Wall clock time and date at job start Tue Mar 31 2020 17:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35671 * 125.69229 * 2 1 4 4 Cl 1.73601 * 125.58419 * 0.02562 * 3 2 1 5 5 C 1.35716 * 108.82548 * 180.02562 * 3 2 1 6 6 Cl 1.73610 * 126.05956 * 179.97438 * 5 3 2 7 7 C 1.39788 * 107.88020 * 359.76243 * 5 3 2 8 8 C 1.37809 * 125.69655 * 180.02562 * 2 1 3 9 9 C 1.46539 * 126.22224 * 359.95699 * 8 2 1 10 10 O 1.21716 * 120.00178 * 4.10797 * 9 8 2 11 11 N 1.34773 * 119.99861 * 184.10465 * 9 8 2 12 12 C 1.46506 * 119.99632 * 174.83839 * 11 9 8 13 13 C 1.53004 * 109.46991 * 180.02562 * 12 11 9 14 14 H 1.09001 * 112.73643 * 56.23654 * 13 12 11 15 15 C 1.53492 * 113.46858 * 187.05979 * 13 12 11 16 16 C 1.53498 * 83.34496 * 140.84842 * 15 13 12 17 17 N 1.47068 * 113.46780 * 285.50148 * 13 12 11 18 18 C 1.36940 * 136.06143 * 37.83134 * 17 13 12 19 19 H 1.07998 * 119.99669 * 0.02562 * 18 17 13 20 20 C 1.38808 * 120.00146 * 180.02562 * 18 17 13 21 21 N 1.31617 * 120.00018 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99982 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46557 * 90.00424 * 22 20 18 24 24 H 1.48495 * 109.47345 * 210.00213 * 22 20 18 25 25 H 1.48498 * 109.47141 * 330.00464 * 22 20 18 26 26 H 1.08994 * 109.46877 * 265.07862 * 1 2 3 27 27 H 1.08999 * 109.47217 * 25.08030 * 1 2 3 28 28 H 1.08998 * 109.47213 * 145.07875 * 1 2 3 29 29 H 1.08002 * 126.43319 * 180.24050 * 7 5 3 30 30 H 0.96991 * 120.00283 * 354.84240 * 11 9 8 31 31 H 1.09001 * 109.46899 * 60.00578 * 12 11 9 32 32 H 1.08993 * 109.47460 * 299.99582 * 12 11 9 33 33 H 1.08995 * 114.20509 * 254.43303 * 15 13 12 34 34 H 1.09000 * 114.20604 * 27.06773 * 15 13 12 35 35 H 1.08997 * 113.47386 * 219.15697 * 16 15 13 36 36 H 1.08998 * 113.46930 * 88.70765 * 16 15 13 37 37 H 0.97000 * 120.00299 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2566 1.1019 0.0000 4 17 1.6993 2.7460 0.0006 5 6 3.5554 0.7081 -0.0006 6 17 4.9405 1.7547 -0.0014 7 6 3.5801 -0.6896 0.0046 8 6 2.2692 -1.1192 -0.0005 9 6 1.8144 -2.5122 -0.0002 10 8 0.6260 -2.7644 -0.0750 11 7 2.7120 -3.5141 0.0828 12 6 2.2533 -4.9008 0.1971 13 6 3.4637 -5.8335 0.2751 14 1 4.1381 -5.5809 1.0933 15 6 3.0927 -7.3220 0.2242 16 6 4.3526 -7.4228 -0.6469 17 7 4.1486 -6.0133 -1.0139 18 6 4.4557 -5.2194 -2.0866 19 1 4.1671 -4.1787 -2.0883 20 6 5.1378 -5.7523 -3.1717 21 7 5.4891 -7.0207 -3.1699 22 14 5.5561 -4.6694 -4.6353 23 1 6.8858 -4.0431 -4.4235 24 1 5.5887 -5.4954 -5.8689 25 1 4.5262 -3.6089 -4.7767 26 1 -0.3633 -0.0882 1.0238 27 1 -0.3633 0.9308 -0.4356 28 1 -0.3633 -0.8426 -0.5883 29 1 4.4602 -1.3155 0.0092 30 1 3.6615 -3.3171 0.0669 31 1 1.6520 -5.1576 -0.6750 32 1 1.6514 -5.0113 1.0989 33 1 3.1701 -7.8349 1.1829 34 1 2.1626 -7.5330 -0.3035 35 1 4.2461 -8.1097 -1.4864 36 1 5.2638 -7.5946 -0.0740 37 1 5.9654 -7.3932 -3.9283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038329921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:35 Heat of formation + Delta-G solvation = 42.381472 kcal Electronic energy + Delta-G solvation = -23613.698521 eV Core-core repulsion = 19866.148763 eV Total energy + Delta-G solvation = -3747.549758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.73493 -40.54691 -39.54473 -37.92880 -37.55437 -35.73581 -34.25517 -33.89182 -31.04465 -29.88517 -28.66195 -27.68006 -25.35470 -24.44997 -23.12057 -21.93316 -21.26346 -20.72223 -19.38123 -18.44473 -17.40209 -17.22406 -17.11526 -16.93354 -16.10883 -15.71760 -15.61856 -15.37810 -15.12317 -14.77880 -14.63792 -14.40699 -14.16299 -13.61049 -13.37367 -13.31596 -12.98147 -12.94966 -12.66025 -12.56916 -12.50785 -12.45836 -12.32534 -12.03158 -11.82300 -11.58957 -11.30872 -10.92380 -10.79311 -10.12919 -9.94778 -9.36890 -8.85128 -7.84418 -5.15255 0.04561 0.28016 0.96333 1.04374 1.46506 1.47348 1.54417 1.68168 2.13034 2.32054 2.49999 3.37665 3.43435 3.56187 3.64044 3.87343 3.97615 4.15822 4.23566 4.32826 4.39673 4.50850 4.60022 4.67710 4.73268 4.91826 5.02929 5.10515 5.14022 5.36302 5.37405 5.41149 5.56130 5.63356 5.78642 6.00954 6.44217 6.97291 7.05575 7.68300 8.67438 9.33260 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.003657 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.065273 B = 7654.846346 C = 8848.468830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.397 5.397 3 C 0.092 3.908 4 Cl 0.019 6.981 5 C -0.109 4.109 6 Cl -0.025 7.025 7 C -0.116 4.116 8 C -0.029 4.029 9 C 0.588 3.412 10 O -0.575 6.575 11 N -0.695 5.695 12 C 0.133 3.867 13 C 0.133 3.867 14 H 0.073 0.927 15 C -0.133 4.133 16 C 0.142 3.858 17 N -0.629 5.629 18 C -0.203 4.203 19 H 0.088 0.912 20 C -0.068 4.068 21 N -0.953 5.953 22 Si 0.961 3.039 23 H -0.285 1.285 24 H -0.300 1.300 25 H -0.274 1.274 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.175 0.825 30 H 0.411 0.589 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.023 0.977 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 16.112 11.277 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.072 5.072 3 C -0.053 4.053 4 Cl 0.048 6.952 5 C -0.144 4.144 6 Cl 0.003 6.997 7 C -0.142 4.142 8 C -0.144 4.144 9 C 0.375 3.625 10 O -0.457 6.457 11 N -0.344 5.344 12 C 0.009 3.991 13 C 0.027 3.973 14 H 0.090 0.910 15 C -0.172 4.172 16 C 0.016 3.984 17 N -0.355 5.355 18 C -0.331 4.331 19 H 0.106 0.894 20 C -0.261 4.261 21 N -0.603 5.603 22 Si 0.791 3.209 23 H -0.212 1.212 24 H -0.227 1.227 25 H -0.199 1.199 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.115 0.885 29 H 0.192 0.808 30 H 0.247 0.753 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.940 16.211 10.925 21.496 hybrid contribution 1.104 0.632 -1.234 1.772 sum -7.837 16.843 9.691 20.953 Atomic orbital electron populations 1.22568 0.73314 1.06190 1.05803 1.43902 1.08232 1.02958 1.52101 1.20718 0.88942 0.83198 1.12446 1.98406 1.89672 1.10070 1.97075 1.19649 0.86989 0.91715 1.16041 1.98344 1.39022 1.64827 1.97480 1.21456 0.95936 0.92841 1.03980 1.19937 0.89784 0.87424 1.17241 1.16875 0.85539 0.83534 0.76545 1.90765 1.17026 1.85157 1.52795 1.45601 1.10128 1.06294 1.72389 1.21717 0.97209 0.78846 1.01376 1.22591 0.91763 0.94200 0.88766 0.91019 1.23477 0.98260 0.94933 1.00541 1.22049 0.94242 0.87221 0.94887 1.45986 1.66438 1.08608 1.14484 1.19181 1.28407 0.92612 0.92920 0.89445 1.25445 1.02245 0.97363 1.01018 1.69996 1.45819 1.13116 1.31351 0.85319 0.78192 0.77884 0.79475 1.21242 1.22746 1.19893 0.88404 0.87266 0.88497 0.80763 0.75322 0.93399 0.89447 0.88194 0.90163 0.94728 0.95952 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.13 10.37 127.77 1.32 2.46 16 2 N -0.40 -9.47 3.17 -522.94 -1.66 -11.13 16 3 C 0.09 2.09 7.39 83.51 0.62 2.71 16 4 Cl 0.02 0.35 28.40 -2.72 -0.08 0.27 16 5 C -0.11 -2.65 6.66 22.06 0.15 -2.50 16 6 Cl -0.03 -0.56 29.12 -2.72 -0.08 -0.64 16 7 C -0.12 -2.91 10.34 22.58 0.23 -2.68 16 8 C -0.03 -0.80 6.89 40.30 0.28 -0.53 16 9 C 0.59 18.32 7.77 86.41 0.67 18.99 16 10 O -0.58 -20.31 14.77 -4.40 -0.06 -20.38 16 11 N -0.69 -21.20 5.31 -467.19 -2.48 -23.68 16 12 C 0.13 4.21 5.52 86.38 0.48 4.69 16 13 C 0.13 4.52 4.10 41.79 0.17 4.69 16 14 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 15 C -0.13 -4.28 8.03 30.93 0.25 -4.04 16 16 C 0.14 6.23 7.39 83.18 0.61 6.85 16 17 N -0.63 -29.08 3.65 -713.86 -2.61 -31.69 16 18 C -0.20 -10.51 10.55 84.03 0.89 -9.63 16 19 H 0.09 4.29 7.51 -2.91 -0.02 4.27 16 20 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 21 N -0.95 -56.53 11.51 21.65 0.25 -56.28 16 22 Si 0.96 45.40 29.55 68.60 2.03 47.43 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 26 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.11 1.49 7.59 -2.39 -0.02 1.47 16 28 H 0.10 2.17 6.52 -2.39 -0.02 2.15 16 29 H 0.18 3.90 7.44 -2.91 -0.02 3.88 16 30 H 0.41 11.92 7.27 -92.71 -0.67 11.25 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.08 2.60 8.12 -2.39 -0.02 2.58 16 35 H 0.03 1.77 7.13 -2.39 -0.02 1.75 16 36 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -66.18 346.06 1.89 -64.29 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.45 Total: 14.11 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 6.14 Total: 17.71 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -6.50 Total: -122.78 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.06 Total: -20.38 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.16 Total: -0.37 kcal Total: -66.18 1.89 -64.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038329921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.672 kcal (2) G-P(sol) polarization free energy of solvation -66.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds