Wall clock time and date at job start Tue Mar 31 2020 17:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 119.99928 * 2 1 4 4 O 1.21712 * 119.99790 * 185.74509 * 3 2 1 5 5 C 1.46544 * 119.99970 * 5.74826 * 3 2 1 6 6 C 1.37967 * 126.21902 * 7.31448 * 5 3 2 7 7 C 1.39793 * 107.12286 * 179.97438 * 6 5 3 8 8 Cl 1.73601 * 126.06110 * 179.97438 * 7 6 5 9 9 C 1.35723 * 107.87657 * 359.97438 * 7 6 5 10 10 Cl 1.73601 * 125.58468 * 180.02562 * 9 7 6 11 11 N 1.35658 * 108.83027 * 359.73396 * 9 7 6 12 12 C 1.46508 * 125.69412 * 180.26789 * 11 9 7 13 13 C 1.46497 * 120.00363 * 179.97438 * 2 1 3 14 14 C 1.53497 * 114.20594 * 59.99911 * 13 2 1 15 15 N 1.47063 * 87.99010 * 220.14906 * 14 13 2 16 16 C 1.36937 * 136.06037 * 207.08570 * 15 14 13 17 17 H 1.07993 * 120.00100 * 10.77268 * 16 15 14 18 18 C 1.38806 * 119.99801 * 190.76790 * 16 15 14 19 19 N 1.31617 * 120.00062 * 194.79385 * 18 16 15 20 20 Si 1.86807 * 120.00258 * 14.79403 * 18 16 15 21 21 H 1.48497 * 109.46964 * 269.99940 * 20 18 16 22 22 H 1.48504 * 109.46877 * 30.00077 * 20 18 16 23 23 H 1.48504 * 109.46895 * 149.99816 * 20 18 16 24 24 C 1.47076 * 87.88167 * 27.34172 * 15 14 13 25 25 H 1.08994 * 109.47520 * 275.39878 * 1 2 3 26 26 H 1.09004 * 109.47145 * 35.40192 * 1 2 3 27 27 H 1.09008 * 109.47131 * 155.40162 * 1 2 3 28 28 H 1.07994 * 126.44108 * 0.02562 * 6 5 3 29 29 H 1.09001 * 109.47150 * 266.05005 * 12 11 9 30 30 H 1.08995 * 109.46908 * 26.05077 * 12 11 9 31 31 H 1.09001 * 109.46771 * 146.05346 * 12 11 9 32 32 H 1.09002 * 113.28408 * 193.06994 * 13 2 1 33 33 H 1.09001 * 113.46440 * 105.36901 * 14 13 2 34 34 H 1.08993 * 113.46790 * 334.93319 * 14 13 2 35 35 H 0.96998 * 119.99967 * 354.88828 * 19 18 16 36 36 H 1.09002 * 113.46226 * 87.43998 * 24 15 14 37 37 H 1.08999 * 113.46507 * 217.87477 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3514 1.1699 -0.1055 5 6 1.4116 2.4332 0.1271 6 6 0.0657 2.5769 0.3941 7 6 -0.2029 3.9483 0.4286 8 17 -1.7489 4.6796 0.7267 9 6 0.9592 4.6067 0.1877 10 17 1.1494 6.3311 0.1265 11 7 1.9492 3.6965 0.0091 12 6 3.3544 4.0051 -0.2677 13 6 2.1975 -1.2687 0.0006 14 6 1.9060 -2.1643 -1.2115 15 7 1.9169 -3.3163 -0.2975 16 6 2.1885 -4.6545 -0.4009 17 1 2.6427 -5.0455 -1.2993 18 6 1.8800 -5.5084 0.6490 19 7 2.3915 -6.7207 0.6835 20 14 0.7388 -4.9372 2.0133 21 1 1.5367 -4.3012 3.0922 22 1 -0.2302 -3.9527 1.4682 23 1 0.0028 -6.1036 2.5637 24 6 1.5015 -2.3999 0.7752 25 1 -0.3634 0.0967 1.0230 26 1 -0.3633 0.8377 -0.5954 27 1 -0.3634 -0.9345 -0.4278 28 1 -0.6464 1.7797 0.5484 29 1 3.5226 3.9979 -1.3447 30 1 3.5953 4.9905 0.1310 31 1 3.9905 3.2565 0.2044 32 1 3.2576 -1.1540 0.2269 33 1 2.7146 -2.1823 -1.9423 34 1 0.9321 -1.9786 -1.6642 35 1 2.9236 -7.0438 -0.0603 36 1 0.4208 -2.2763 0.8462 37 1 1.9654 -2.6188 1.7370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042851286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:25 Heat of formation + Delta-G solvation = 73.772292 kcal Electronic energy + Delta-G solvation = -23775.814996 eV Core-core repulsion = 20029.626446 eV Total energy + Delta-G solvation = -3746.188550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.85131 -41.14464 -39.38918 -37.89233 -37.50656 -36.42256 -34.55033 -33.77259 -30.96966 -29.38331 -28.54635 -27.40869 -26.94560 -25.23036 -23.13034 -22.21979 -21.08840 -20.47571 -19.51165 -18.54313 -18.00089 -17.49295 -17.26572 -16.73236 -16.32330 -15.83057 -15.58046 -15.40656 -15.25616 -15.00505 -14.73582 -14.19621 -14.05863 -13.68450 -13.60140 -13.41679 -13.40588 -13.03211 -12.94481 -12.62622 -12.50510 -12.44185 -12.30756 -11.97331 -11.89850 -11.51062 -11.30129 -11.12771 -10.84585 -9.91284 -9.74166 -9.33605 -9.26445 -8.63354 -5.50818 0.05246 0.32208 1.00307 1.07934 1.42839 1.51985 1.56306 1.69294 2.05517 2.13950 2.56854 3.02205 3.16120 3.32392 3.53898 3.66340 3.88715 4.07579 4.20375 4.23157 4.24778 4.34221 4.50209 4.56110 4.60581 4.61274 4.65121 4.73161 4.94184 5.03198 5.08153 5.18161 5.39065 5.50443 5.59368 5.93899 6.24571 6.67291 6.92834 7.30392 8.23173 8.87260 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.023383 B = 0.002939 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.178991 B = 9525.293630 C =10356.232297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.580 5.580 3 C 0.588 3.412 4 O -0.576 6.576 5 C -0.030 4.030 6 C -0.123 4.123 7 C -0.110 4.110 8 Cl -0.023 7.023 9 C 0.091 3.909 10 Cl 0.014 6.986 11 N -0.399 5.399 12 C 0.059 3.941 13 C 0.130 3.870 14 C 0.108 3.892 15 N -0.648 5.648 16 C -0.294 4.294 17 H 0.048 0.952 18 C -0.081 4.081 19 N -0.966 5.966 20 Si 1.100 2.900 21 H -0.279 1.279 22 H -0.240 1.240 23 H -0.302 1.302 24 C 0.092 3.908 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.206 0.794 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.247 0.753 36 H 0.081 0.919 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 30.210 -0.267 31.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.310 5.310 3 C 0.378 3.622 4 O -0.458 6.458 5 C -0.144 4.144 6 C -0.148 4.148 7 C -0.145 4.145 8 Cl 0.005 6.995 9 C -0.054 4.054 10 Cl 0.042 6.958 11 N -0.075 5.075 12 C -0.080 4.080 13 C 0.024 3.976 14 C -0.018 4.018 15 N -0.377 5.377 16 C -0.422 4.422 17 H 0.065 0.935 18 C -0.274 4.274 19 N -0.610 5.610 20 Si 0.923 3.077 21 H -0.206 1.206 22 H -0.164 1.164 23 H -0.230 1.230 24 C -0.034 4.034 25 H 0.109 0.891 26 H 0.128 0.872 27 H 0.102 0.898 28 H 0.222 0.778 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.858 29.793 0.997 30.828 hybrid contribution 1.170 -0.036 -1.858 2.197 sum -6.688 29.757 -0.862 30.512 Atomic orbital electron populations 1.22931 0.77098 1.05545 1.04359 1.47427 1.08486 1.03836 1.71254 1.17009 0.85983 0.82793 0.76436 1.90792 1.14887 1.87519 1.52574 1.19785 0.93307 0.84442 1.16841 1.22448 0.93894 0.95533 1.02960 1.19779 0.87189 0.92854 1.14639 1.98353 1.24100 1.82271 1.94734 1.20841 0.88595 0.84496 1.11482 1.98414 1.97480 1.02825 1.97040 1.43899 1.09136 1.03740 1.50717 1.22544 0.76483 1.04701 1.04315 1.22936 0.96972 0.80117 0.97525 1.22967 0.99779 0.85065 0.93991 1.45808 1.80564 1.03177 1.08141 1.19897 1.36292 0.81851 1.04134 0.93451 1.27258 1.02159 0.94118 1.03833 1.71019 1.37614 1.20190 1.32215 0.83379 0.75760 0.75197 0.73343 1.20551 1.16392 1.22992 1.23348 0.99372 0.87237 0.93392 0.89050 0.87232 0.89786 0.77775 0.88943 0.87314 0.88380 0.87305 0.94069 0.91580 0.94413 0.90146 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 7.45 127.77 0.95 1.64 16 2 N -0.58 -14.64 3.11 -826.24 -2.57 -17.22 16 3 C 0.59 15.69 7.62 86.41 0.66 16.35 16 4 O -0.58 -18.97 14.28 -4.39 -0.06 -19.03 16 5 C -0.03 -0.64 6.73 40.31 0.27 -0.36 16 6 C -0.12 -2.08 8.73 22.58 0.20 -1.88 16 7 C -0.11 -1.94 6.66 22.06 0.15 -1.79 16 8 Cl -0.02 -0.37 29.12 -2.72 -0.08 -0.44 16 9 C 0.09 1.63 7.39 83.52 0.62 2.25 16 10 Cl 0.01 0.20 28.41 -2.72 -0.08 0.13 16 11 N -0.40 -7.83 3.17 -522.93 -1.66 -9.49 16 12 C 0.06 0.95 10.41 127.77 1.33 2.29 16 13 C 0.13 4.27 4.55 45.55 0.21 4.48 16 14 C 0.11 4.00 8.23 83.18 0.68 4.69 16 15 N -0.65 -30.35 3.59 -737.99 -2.65 -33.01 16 16 C -0.29 -16.94 11.04 84.03 0.93 -16.02 16 17 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 18 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 19 N -0.97 -62.13 13.70 21.65 0.30 -61.83 16 20 Si 1.10 50.83 25.56 68.60 1.75 52.59 16 21 H -0.28 -12.23 6.99 99.48 0.70 -11.53 16 22 H -0.24 -9.32 5.68 99.48 0.57 -8.76 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 24 C 0.09 3.42 5.01 83.26 0.42 3.84 16 25 H 0.09 1.14 7.38 -2.39 -0.02 1.12 16 26 H 0.11 1.36 5.26 -2.39 -0.01 1.34 16 27 H 0.08 1.48 5.97 -2.38 -0.01 1.47 16 28 H 0.21 2.38 4.39 -2.91 -0.01 2.36 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 1.23 7.62 -2.39 -0.02 1.21 16 31 H 0.10 1.95 6.43 -2.39 -0.02 1.94 16 32 H 0.11 4.03 7.34 -2.39 -0.02 4.01 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 2.14 7.04 -2.39 -0.02 2.12 16 35 H 0.25 15.99 8.73 -92.71 -0.81 15.18 16 36 H 0.08 2.59 5.23 -2.39 -0.01 2.57 16 37 H 0.05 1.96 6.49 -2.39 -0.02 1.94 16 Total: -1.00 -72.73 326.27 2.77 -69.96 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.94 Total: 7.21 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.88 Total: 11.14 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -6.59 Total: -121.54 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.06 Total: -19.03 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 1.75 Total: 52.59 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.16 Total: -0.32 kcal Total: -72.73 2.77 -69.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042851286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.732 kcal (2) G-P(sol) polarization free energy of solvation -72.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds