Wall clock time and date at job start Tue Mar 31 2020 17:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34779 * 120.00193 * 2 1 4 4 O 1.21633 * 119.99585 * 176.42272 * 3 2 1 5 5 C 1.47238 * 119.99749 * 356.42612 * 3 2 1 6 6 C 1.35153 * 123.13588 * 186.61063 * 5 3 2 7 7 S 1.70935 * 108.86252 * 179.90457 * 6 5 3 8 8 C 1.70764 * 91.14590 * 0.30856 * 7 6 5 9 9 Cl 1.73603 * 124.72528 * 179.82380 * 8 7 6 10 10 N 1.28770 * 110.55237 * 359.81941 * 8 7 6 11 11 C 1.46504 * 119.99658 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.63933 * 178.30980 * 11 2 1 13 13 C 1.54323 * 110.72046 * 301.45115 * 11 2 1 14 14 N 1.47019 * 107.26986 * 140.73869 * 13 11 2 15 15 C 1.36937 * 125.64858 * 181.02368 * 14 13 11 16 16 H 1.08002 * 119.99965 * 12.46469 * 15 14 13 17 17 C 1.38813 * 119.99897 * 192.46201 * 15 14 13 18 18 N 1.31623 * 119.99665 * 205.15605 * 17 15 14 19 19 Si 1.86800 * 120.00128 * 25.16235 * 17 15 14 20 20 H 1.48493 * 109.46943 * 269.99925 * 19 17 15 21 21 H 1.48501 * 109.47175 * 149.99675 * 19 17 15 22 22 H 1.48507 * 109.47149 * 29.99968 * 19 17 15 23 23 C 1.47427 * 108.70258 * 1.28562 * 14 13 11 24 24 C 1.55127 * 104.72295 * 335.55455 * 23 14 13 25 25 H 1.09000 * 111.19215 * 279.18908 * 24 23 14 26 26 O 1.42900 * 110.93653 * 155.29035 * 24 23 14 27 27 H 1.09007 * 109.47411 * 275.94874 * 1 2 3 28 28 H 1.08998 * 109.47352 * 35.94983 * 1 2 3 29 29 H 1.09008 * 109.47511 * 155.95123 * 1 2 3 30 30 H 1.08000 * 125.57087 * 0.02969 * 6 5 3 31 31 H 1.08994 * 109.88494 * 21.31511 * 13 11 2 32 32 H 1.09010 * 110.00965 * 260.22565 * 13 11 2 33 33 H 0.96993 * 120.00337 * 354.94553 * 18 17 15 34 34 H 1.09004 * 110.36535 * 94.48778 * 23 14 13 35 35 H 1.09001 * 110.36504 * 216.80782 * 23 14 13 36 36 H 0.96698 * 114.00411 * 67.96134 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3534 1.1681 0.0657 5 6 1.4048 2.4411 -0.0795 6 6 2.0162 3.6388 -0.2144 7 16 0.8253 4.8638 -0.2711 8 6 -0.4205 3.7082 -0.1024 9 17 -2.1151 4.0814 -0.0505 10 7 0.0721 2.5214 -0.0191 11 6 2.1974 -1.2688 -0.0006 12 1 3.2725 -1.0918 -0.0306 13 6 1.8181 -2.1188 1.2304 14 7 1.7365 -3.5179 0.7864 15 6 1.4058 -4.5875 1.5749 16 1 0.9848 -4.4252 2.5562 17 6 1.6116 -5.8802 1.1130 18 7 0.8876 -6.8717 1.5877 19 14 2.9160 -6.2128 -0.1821 20 1 2.3136 -6.0914 -1.5339 21 1 3.4545 -7.5849 -0.0014 22 1 4.0171 -5.2264 -0.0404 23 6 2.0758 -3.5795 -0.6470 24 6 1.7548 -2.1621 -1.1894 25 1 0.6891 -2.0483 -1.3882 26 8 2.5245 -1.8765 -2.3591 27 1 -0.3634 0.1065 1.0222 28 1 -0.3634 0.8319 -0.6033 29 1 -0.3634 -0.9385 -0.4188 30 1 3.0827 3.7962 -0.2781 31 1 0.8526 -1.7965 1.6202 32 1 2.5813 -2.0187 2.0023 33 1 0.2620 -6.7122 2.3116 34 1 3.1338 -3.8074 -0.7769 35 1 1.4615 -4.3260 -1.1505 36 1 2.2837 -2.4105 -3.1285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047588868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:23 Heat of formation + Delta-G solvation = -11.635317 kcal Electronic energy + Delta-G solvation = -24108.075977 eV Core-core repulsion = 20360.227581 eV Total energy + Delta-G solvation = -3747.848395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.02779 -40.55764 -39.32242 -37.98555 -36.90261 -36.50811 -34.22322 -31.79871 -30.87153 -29.52119 -27.96497 -27.25677 -25.68621 -23.81961 -22.77801 -21.47322 -20.78094 -19.88673 -19.63503 -18.64501 -18.03267 -17.39006 -17.25510 -17.00804 -16.23142 -16.06406 -15.72638 -15.52554 -15.39649 -15.03432 -14.71727 -14.50328 -14.20043 -13.96848 -13.60535 -13.47135 -13.31815 -13.01033 -12.97318 -12.79821 -12.54788 -12.51459 -11.92512 -11.71325 -11.51781 -11.45507 -11.05001 -10.87990 -10.69399 -10.65049 -10.10258 -9.76011 -9.25784 -8.68023 -5.51465 -0.76711 -0.40520 0.27613 0.58970 0.68782 1.36976 1.52540 1.67427 1.75400 2.03637 2.46955 2.78645 2.99253 3.09145 3.35762 3.55757 3.71634 3.78187 3.90426 3.96481 4.15857 4.27876 4.29126 4.38509 4.61552 4.67588 4.74386 4.83374 4.87949 5.08364 5.32478 5.50073 5.95444 6.03706 6.19349 6.72139 6.78061 6.85822 7.36057 8.01700 8.80203 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.003105 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.294318 B = 9015.045538 C = 9586.757592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.584 5.584 3 C 0.589 3.411 4 O -0.566 6.566 5 C 0.000 4.000 6 C -0.222 4.222 7 S 0.394 5.606 8 C 0.017 3.983 9 Cl 0.042 6.958 10 N -0.445 5.445 11 C 0.145 3.855 12 H 0.099 0.901 13 C 0.132 3.868 14 N -0.619 5.619 15 C -0.322 4.322 16 H 0.048 0.952 17 C -0.068 4.068 18 N -0.949 5.949 19 Si 1.101 2.899 20 H -0.262 1.262 21 H -0.302 1.302 22 H -0.276 1.276 23 C 0.074 3.926 24 C 0.100 3.900 25 H 0.091 0.909 26 O -0.562 6.562 27 H 0.056 0.944 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.210 0.790 31 H 0.043 0.957 32 H 0.026 0.974 33 H 0.251 0.749 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.773 29.371 -9.079 30.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.313 5.313 3 C 0.376 3.624 4 O -0.445 6.445 5 C -0.135 4.135 6 C -0.365 4.365 7 S 0.647 5.353 8 C -0.286 4.286 9 Cl 0.069 6.931 10 N -0.165 5.165 11 C 0.041 3.959 12 H 0.117 0.883 13 C 0.006 3.994 14 N -0.348 5.348 15 C -0.451 4.451 16 H 0.066 0.934 17 C -0.263 4.263 18 N -0.592 5.592 19 Si 0.927 3.073 20 H -0.188 1.188 21 H -0.230 1.230 22 H -0.202 1.202 23 C -0.051 4.051 24 C 0.039 3.961 25 H 0.108 0.892 26 O -0.370 6.370 27 H 0.074 0.926 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.226 0.774 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.816 29.223 -9.560 30.876 hybrid contribution -0.820 -0.890 1.510 1.935 sum -3.636 28.333 -8.050 29.678 Atomic orbital electron populations 1.22385 0.76774 1.04177 1.03246 1.47593 1.08550 1.04274 1.70891 1.17463 0.86035 0.82890 0.76045 1.90791 1.14099 1.87195 1.52459 1.19754 0.87742 0.94695 1.11310 1.27148 1.09231 0.96150 1.04006 1.82646 0.88771 1.04499 1.59387 1.27667 0.96244 0.94879 1.09765 1.98458 1.05951 1.92093 1.96583 1.66996 1.10544 1.23431 1.15515 1.21811 0.97779 0.82538 0.93815 0.88308 1.21609 0.98929 0.84146 0.94700 1.44622 1.82196 1.02637 1.05337 1.19928 1.38442 0.86016 1.00664 0.93449 1.27057 1.02311 0.90888 1.06062 1.71018 1.25117 1.35272 1.27802 0.83367 0.74823 0.74455 0.74650 1.18772 1.23041 1.20231 1.22824 0.99099 0.97769 0.85447 1.23148 0.95390 0.92169 0.85368 0.89183 1.86458 1.63170 1.65743 1.21635 0.92581 0.86538 0.91422 0.77354 0.93889 0.95628 0.93999 0.94165 0.91881 0.75012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.08 8.24 127.77 1.05 3.13 16 2 N -0.58 -18.89 2.89 -820.02 -2.37 -21.25 16 3 C 0.59 18.93 7.65 86.61 0.66 19.59 16 4 O -0.57 -21.37 16.10 -4.14 -0.07 -21.44 16 5 C 0.00 -0.01 6.50 40.52 0.26 0.25 16 6 C -0.22 -3.66 10.62 67.11 0.71 -2.95 16 7 S 0.39 3.64 22.96 -56.49 -1.30 2.35 16 8 C 0.02 0.27 7.98 130.69 1.04 1.31 16 9 Cl 0.04 0.55 29.33 -2.72 -0.08 0.48 16 10 N -0.45 -9.68 6.76 -183.80 -1.24 -10.93 16 11 C 0.15 5.42 3.08 46.18 0.14 5.57 16 12 H 0.10 4.08 7.00 -2.38 -0.02 4.06 16 13 C 0.13 5.69 6.88 86.73 0.60 6.28 16 14 N -0.62 -30.76 3.27 -691.54 -2.26 -33.03 16 15 C -0.32 -18.88 10.44 84.03 0.88 -18.00 16 16 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 17 C -0.07 -4.06 5.42 84.86 0.46 -3.60 16 18 N -0.95 -60.47 13.70 21.65 0.30 -60.17 16 19 Si 1.10 53.54 24.69 68.60 1.69 55.23 16 20 H -0.26 -11.31 6.60 99.48 0.66 -10.66 16 21 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 22 H -0.28 -12.90 6.24 99.48 0.62 -12.28 16 23 C 0.07 3.15 4.44 86.93 0.39 3.54 16 24 C 0.10 3.46 3.95 32.06 0.13 3.59 16 25 H 0.09 2.83 6.17 -2.39 -0.01 2.82 16 26 O -0.56 -17.15 13.47 -148.98 -2.01 -19.15 16 27 H 0.06 1.55 8.09 -2.38 -0.02 1.53 16 28 H 0.12 2.89 5.21 -2.39 -0.01 2.88 16 29 H 0.07 1.85 6.15 -2.38 -0.01 1.83 16 30 H 0.21 2.91 8.04 -2.91 -0.02 2.88 16 31 H 0.04 1.81 7.08 -2.39 -0.02 1.79 16 32 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.25 16.04 8.73 -92.71 -0.81 15.23 16 34 H 0.04 1.77 5.62 -2.38 -0.01 1.76 16 35 H 0.06 2.71 6.19 -2.39 -0.01 2.70 16 36 H 0.40 8.12 9.12 -74.06 -0.68 7.45 16 Total: -1.00 -76.61 321.91 -0.70 -77.30 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.31 Total: 11.90 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 6.32 Total: 18.71 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -5.57 Total: -125.37 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -2.07 Total: -40.59 kcal Atomic # 14 Polarization: 53.54 SS G_CDS: 1.69 Total: 55.23 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.30 Total: 2.35 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -0.08 Total: 0.48 kcal Total: -76.61 -0.70 -77.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047588868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.670 kcal (2) G-P(sol) polarization free energy of solvation -76.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds