Wall clock time and date at job start Tue Mar 31 2020 17:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 110.88525 * 2 1 4 4 C 1.34775 * 120.00105 * 62.42639 * 3 2 1 5 5 O 1.21716 * 119.99914 * 359.97438 * 4 3 2 6 6 C 1.46543 * 120.00055 * 180.02562 * 4 3 2 7 7 C 1.37952 * 126.22429 * 179.97438 * 6 4 3 8 8 C 1.39796 * 107.13177 * 179.97438 * 7 6 4 9 9 Cl 1.73596 * 126.06276 * 180.02562 * 8 7 6 10 10 C 1.35720 * 107.87233 * 0.02562 * 8 7 6 11 11 Cl 1.73601 * 125.58298 * 179.73560 * 10 8 7 12 12 N 1.35664 * 108.83347 * 359.97438 * 10 8 7 13 13 H 0.96997 * 125.70194 * 180.02562 * 12 10 8 14 14 C 1.55157 * 111.03836 * 236.09497 * 2 1 3 15 15 C 1.54318 * 102.94150 * 206.40711 * 14 2 1 16 16 N 1.47019 * 107.27468 * 22.19189 * 15 14 2 17 17 C 1.36935 * 125.65214 * 181.01988 * 16 15 14 18 18 H 1.08004 * 120.00207 * 173.97851 * 17 16 15 19 19 C 1.38811 * 119.99943 * 353.98306 * 17 16 15 20 20 N 1.31621 * 119.99867 * 6.84873 * 19 17 16 21 21 Si 1.86794 * 120.00318 * 186.84193 * 19 17 16 22 22 H 1.48501 * 109.47161 * 94.98687 * 21 19 17 23 23 H 1.48502 * 109.47745 * 214.98887 * 21 19 17 24 24 H 1.48508 * 109.47225 * 334.99043 * 21 19 17 25 25 C 1.47430 * 108.70135 * 1.06206 * 16 15 14 26 26 H 1.08993 * 109.47473 * 60.70348 * 1 2 3 27 27 H 1.09007 * 109.46631 * 180.70391 * 1 2 3 28 28 H 1.09001 * 109.46986 * 300.70106 * 1 2 3 29 29 H 0.97000 * 119.99644 * 242.42914 * 3 2 1 30 30 H 1.08005 * 126.43942 * 359.97438 * 7 6 4 31 31 H 1.09004 * 110.71557 * 324.76820 * 14 2 1 32 32 H 1.08997 * 110.72123 * 88.04011 * 14 2 1 33 33 H 1.08996 * 109.88177 * 262.77331 * 15 14 2 34 34 H 1.09007 * 110.01168 * 141.68281 * 15 14 2 35 35 H 0.97000 * 119.99827 * 179.97438 * 20 19 17 36 36 H 1.08999 * 110.36108 * 217.03316 * 25 16 15 37 37 H 1.08999 * 110.45924 * 94.75641 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1146 1.7965 1.9688 6 6 2.3097 3.5603 1.0343 7 6 2.1186 4.5058 2.0205 8 6 2.7875 5.6645 1.6153 9 17 2.8665 7.1593 2.4945 10 6 3.3641 5.4136 0.4125 11 17 4.3042 6.5426 -0.5122 12 7 3.0810 4.1376 0.0489 13 1 3.3728 3.7039 -0.7682 14 6 2.0870 -0.8078 -1.2019 15 6 3.4684 -1.2731 -0.6951 16 7 3.4276 -1.2419 0.7741 17 6 4.4643 -1.5648 1.6084 18 1 4.3663 -1.4171 2.6738 19 6 5.6413 -2.0820 1.0848 20 7 5.8134 -2.1365 -0.2190 21 14 6.9808 -2.7004 2.2304 22 1 6.8354 -4.1666 2.4161 23 1 8.3115 -2.4058 1.6408 24 1 6.8605 -2.0206 3.5453 25 6 2.0853 -0.8061 1.2006 26 1 -0.3634 0.5028 -0.8961 27 1 -0.3633 -1.0277 0.0126 28 1 -0.3633 0.5247 0.8836 29 1 2.5885 1.6832 -0.7447 30 1 1.5576 4.3754 2.9342 31 1 1.4482 -1.6635 -1.4206 32 1 2.1929 -0.1699 -2.0794 33 1 4.2432 -0.5984 -1.0589 34 1 3.6694 -2.2879 -1.0389 35 1 6.6360 -2.4976 -0.5848 36 1 2.1554 -0.1713 2.0839 37 1 1.4513 -1.6692 1.4039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046517949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:22 Heat of formation + Delta-G solvation = 25.833921 kcal Electronic energy + Delta-G solvation = -24018.315389 eV Core-core repulsion = 20270.048075 eV Total energy + Delta-G solvation = -3748.267314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.66891 -39.65433 -37.34519 -37.00337 -36.62816 -34.11878 -32.23071 -31.26706 -30.30642 -29.06557 -28.64129 -25.74037 -24.03160 -23.11506 -21.24169 -20.65517 -20.34384 -19.31909 -18.98233 -16.99137 -16.30478 -15.65952 -15.59459 -14.97908 -14.69490 -14.45222 -14.19713 -13.95166 -13.73216 -13.51017 -13.27027 -12.85282 -12.23317 -12.13854 -12.04945 -12.00210 -11.81312 -11.73050 -11.67007 -11.08241 -10.97340 -10.91278 -10.56406 -10.46924 -10.14428 -10.09331 -9.71201 -9.60357 -9.22576 -8.83605 -8.61325 -8.41282 -6.84599 -5.76580 -3.07453 1.07384 1.22248 1.91087 2.05037 2.94963 3.24953 3.38139 3.39322 3.44883 3.46208 4.47907 4.62041 4.70576 4.98711 5.22419 5.30391 5.39539 5.44851 5.52950 5.63922 5.89172 5.97966 6.01068 6.07095 6.21576 6.24771 6.29901 6.43428 6.56993 6.69910 6.76736 6.98771 7.43854 7.51727 7.64460 7.76359 8.21148 8.28592 9.19014 9.79210 10.44863 11.35955 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012094 B = 0.003634 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.673065 B = 7702.354716 C = 8616.278622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.156 3.844 3 N -0.698 5.698 4 C 0.592 3.408 5 O -0.516 6.516 6 C -0.004 4.004 7 C -0.092 4.092 8 C -0.098 4.098 9 Cl -0.032 7.032 10 C 0.095 3.905 11 Cl 0.000 7.000 12 N -0.520 5.520 13 H 0.428 0.572 14 C -0.146 4.146 15 C 0.176 3.824 16 N -0.603 5.603 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.131 3.869 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.391 0.609 30 H 0.168 0.832 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.048 0.952 35 H 0.251 0.749 36 H 0.057 0.943 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.182 15.710 -3.686 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 N -0.347 5.347 4 C 0.378 3.622 5 O -0.392 6.392 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.133 4.133 9 Cl -0.003 7.003 10 C -0.049 4.049 11 Cl 0.029 6.971 12 N -0.121 5.121 13 H 0.268 0.732 14 C -0.185 4.185 15 C 0.051 3.949 16 N -0.329 5.329 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.571 5.571 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.004 3.996 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.225 0.775 30 H 0.185 0.815 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.324 15.423 -3.167 17.809 hybrid contribution 1.535 -0.130 -0.393 1.590 sum -6.789 15.292 -3.560 17.106 Atomic orbital electron populations 1.21999 0.93996 1.02461 1.02370 1.21577 0.92736 0.79992 0.98712 1.45705 1.53933 1.13261 1.21803 1.16703 0.80345 0.82250 0.82935 1.90838 1.38992 1.74787 1.34594 1.20675 1.03860 0.95510 0.91807 1.21117 1.01708 0.89209 0.99824 1.19572 1.08323 0.91169 0.94212 1.98341 1.97678 1.29811 1.74506 1.20533 1.04355 0.85125 0.94921 1.98422 1.70076 1.55949 1.72669 1.41925 1.40880 1.09462 1.19833 0.73192 1.23236 1.00617 0.98959 0.95656 1.21166 0.89755 1.00084 0.83856 1.44438 1.07567 1.79218 1.01685 1.19075 0.91880 1.34716 0.89514 0.90498 1.24774 0.98157 1.01394 0.96007 1.69953 1.26378 1.51303 1.09481 0.86138 0.81197 0.78937 0.79798 1.21588 1.21841 1.20605 1.21903 0.87610 0.95026 0.95064 0.93057 0.91535 0.90882 0.77526 0.81497 0.90563 0.91864 0.94193 0.93389 0.93861 0.92507 0.95398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.62 37.16 0.32 -1.78 16 2 C 0.16 2.56 0.82 -129.67 -0.11 2.46 16 3 N -0.70 -10.35 5.17 -46.95 -0.24 -10.60 16 4 C 0.59 9.28 7.17 -12.91 -0.09 9.19 16 5 O -0.52 -9.51 13.65 5.17 0.07 -9.44 16 6 C 0.00 -0.06 7.06 -81.93 -0.58 -0.63 16 7 C -0.09 -1.19 10.64 -39.10 -0.42 -1.61 16 8 C -0.10 -1.18 6.66 -39.90 -0.27 -1.44 16 9 Cl -0.03 -0.35 29.12 -51.86 -1.51 -1.86 16 10 C 0.09 1.07 7.75 -16.76 -0.13 0.94 16 11 Cl 0.00 0.00 29.13 -51.86 -1.51 -1.51 16 12 N -0.52 -5.67 6.01 -6.51 -0.04 -5.71 16 13 H 0.43 3.65 8.19 -40.82 -0.33 3.31 16 14 C -0.15 -2.40 5.99 -24.90 -0.15 -2.55 16 15 C 0.18 3.97 5.37 -3.07 -0.02 3.96 16 16 N -0.60 -14.95 3.39 -170.07 -0.58 -15.52 16 17 C -0.22 -6.21 10.26 -15.06 -0.15 -6.36 16 18 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 19 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 20 N -0.92 -26.38 10.36 55.49 0.57 -25.81 16 21 Si 0.91 22.14 29.56 -169.99 -5.02 17.11 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.13 2.75 6.11 -2.53 -0.02 2.73 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 28 H 0.07 1.12 6.45 -51.93 -0.33 0.78 16 29 H 0.39 4.90 7.62 -40.82 -0.31 4.59 16 30 H 0.17 2.03 8.06 -52.48 -0.42 1.61 16 31 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 32 H 0.06 0.87 8.05 -51.93 -0.42 0.46 16 33 H 0.04 0.98 7.54 -51.93 -0.39 0.59 16 34 H 0.05 1.22 7.36 -51.92 -0.38 0.84 16 35 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.06 1.29 6.31 -51.93 -0.33 0.97 16 37 H 0.03 0.59 8.03 -51.93 -0.42 0.17 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -31.23 337.70 -9.02 -40.24 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.15 Total: 3.42 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -1.70 Total: 4.59 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.28 Total: -57.63 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -3.02 Total: -3.37 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.23 -9.02 -40.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046517949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.077 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds