Wall clock time and date at job start Tue Mar 31 2020 17:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00085 * 2 1 4 4 O 1.21709 * 120.00130 * 178.61734 * 3 2 1 5 5 C 1.46531 * 119.99874 * 358.61486 * 3 2 1 6 6 S 1.76216 * 126.17570 * 8.79839 * 5 3 2 7 7 C 1.70911 * 90.38676 * 179.97438 * 6 5 3 8 8 N 1.29360 * 110.62228 * 0.02562 * 7 6 5 9 9 C 1.31042 * 117.45584 * 359.74293 * 8 7 6 10 10 Cl 1.73599 * 123.05583 * 180.27464 * 9 8 7 11 11 C 1.46502 * 120.00144 * 179.97438 * 2 1 3 12 12 H 1.09007 * 110.88743 * 180.70477 * 11 2 1 13 13 C 1.54910 * 111.00637 * 304.58215 * 11 2 1 14 14 N 1.47422 * 104.83069 * 155.12113 * 13 11 2 15 15 C 1.36932 * 125.64725 * 155.84356 * 14 13 11 16 16 H 1.07998 * 120.00195 * 354.90497 * 15 14 13 17 17 C 1.38814 * 120.00453 * 174.91596 * 15 14 13 18 18 N 1.31622 * 119.99478 * 5.12906 * 17 15 14 19 19 Si 1.86795 * 120.00289 * 185.12916 * 17 15 14 20 20 H 1.48506 * 109.46984 * 94.99823 * 19 17 15 21 21 H 1.48502 * 109.47121 * 214.99431 * 19 17 15 22 22 H 1.48500 * 109.47271 * 334.99810 * 19 17 15 23 23 C 1.47026 * 108.70617 * 335.87153 * 14 13 11 24 24 C 1.54426 * 107.27794 * 1.06421 * 23 14 13 25 25 H 1.09007 * 110.72355 * 263.84501 * 24 23 14 26 26 O 1.42899 * 110.76267 * 140.54125 * 24 23 14 27 27 H 1.08997 * 109.47376 * 276.34018 * 1 2 3 28 28 H 1.09000 * 109.47481 * 36.34257 * 1 2 3 29 29 H 1.09010 * 109.47152 * 156.34098 * 1 2 3 30 30 H 1.08000 * 124.68798 * 180.02562 * 7 6 5 31 31 H 1.08999 * 110.36872 * 273.96137 * 13 11 2 32 32 H 1.09008 * 110.36344 * 36.28222 * 13 11 2 33 33 H 0.97001 * 119.99679 * 180.02562 * 18 17 15 34 34 H 1.09001 * 109.88190 * 120.47451 * 23 14 13 35 35 H 1.08996 * 109.88332 * 241.64425 * 23 14 13 36 36 H 0.96701 * 114.00101 * 66.50914 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3557 1.1674 0.0254 5 6 1.4065 2.4360 -0.0307 6 16 -0.3351 2.6363 0.1481 7 6 -0.1694 4.3290 -0.0211 8 7 1.0721 4.6506 -0.1903 9 6 1.9520 3.6796 -0.1985 10 17 3.6547 3.9465 -0.4073 11 6 2.1975 -1.2687 0.0006 12 1 3.2737 -1.0961 0.0130 13 6 1.7643 -2.1595 1.1916 14 7 2.0626 -3.5373 0.7604 15 6 2.2937 -4.6011 1.5910 16 1 2.3469 -4.4507 2.6592 17 6 2.4600 -5.8730 1.0603 18 7 2.4964 -6.0419 -0.2446 19 14 2.6320 -7.3446 2.1977 20 1 1.3042 -7.9824 2.3863 21 1 3.5719 -8.3261 1.5987 22 1 3.1567 -6.8955 3.5124 23 6 2.0715 -3.5800 -0.7092 24 6 1.7892 -2.1472 -1.2114 25 1 0.7310 -2.0203 -1.4405 26 8 2.5949 -1.8420 -2.3514 27 1 -0.3634 0.1135 1.0213 28 1 -0.3634 0.8278 -0.6090 29 1 -0.3634 -0.9414 -0.4124 30 1 -0.9881 5.0327 0.0091 31 1 2.3397 -1.9079 2.0825 32 1 0.6974 -2.0444 1.3830 33 1 2.6122 -6.9306 -0.6155 34 1 3.0472 -3.9116 -1.0645 35 1 1.2952 -4.2572 -1.0652 36 1 2.3797 -2.3641 -3.1364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047630234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:20 Heat of formation + Delta-G solvation = 12.014800 kcal Electronic energy + Delta-G solvation = -24121.635829 eV Core-core repulsion = 20374.812979 eV Total energy + Delta-G solvation = -3746.822849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.41494 -39.58099 -37.81840 -36.65537 -35.34900 -34.90173 -32.13403 -30.79600 -28.64741 -27.59972 -27.13242 -26.06604 -24.46519 -22.31845 -20.49884 -20.21416 -19.62104 -18.75345 -17.19661 -17.13637 -16.66514 -16.31360 -15.79279 -15.43536 -14.89638 -14.64329 -14.55359 -14.09945 -13.89357 -13.33162 -13.17457 -13.01492 -12.75395 -12.36412 -12.27304 -12.00165 -11.83088 -11.55374 -11.29505 -11.15277 -10.92703 -10.85629 -10.22010 -10.13108 -10.06883 -9.88102 -9.86008 -9.77487 -9.36328 -9.15519 -8.75874 -8.47909 -6.98220 -5.82548 -3.17632 -0.16281 0.62614 1.09835 1.93824 2.06898 2.82421 3.03508 3.35219 3.40971 3.43012 4.02739 4.38449 4.42951 4.59036 4.63895 4.77380 5.06465 5.19073 5.23331 5.37150 5.41728 5.50657 5.61963 5.77608 5.93952 6.01466 6.37851 6.47619 6.72144 7.03213 7.28956 7.31286 7.41511 7.68185 8.06991 8.12041 8.12799 9.08272 9.68477 10.31054 11.29050 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.003144 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.258956 B = 8904.423964 C = 9216.826749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.593 5.593 3 C 0.590 3.410 4 O -0.502 6.502 5 C -0.280 4.280 6 S 0.241 5.759 7 C 0.004 3.996 8 N -0.473 5.473 9 C 0.177 3.823 10 Cl 0.028 6.972 11 C 0.136 3.864 12 H 0.120 0.880 13 C 0.133 3.867 14 N -0.598 5.598 15 C -0.233 4.233 16 H 0.081 0.919 17 C -0.005 4.005 18 N -0.921 5.921 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.153 3.847 24 C 0.064 3.936 25 H 0.056 0.944 26 O -0.560 6.560 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.207 0.793 31 H 0.050 0.950 32 H 0.026 0.974 33 H 0.254 0.746 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.183 18.086 -1.945 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.325 5.325 3 C 0.375 3.625 4 O -0.377 6.377 5 C -0.406 4.406 6 S 0.496 5.504 7 C -0.290 4.290 8 N -0.188 5.188 9 C 0.012 3.988 10 Cl 0.056 6.944 11 C 0.032 3.968 12 H 0.138 0.862 13 C 0.005 3.995 14 N -0.326 5.326 15 C -0.361 4.361 16 H 0.099 0.901 17 C -0.201 4.201 18 N -0.568 5.568 19 Si 0.745 3.255 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.027 3.973 24 C 0.004 3.996 25 H 0.074 0.926 26 O -0.364 6.364 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.224 0.776 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.822 18.256 -1.455 20.782 hybrid contribution 0.597 -0.850 -0.065 1.041 sum -9.225 17.406 -1.521 19.758 Atomic orbital electron populations 1.22059 0.80515 1.03291 1.02467 1.47535 1.06415 1.05879 1.72672 1.16554 0.86774 0.81453 0.77676 1.90903 1.11958 1.86030 1.48842 1.25777 0.97419 0.98610 1.18760 1.84534 1.01539 1.01391 1.62908 1.29003 0.96668 1.02259 1.01058 1.65753 1.00921 1.35155 1.16936 1.21090 0.90351 0.86984 1.00368 1.98450 1.04531 1.96692 1.94681 1.22512 0.98583 0.80311 0.95376 0.86236 1.21769 0.97709 0.85576 0.94408 1.44233 1.83426 1.03269 1.01667 1.19078 1.42785 0.84892 0.89296 0.90082 1.24833 1.01640 0.97532 0.96109 1.69939 1.55929 1.21510 1.09380 0.86055 0.77451 0.82406 0.79578 1.21526 1.21650 1.20503 1.21872 1.01944 0.89256 0.84215 1.23594 0.92791 0.97401 0.85816 0.92583 1.86507 1.62367 1.65491 1.22050 0.91048 0.91491 0.88287 0.77595 0.93166 0.95600 0.93585 0.92388 0.92975 0.77866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 7.64 59.84 0.46 1.11 16 2 N -0.59 -8.95 2.91 -173.07 -0.50 -9.45 16 3 C 0.59 9.60 7.63 -12.92 -0.10 9.50 16 4 O -0.50 -9.89 14.60 5.18 0.08 -9.81 16 5 C -0.28 -3.69 6.28 -36.75 -0.23 -3.92 16 6 S 0.24 1.89 18.16 -107.50 -1.95 -0.06 16 7 C 0.00 0.03 12.20 51.72 0.63 0.66 16 8 N -0.47 -5.63 10.50 -12.22 -0.13 -5.76 16 9 C 0.18 2.44 7.41 -18.40 -0.14 2.31 16 10 Cl 0.03 0.41 27.43 -51.86 -1.42 -1.01 16 11 C 0.14 2.50 3.17 -65.78 -0.21 2.29 16 12 H 0.12 2.58 7.01 -51.93 -0.36 2.21 16 13 C 0.13 2.63 6.81 -2.53 -0.02 2.61 16 14 N -0.60 -14.66 3.39 -170.01 -0.58 -15.24 16 15 C -0.23 -6.27 10.27 -15.06 -0.15 -6.42 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 18 N -0.92 -26.06 10.34 55.49 0.57 -25.49 16 19 Si 0.91 21.50 29.56 -169.99 -5.02 16.48 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.15 3.52 5.15 -3.01 -0.02 3.50 16 24 C 0.06 1.18 3.87 -24.84 -0.10 1.08 16 25 H 0.06 0.89 6.27 -51.93 -0.33 0.57 16 26 O -0.56 -10.04 13.39 -35.23 -0.47 -10.51 16 27 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 28 H 0.07 0.58 4.51 -23.04 -0.10 0.48 16 29 H 0.10 1.03 6.27 -51.92 -0.33 0.71 16 30 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.03 0.47 7.14 -51.92 -0.37 0.10 16 33 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.06 1.53 7.45 -51.93 -0.39 1.14 16 35 H 0.05 1.29 7.37 -51.93 -0.38 0.91 16 36 H 0.37 5.11 9.12 45.56 0.42 5.53 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -34.04 322.88 -7.17 -41.22 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -2.64 Total: 2.27 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 0.04 Total: 12.51 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.63 Total: -55.93 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.40 Total: -20.32 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.95 Total: -0.06 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -1.42 Total: -1.01 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.04 -7.17 -41.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047630234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.231 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds