Wall clock time and date at job start Tue Mar 31 2020 17:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 110.88525 * 2 1 4 4 C 1.34775 * 120.00105 * 62.42639 * 3 2 1 5 5 O 1.21716 * 119.99914 * 359.97438 * 4 3 2 6 6 C 1.46543 * 120.00055 * 180.02562 * 4 3 2 7 7 C 1.37952 * 126.22429 * 179.97438 * 6 4 3 8 8 C 1.39796 * 107.13177 * 179.97438 * 7 6 4 9 9 Cl 1.73596 * 126.06276 * 180.02562 * 8 7 6 10 10 C 1.35720 * 107.87233 * 0.02562 * 8 7 6 11 11 Cl 1.73601 * 125.58298 * 179.73560 * 10 8 7 12 12 N 1.35664 * 108.83347 * 359.97438 * 10 8 7 13 13 H 0.96997 * 125.70194 * 180.02562 * 12 10 8 14 14 C 1.55157 * 111.03836 * 236.09497 * 2 1 3 15 15 C 1.54318 * 102.94150 * 206.40711 * 14 2 1 16 16 N 1.47019 * 107.27468 * 22.19189 * 15 14 2 17 17 C 1.36935 * 125.65214 * 181.01988 * 16 15 14 18 18 H 1.08004 * 120.00207 * 173.97851 * 17 16 15 19 19 C 1.38811 * 119.99943 * 353.98306 * 17 16 15 20 20 N 1.31621 * 119.99867 * 6.84873 * 19 17 16 21 21 Si 1.86794 * 120.00318 * 186.84193 * 19 17 16 22 22 H 1.48501 * 109.47161 * 94.98687 * 21 19 17 23 23 H 1.48502 * 109.47745 * 214.98887 * 21 19 17 24 24 H 1.48508 * 109.47225 * 334.99043 * 21 19 17 25 25 C 1.47430 * 108.70135 * 1.06206 * 16 15 14 26 26 H 1.08993 * 109.47473 * 60.70348 * 1 2 3 27 27 H 1.09007 * 109.46631 * 180.70391 * 1 2 3 28 28 H 1.09001 * 109.46986 * 300.70106 * 1 2 3 29 29 H 0.97000 * 119.99644 * 242.42914 * 3 2 1 30 30 H 1.08005 * 126.43942 * 359.97438 * 7 6 4 31 31 H 1.09004 * 110.71557 * 324.76820 * 14 2 1 32 32 H 1.08997 * 110.72123 * 88.04011 * 14 2 1 33 33 H 1.08996 * 109.88177 * 262.77331 * 15 14 2 34 34 H 1.09007 * 110.01168 * 141.68281 * 15 14 2 35 35 H 0.97000 * 119.99827 * 179.97438 * 20 19 17 36 36 H 1.08999 * 110.36108 * 217.03316 * 25 16 15 37 37 H 1.08999 * 110.45924 * 94.75641 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1146 1.7965 1.9688 6 6 2.3097 3.5603 1.0343 7 6 2.1186 4.5058 2.0205 8 6 2.7875 5.6645 1.6153 9 17 2.8665 7.1593 2.4945 10 6 3.3641 5.4136 0.4125 11 17 4.3042 6.5426 -0.5122 12 7 3.0810 4.1376 0.0489 13 1 3.3728 3.7039 -0.7682 14 6 2.0870 -0.8078 -1.2019 15 6 3.4684 -1.2731 -0.6951 16 7 3.4276 -1.2419 0.7741 17 6 4.4643 -1.5648 1.6084 18 1 4.3663 -1.4171 2.6738 19 6 5.6413 -2.0820 1.0848 20 7 5.8134 -2.1365 -0.2190 21 14 6.9808 -2.7004 2.2304 22 1 6.8354 -4.1666 2.4161 23 1 8.3115 -2.4058 1.6408 24 1 6.8605 -2.0206 3.5453 25 6 2.0853 -0.8061 1.2006 26 1 -0.3634 0.5028 -0.8961 27 1 -0.3633 -1.0277 0.0126 28 1 -0.3633 0.5247 0.8836 29 1 2.5885 1.6832 -0.7447 30 1 1.5576 4.3754 2.9342 31 1 1.4482 -1.6635 -1.4206 32 1 2.1929 -0.1699 -2.0794 33 1 4.2432 -0.5984 -1.0589 34 1 3.6694 -2.2879 -1.0389 35 1 6.6360 -2.4976 -0.5848 36 1 2.1554 -0.1713 2.0839 37 1 1.4513 -1.6692 1.4039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046517949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:21 Heat of formation + Delta-G solvation = 5.484998 kcal Electronic energy + Delta-G solvation = -24019.197784 eV Core-core repulsion = 20270.048075 eV Total energy + Delta-G solvation = -3749.149709 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.66239 -40.95787 -38.78976 -37.90743 -37.52647 -35.76181 -33.84292 -32.34366 -31.84763 -30.50957 -29.85895 -27.51953 -25.57090 -24.41246 -22.33034 -22.10181 -21.57337 -20.60569 -20.21000 -18.85694 -17.43887 -17.14343 -16.66941 -16.64480 -15.95886 -15.78926 -15.52393 -15.36199 -15.11016 -14.67332 -14.45216 -14.13795 -13.88895 -13.55711 -13.43098 -13.12731 -13.00715 -12.92020 -12.81345 -12.75165 -12.50141 -12.18598 -12.06516 -12.02091 -11.94856 -11.72530 -11.58596 -10.94916 -10.70066 -10.20636 -10.11037 -9.38894 -8.85973 -7.88813 -5.20510 0.05360 0.31471 1.00615 1.06886 1.43092 1.44425 1.52885 1.90307 2.18736 2.23957 2.47127 3.30177 3.50476 3.66442 3.70476 3.78522 4.03486 4.17090 4.22703 4.46929 4.62994 4.69518 4.75183 4.88756 4.93525 4.98615 5.06456 5.08713 5.23774 5.37904 5.43200 5.57334 5.67016 5.75450 5.85859 6.19246 6.46910 7.08643 7.11363 7.76923 8.40798 9.21377 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012094 B = 0.003634 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.673065 B = 7702.354716 C = 8616.278622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.167 3.833 3 N -0.694 5.694 4 C 0.592 3.408 5 O -0.549 6.549 6 C -0.020 4.020 7 C -0.095 4.095 8 C -0.110 4.110 9 Cl -0.023 7.023 10 C 0.104 3.896 11 Cl 0.019 6.981 12 N -0.508 5.508 13 H 0.439 0.561 14 C -0.127 4.127 15 C 0.183 3.817 16 N -0.621 5.621 17 C -0.241 4.241 18 H 0.067 0.933 19 C -0.055 4.055 20 N -0.942 5.942 21 Si 0.968 3.032 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.275 1.275 25 C 0.126 3.874 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.404 0.596 30 H 0.168 0.832 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.014 0.986 34 H 0.011 0.989 35 H 0.247 0.753 36 H 0.034 0.966 37 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.678 16.834 -4.727 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.081 3.919 3 N -0.344 5.344 4 C 0.379 3.621 5 O -0.427 6.427 6 C -0.134 4.134 7 C -0.121 4.121 8 C -0.144 4.144 9 Cl 0.005 6.995 10 C -0.042 4.042 11 Cl 0.047 6.953 12 N -0.110 5.110 13 H 0.281 0.719 14 C -0.166 4.166 15 C 0.058 3.942 16 N -0.347 5.347 17 C -0.371 4.371 18 H 0.085 0.915 19 C -0.248 4.248 20 N -0.591 5.591 21 Si 0.797 3.203 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.201 1.201 25 C 0.000 4.000 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.239 0.761 30 H 0.186 0.814 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.831 16.558 -4.238 19.238 hybrid contribution 1.720 -0.415 -0.035 1.770 sum -7.111 16.143 -4.272 18.149 Atomic orbital electron populations 1.21932 0.91483 1.03396 1.03090 1.21426 0.94342 0.80109 0.96048 1.45633 1.53997 1.12552 1.22202 1.16932 0.79768 0.82962 0.82421 1.90819 1.40533 1.75662 1.35732 1.20279 1.05410 0.94706 0.93007 1.21248 1.01531 0.89538 0.99819 1.19634 1.08661 0.91415 0.94721 1.98343 1.97659 1.29091 1.74384 1.20659 1.03528 0.85251 0.94743 1.98435 1.69477 1.55216 1.72139 1.41839 1.40106 1.09273 1.19762 0.71865 1.23110 0.96777 1.00120 0.96548 1.20971 0.92889 0.97594 0.82722 1.44677 1.08279 1.79149 1.02589 1.19298 0.93136 1.34861 0.89769 0.91459 1.25468 1.00107 1.01855 0.97410 1.70134 1.26561 1.51785 1.10630 0.85217 0.78578 0.78230 0.78277 1.21366 1.21760 1.20051 1.22021 0.86240 0.95254 0.96459 0.90229 0.90482 0.92283 0.76063 0.81425 0.88789 0.88206 0.96745 0.97051 0.94329 0.94784 0.95482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.62 71.98 0.62 -2.96 16 2 C 0.17 5.23 0.82 5.00 0.00 5.24 16 3 N -0.69 -19.62 5.17 -420.66 -2.17 -21.79 16 4 C 0.59 18.22 7.17 86.41 0.62 18.84 16 5 O -0.55 -20.36 13.65 -4.40 -0.06 -20.42 16 6 C -0.02 -0.51 7.06 40.30 0.28 -0.22 16 7 C -0.09 -2.39 10.64 22.58 0.24 -2.15 16 8 C -0.11 -2.50 6.66 22.06 0.15 -2.35 16 9 Cl -0.02 -0.48 29.12 -2.72 -0.08 -0.56 16 10 C 0.10 2.15 7.75 83.52 0.65 2.80 16 11 Cl 0.02 0.33 29.13 -2.72 -0.08 0.25 16 12 N -0.51 -10.25 6.01 -174.52 -1.05 -11.30 16 13 H 0.44 6.60 8.19 -92.71 -0.76 5.84 16 14 C -0.13 -3.90 5.99 31.78 0.19 -3.71 16 15 C 0.18 8.29 5.37 86.73 0.47 8.76 16 16 N -0.62 -31.30 3.39 -691.99 -2.35 -33.65 16 17 C -0.24 -13.72 10.26 84.03 0.86 -12.86 16 18 H 0.07 3.84 7.84 -2.91 -0.02 3.81 16 19 C -0.05 -3.09 5.48 84.86 0.47 -2.63 16 20 N -0.94 -54.82 10.36 21.65 0.22 -54.59 16 21 Si 0.97 46.03 29.56 68.60 2.03 48.06 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 C 0.13 5.34 6.11 86.85 0.53 5.87 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 1.81 8.13 -2.38 -0.02 1.79 16 28 H 0.06 1.71 6.45 -2.39 -0.02 1.70 16 29 H 0.40 9.29 7.62 -92.71 -0.71 8.58 16 30 H 0.17 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.09 2.61 8.04 -2.38 -0.02 2.59 16 32 H 0.10 2.38 8.05 -2.39 -0.02 2.36 16 33 H 0.01 0.71 7.54 -2.39 -0.02 0.70 16 34 H 0.01 0.59 7.36 -2.38 -0.02 0.57 16 35 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 36 H 0.03 1.59 6.31 -2.39 -0.02 1.57 16 37 H 0.03 1.15 8.03 -2.39 -0.02 1.13 16 Total: -1.00 -68.83 337.70 1.22 -67.62 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -0.32 Total: 11.75 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 5.08 Total: 14.63 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -5.35 Total: -121.33 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.06 Total: -20.42 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.16 Total: -0.31 kcal Total: -68.83 1.22 -67.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046517949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.102 kcal (2) G-P(sol) polarization free energy of solvation -68.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds