Wall clock time and date at job start Tue Mar 31 2020 17:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 119.99928 * 2 1 4 4 O 1.21712 * 119.99790 * 185.74509 * 3 2 1 5 5 C 1.46544 * 119.99970 * 5.74826 * 3 2 1 6 6 C 1.37967 * 126.21902 * 7.31448 * 5 3 2 7 7 C 1.39793 * 107.12286 * 179.97438 * 6 5 3 8 8 Cl 1.73601 * 126.06110 * 179.97438 * 7 6 5 9 9 C 1.35723 * 107.87657 * 359.97438 * 7 6 5 10 10 Cl 1.73601 * 125.58468 * 180.02562 * 9 7 6 11 11 N 1.35658 * 108.83027 * 359.73396 * 9 7 6 12 12 C 1.46508 * 125.69412 * 180.26789 * 11 9 7 13 13 C 1.46497 * 120.00363 * 179.97438 * 2 1 3 14 14 C 1.53497 * 114.20594 * 59.99911 * 13 2 1 15 15 N 1.47063 * 87.99010 * 220.14906 * 14 13 2 16 16 C 1.36937 * 136.06037 * 207.08570 * 15 14 13 17 17 H 1.07993 * 120.00100 * 10.77268 * 16 15 14 18 18 C 1.38806 * 119.99801 * 190.76790 * 16 15 14 19 19 N 1.31617 * 120.00062 * 194.79385 * 18 16 15 20 20 Si 1.86807 * 120.00258 * 14.79403 * 18 16 15 21 21 H 1.48497 * 109.46964 * 269.99940 * 20 18 16 22 22 H 1.48504 * 109.46877 * 30.00077 * 20 18 16 23 23 H 1.48504 * 109.46895 * 149.99816 * 20 18 16 24 24 C 1.47076 * 87.88167 * 27.34172 * 15 14 13 25 25 H 1.08994 * 109.47520 * 275.39878 * 1 2 3 26 26 H 1.09004 * 109.47145 * 35.40192 * 1 2 3 27 27 H 1.09008 * 109.47131 * 155.40162 * 1 2 3 28 28 H 1.07994 * 126.44108 * 0.02562 * 6 5 3 29 29 H 1.09001 * 109.47150 * 266.05005 * 12 11 9 30 30 H 1.08995 * 109.46908 * 26.05077 * 12 11 9 31 31 H 1.09001 * 109.46771 * 146.05346 * 12 11 9 32 32 H 1.09002 * 113.28408 * 193.06994 * 13 2 1 33 33 H 1.09001 * 113.46440 * 105.36901 * 14 13 2 34 34 H 1.08993 * 113.46790 * 334.93319 * 14 13 2 35 35 H 0.96998 * 119.99967 * 354.88828 * 19 18 16 36 36 H 1.09002 * 113.46226 * 87.43998 * 24 15 14 37 37 H 1.08999 * 113.46507 * 217.87477 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3514 1.1699 -0.1055 5 6 1.4116 2.4332 0.1271 6 6 0.0657 2.5769 0.3941 7 6 -0.2029 3.9483 0.4286 8 17 -1.7489 4.6796 0.7267 9 6 0.9592 4.6067 0.1877 10 17 1.1494 6.3311 0.1265 11 7 1.9492 3.6965 0.0091 12 6 3.3544 4.0051 -0.2677 13 6 2.1975 -1.2687 0.0006 14 6 1.9060 -2.1643 -1.2115 15 7 1.9169 -3.3163 -0.2975 16 6 2.1885 -4.6545 -0.4009 17 1 2.6427 -5.0455 -1.2993 18 6 1.8800 -5.5084 0.6490 19 7 2.3915 -6.7207 0.6835 20 14 0.7388 -4.9372 2.0133 21 1 1.5367 -4.3012 3.0922 22 1 -0.2302 -3.9527 1.4682 23 1 0.0028 -6.1036 2.5637 24 6 1.5015 -2.3999 0.7752 25 1 -0.3634 0.0967 1.0230 26 1 -0.3633 0.8377 -0.5954 27 1 -0.3634 -0.9345 -0.4278 28 1 -0.6464 1.7797 0.5484 29 1 3.5226 3.9979 -1.3447 30 1 3.5953 4.9905 0.1310 31 1 3.9905 3.2565 0.2044 32 1 3.2576 -1.1540 0.2269 33 1 2.7146 -2.1823 -1.9423 34 1 0.9321 -1.9786 -1.6642 35 1 2.9236 -7.0438 -0.0603 36 1 0.4208 -2.2763 0.8462 37 1 1.9654 -2.6188 1.7370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042851286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:26 Heat of formation + Delta-G solvation = 95.106528 kcal Electronic energy + Delta-G solvation = -23774.889874 eV Core-core repulsion = 20029.626446 eV Total energy + Delta-G solvation = -3745.263428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.00332 -39.86973 -38.03202 -37.15583 -36.76545 -35.24437 -33.10153 -32.31535 -29.83284 -27.93626 -27.48061 -26.59906 -25.36496 -23.81979 -21.83620 -21.23560 -19.78795 -19.27899 -17.66183 -17.54216 -16.80402 -16.40443 -16.32644 -15.22562 -15.08630 -14.79479 -14.61876 -14.20727 -13.81744 -13.74211 -13.46648 -13.37529 -13.08879 -12.72580 -12.25322 -12.11434 -12.06915 -11.89576 -11.78466 -11.67069 -11.53185 -11.27503 -11.13498 -10.69054 -10.29223 -10.02379 -9.76140 -9.28000 -9.12245 -8.79223 -8.65690 -8.40662 -7.27272 -6.37371 -3.32233 0.92977 1.09090 1.75070 1.88406 2.47087 3.06178 3.08466 3.36737 3.42176 3.57334 4.20701 4.39219 4.53445 4.63254 4.75426 4.89235 4.97869 5.04088 5.08496 5.21997 5.30777 5.33677 5.41806 5.56224 5.72549 5.75067 5.87560 6.08938 6.19573 6.23135 6.30377 6.33144 6.36446 6.85315 7.02554 7.33076 8.01401 8.17969 8.89981 9.42188 10.26899 11.11824 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.023383 B = 0.002939 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.178991 B = 9525.293630 C =10356.232297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.581 5.581 3 C 0.587 3.413 4 O -0.543 6.543 5 C -0.007 4.007 6 C -0.141 4.141 7 C -0.098 4.098 8 Cl -0.032 7.032 9 C 0.088 3.912 10 Cl -0.001 7.001 11 N -0.395 5.395 12 C 0.061 3.939 13 C 0.104 3.896 14 C 0.107 3.893 15 N -0.615 5.615 16 C -0.307 4.307 17 H 0.083 0.917 18 C -0.021 4.021 19 N -0.927 5.927 20 Si 1.061 2.939 21 H -0.292 1.292 22 H -0.282 1.282 23 H -0.293 1.293 24 C 0.092 3.908 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.184 0.816 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.263 0.737 36 H 0.053 0.947 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 26.999 -0.955 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.312 5.312 3 C 0.375 3.625 4 O -0.423 6.423 5 C -0.122 4.122 6 C -0.166 4.166 7 C -0.133 4.133 8 Cl -0.004 7.004 9 C -0.056 4.056 10 Cl 0.028 6.972 11 N -0.071 5.071 12 C -0.079 4.079 13 C 0.000 4.000 14 C -0.021 4.021 15 N -0.343 5.343 16 C -0.433 4.433 17 H 0.101 0.899 18 C -0.221 4.221 19 N -0.569 5.569 20 Si 0.892 3.108 21 H -0.219 1.219 22 H -0.208 1.208 23 H -0.221 1.221 24 C -0.034 4.034 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.201 0.799 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.145 0.855 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.477 26.508 0.341 27.070 hybrid contribution 0.396 0.782 -1.532 1.765 sum -5.081 27.290 -1.191 27.785 Atomic orbital electron populations 1.22593 0.79600 1.04581 1.02283 1.47547 1.07136 1.05249 1.71227 1.16765 0.86320 0.82102 0.77300 1.90801 1.13321 1.87006 1.51125 1.20123 0.92760 0.84996 1.14320 1.22193 0.94474 0.94989 1.04935 1.19651 0.86723 0.92632 1.14305 1.98346 1.24822 1.82420 1.94779 1.20621 0.88630 0.83758 1.12557 1.98404 1.97519 1.04147 1.97171 1.43756 1.08494 1.03893 1.50909 1.22469 0.77446 1.04159 1.03850 1.23692 0.97717 0.78897 0.99672 1.22804 0.98827 0.86667 0.93783 1.45858 1.79736 1.03855 1.04826 1.20095 1.38101 0.79352 1.05736 0.89884 1.25858 1.00899 0.94482 1.00819 1.70897 1.35466 1.18345 1.32162 0.83778 0.76709 0.74773 0.75502 1.21933 1.20791 1.22053 1.23157 0.97848 0.87801 0.94618 0.91466 0.89519 0.89634 0.79916 0.89653 0.89402 0.86755 0.85543 0.93129 0.94315 0.92686 0.93013 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 7.45 59.84 0.45 0.99 16 2 N -0.58 -8.15 3.11 -175.14 -0.55 -8.70 16 3 C 0.59 8.39 7.62 -12.91 -0.10 8.29 16 4 O -0.54 -9.10 14.28 5.18 0.07 -9.02 16 5 C -0.01 -0.09 6.73 -81.93 -0.55 -0.64 16 6 C -0.14 -1.45 8.73 -39.10 -0.34 -1.79 16 7 C -0.10 -1.03 6.66 -39.90 -0.27 -1.29 16 8 Cl -0.03 -0.30 29.12 -51.86 -1.51 -1.81 16 9 C 0.09 0.91 7.39 -16.76 -0.12 0.79 16 10 Cl 0.00 -0.01 28.41 -51.86 -1.47 -1.48 16 11 N -0.40 -4.30 3.17 -116.64 -0.37 -4.67 16 12 C 0.06 0.53 10.41 59.85 0.62 1.16 16 13 C 0.10 1.80 4.55 -67.67 -0.31 1.49 16 14 C 0.11 2.04 8.23 -8.51 -0.07 1.97 16 15 N -0.61 -14.64 3.59 -184.61 -0.66 -15.30 16 16 C -0.31 -8.65 11.04 -15.06 -0.17 -8.81 16 17 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 18 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 19 N -0.93 -28.80 13.70 55.49 0.76 -28.04 16 20 Si 1.06 25.72 25.56 -169.99 -4.35 21.37 16 21 H -0.29 -6.82 6.99 56.52 0.40 -6.42 16 22 H -0.28 -6.16 5.68 56.52 0.32 -5.84 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 C 0.09 1.84 5.01 -8.37 -0.04 1.80 16 25 H 0.07 0.60 7.38 -51.93 -0.38 0.22 16 26 H 0.09 0.74 5.26 -51.93 -0.27 0.47 16 27 H 0.09 0.96 5.97 -51.92 -0.31 0.65 16 28 H 0.18 1.51 4.39 -52.49 -0.23 1.28 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.58 7.62 -51.93 -0.40 0.19 16 31 H 0.11 1.16 6.43 -51.93 -0.33 0.83 16 32 H 0.13 2.36 7.34 -51.93 -0.38 1.98 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.69 7.04 -51.93 -0.37 0.32 16 35 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 36 H 0.05 0.96 5.23 -51.93 -0.27 0.69 16 37 H 0.06 1.21 6.49 -51.93 -0.34 0.88 16 LS Contribution 326.27 15.07 4.92 4.92 Total: -1.00 -32.54 326.27 -7.94 -40.48 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -3.79 Total: -1.00 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -0.99 Total: 3.27 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.82 Total: -56.71 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -4.35 Total: 21.37 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -2.98 Total: -3.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.54 -7.94 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042851286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.582 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds