -2.9570 -7.6366 -9.1754 23 6 -0.6412 -7.4559 -7.7959 24 16 0.0828 -6.6448 -6.4751 25 6 0.1975 -2.3455 -1.2330 26 1 -0.4850 0.8400 -0.0004 27 1 2.7974 -3.5416 0.6592 28 1 1.1061 -4.0624 0.8703 29 1 2.8005 -4.2883 -1.6607 30 1 2.1901 -5.6265 -0.6566 31 1 -1.1149 -2.5490 -3.6174 32 1 -1.6668 -3.8509 -2.5361 33 1 0.2235 -4.9303 -4.3357 34 1 -0.1552 -8.1877 -8.4241 35 1 0.0771 -1.3511 -1.6628 36 1 -0.6958 -2.6119 -0.6682 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035484523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:58 Heat of formation + Delta-G solvation = -30.866669 kcal Electronic energy + Delta-G solvation = -23187.924823 eV Core-core repulsion = 19439.242494 eV Total energy + Delta-G solvation = -3748.682329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49274 -40.53538 -39.81978 -37.64443 -36.50884 -35.95746 -33.25899 -32.80481 -31.59522 -29.24096 -28.24323 -26.61369 -25.04338 -23.69801 -22.75451 -21.60327 -20.95410 -20.14937 -18.91804 -18.29413 -17.54974 -17.29184 -16.92552 -16.82039 -16.68137 -16.07500 -15.69933 -15.52837 -15.47235 -15.03551 -14.70829 -14.58850 -14.54999 -13.82268 -13.28730 -13.17631 -13.00640 -12.80451 -12.69315 -12.49129 -12.22010 -12.16557 -12.05286 -11.89802 -11.79590 -11.27454 -10.99466 -10.97307 -10.78704 -10.53809 -10.41418 -9.91773 -8.73670 -7.89981 -5.36987 -1.06665 -0.14572 -0.01661 0.93112 1.02204 1.46868 1.49641 1.59477 1.66130 1.90014 2.48770 2.78077 3.22871 3.32435 3.50832 3.65357 3.93132 4.03902 4.07891 4.28596 4.33194 4.47820 4.54019 4.60757 4.69253 4.81621 4.98241 5.10429 5.11860 5.26568 5.56176 5.62811 5.97971 6.27808 6.33084 6.34373 6.85561 7.07471 7.76605 8.29536 9.15886 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.002461 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.425703 B =11376.855698 C =11915.194817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.296 1.296 7 C -0.262 4.262 8 H 0.075 0.925 9 N -0.614 5.614 10 C 0.100 3.900 11 C 0.057 3.943 12 O -0.389 6.389 13 C 0.075 3.925 14 H 0.072 0.928 15 C 0.143 3.857 16 N -0.692 5.692 17 C 0.593 3.407 18 O -0.548 6.548 19 C -0.036 4.036 20 N -0.434 5.434 21 C 0.078 3.922 22 Cl -0.004 7.004 23 C -0.236 4.236 24 S 0.340 5.660 25 C 0.158 3.842 26 H 0.251 0.749 27 H 0.072 0.928 28 H 0.014 0.986 29 H 0.058 0.942 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.415 0.585 34 H 0.235 0.765 35 H 0.068 0.932 36 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -18.364 -16.394 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.223 1.223 7 C -0.392 4.392 8 H 0.093 0.907 9 N -0.339 5.339 10 C -0.025 4.025 11 C -0.020 4.020 12 O -0.308 6.308 13 C 0.016 3.984 14 H 0.090 0.910 15 C 0.019 3.981 16 N -0.345 5.345 17 C 0.375 3.625 18 O -0.425 6.425 19 C -0.310 4.310 20 N -0.153 5.153 21 C -0.086 4.086 22 Cl 0.023 6.977 23 C -0.379 4.379 24 S 0.594 5.406 25 C 0.031 3.969 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.252 0.748 34 H 0.251 0.749 35 H 0.087 0.913 36 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 5.067 -17.789 -15.877 24.376 hybrid contribution -0.559 0.878 -0.431 1.126 sum 4.508 -16.911 -16.308 23.922 Atomic orbital electron populations 1.70178 1.06710 1.25981 1.55273 1.25819 0.96043 1.01611 1.01175 0.85203 0.78763 0.79755 0.76689 1.18713 1.21645 1.22295 1.19573 0.93049 0.85458 1.41105 0.90745 1.44359 1.33717 1.02438 1.53347 1.21851 0.98533 0.86482 0.95668 1.23098 0.85812 1.00728 0.92362 1.87789 1.43231 1.30423 1.69398 1.22774 0.95755 0.85635 0.94255 0.90973 1.21297 0.97078 0.92475 0.87258 1.45469 1.15157 1.43817 1.30012 1.16898 0.84205 0.80866 0.80527 1.90852 1.26247 1.52598 1.72817 1.26825 0.95912 1.06397 1.01856 1.65959 1.34754 1.11607 1.02974 1.20598 0.91810 0.99467 0.96769 1.98405 1.66814 1.84945 1.47486 1.27108 0.96981 1.08050 1.05724 1.83677 1.10258 1.27592 1.19096 1.21095 0.88334 0.97596 0.89893 0.93991 0.90963 0.96776 0.92331 0.85926 0.89598 0.91376 0.74764 0.74869 0.91347 0.98093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.06 11.14 21.65 0.24 -53.82 16 2 C -0.05 -2.75 4.95 84.86 0.42 -2.33 16 3 Si 0.97 43.27 29.59 68.60 2.03 45.30 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 7 C -0.26 -13.69 9.65 84.03 0.81 -12.88 16 8 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 9 N -0.61 -29.27 3.05 -697.54 -2.13 -31.40 16 10 C 0.10 3.79 6.74 86.35 0.58 4.37 16 11 C 0.06 1.63 6.98 72.08 0.50 2.14 16 12 O -0.39 -12.25 10.14 -148.98 -1.51 -13.76 16 13 C 0.08 2.56 2.86 30.69 0.09 2.65 16 14 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 15 C 0.14 4.50 5.37 86.38 0.46 4.96 16 16 N -0.69 -17.73 5.45 -466.57 -2.54 -20.27 16 17 C 0.59 17.66 7.81 86.61 0.68 18.34 16 18 O -0.55 -21.60 17.07 -4.08 -0.07 -21.67 16 19 C -0.04 -0.86 7.46 87.24 0.65 -0.21 16 20 N -0.43 -11.84 10.60 -181.15 -1.92 -13.76 16 21 C 0.08 1.57 7.22 83.97 0.61 2.17 16 22 Cl 0.00 -0.08 29.20 -2.72 -0.08 -0.16 16 23 C -0.24 -2.73 10.93 66.93 0.73 -2.00 16 24 S 0.34 3.97 22.30 -56.49 -1.26 2.71 16 25 C 0.16 7.22 4.73 86.36 0.41 7.63 16 26 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.07 2.56 7.96 -2.39 -0.02 2.54 16 28 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.42 8.02 7.49 -92.70 -0.69 7.33 16 34 H 0.23 0.74 8.06 -2.91 -0.02 0.71 16 35 H 0.07 3.52 6.14 -2.39 -0.01 3.51 16 36 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 Total: -1.00 -73.16 337.39 -0.86 -74.01 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.44 Total: 7.95 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 5.94 Total: 24.85 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -6.35 Total: -119.24 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.58 Total: -35.43 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.26 Total: 2.71 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.08 Total: -0.16 kcal Total: -73.16 -0.86 -74.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035484523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.147 kcal (2) G-P(sol) polarization free energy of solvation -73.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds