Wall clock time and date at job start Tue Mar 31 2020 17:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00085 * 2 1 4 4 O 1.21709 * 120.00130 * 178.61734 * 3 2 1 5 5 C 1.46531 * 119.99874 * 358.61486 * 3 2 1 6 6 S 1.76216 * 126.17570 * 8.79839 * 5 3 2 7 7 C 1.70911 * 90.38676 * 179.97438 * 6 5 3 8 8 N 1.29360 * 110.62228 * 0.02562 * 7 6 5 9 9 C 1.31042 * 117.45584 * 359.74293 * 8 7 6 10 10 Cl 1.73599 * 123.05583 * 180.27464 * 9 8 7 11 11 C 1.46502 * 120.00144 * 179.97438 * 2 1 3 12 12 H 1.09007 * 110.88743 * 180.70477 * 11 2 1 13 13 C 1.54910 * 111.00637 * 304.58215 * 11 2 1 14 14 N 1.47422 * 104.83069 * 155.12113 * 13 11 2 15 15 C 1.36932 * 125.64725 * 155.84356 * 14 13 11 16 16 H 1.07998 * 120.00195 * 354.90497 * 15 14 13 17 17 C 1.38814 * 120.00453 * 174.91596 * 15 14 13 18 18 N 1.31622 * 119.99478 * 5.12906 * 17 15 14 19 19 Si 1.86795 * 120.00289 * 185.12916 * 17 15 14 20 20 H 1.48506 * 109.46984 * 94.99823 * 19 17 15 21 21 H 1.48502 * 109.47121 * 214.99431 * 19 17 15 22 22 H 1.48500 * 109.47271 * 334.99810 * 19 17 15 23 23 C 1.47026 * 108.70617 * 335.87153 * 14 13 11 24 24 C 1.54426 * 107.27794 * 1.06421 * 23 14 13 25 25 H 1.09007 * 110.72355 * 263.84501 * 24 23 14 26 26 O 1.42899 * 110.76267 * 140.54125 * 24 23 14 27 27 H 1.08997 * 109.47376 * 276.34018 * 1 2 3 28 28 H 1.09000 * 109.47481 * 36.34257 * 1 2 3 29 29 H 1.09010 * 109.47152 * 156.34098 * 1 2 3 30 30 H 1.08000 * 124.68798 * 180.02562 * 7 6 5 31 31 H 1.08999 * 110.36872 * 273.96137 * 13 11 2 32 32 H 1.09008 * 110.36344 * 36.28222 * 13 11 2 33 33 H 0.97001 * 119.99679 * 180.02562 * 18 17 15 34 34 H 1.09001 * 109.88190 * 120.47451 * 23 14 13 35 35 H 1.08996 * 109.88332 * 241.64425 * 23 14 13 36 36 H 0.96701 * 114.00101 * 66.50914 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3557 1.1674 0.0254 5 6 1.4065 2.4360 -0.0307 6 16 -0.3351 2.6363 0.1481 7 6 -0.1694 4.3290 -0.0211 8 7 1.0721 4.6506 -0.1903 9 6 1.9520 3.6796 -0.1985 10 17 3.6547 3.9465 -0.4073 11 6 2.1975 -1.2687 0.0006 12 1 3.2737 -1.0961 0.0130 13 6 1.7643 -2.1595 1.1916 14 7 2.0626 -3.5373 0.7604 15 6 2.2937 -4.6011 1.5910 16 1 2.3469 -4.4507 2.6592 17 6 2.4600 -5.8730 1.0603 18 7 2.4964 -6.0419 -0.2446 19 14 2.6320 -7.3446 2.1977 20 1 1.3042 -7.9824 2.3863 21 1 3.5719 -8.3261 1.5987 22 1 3.1567 -6.8955 3.5124 23 6 2.0715 -3.5800 -0.7092 24 6 1.7892 -2.1472 -1.2114 25 1 0.7310 -2.0203 -1.4405 26 8 2.5949 -1.8420 -2.3514 27 1 -0.3634 0.1135 1.0213 28 1 -0.3634 0.8278 -0.6090 29 1 -0.3634 -0.9414 -0.4124 30 1 -0.9881 5.0327 0.0091 31 1 2.3397 -1.9079 2.0825 32 1 0.6974 -2.0444 1.3830 33 1 2.6122 -6.9306 -0.6155 34 1 3.0472 -3.9116 -1.0645 35 1 1.2952 -4.2572 -1.0652 36 1 2.3797 -2.3641 -3.1364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047630234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:19 Heat of formation + Delta-G solvation = -15.684620 kcal Electronic energy + Delta-G solvation = -24122.836966 eV Core-core repulsion = 20374.812979 eV Total energy + Delta-G solvation = -3748.023986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.52785 -40.63648 -39.28763 -37.65584 -36.74746 -36.45659 -33.94188 -31.92557 -30.25375 -29.07869 -28.22604 -27.13237 -26.16228 -23.50226 -22.29016 -21.36306 -20.69389 -19.81199 -19.02192 -18.43987 -17.78126 -17.60889 -16.89998 -16.85675 -16.23151 -15.78184 -15.63537 -15.60459 -15.15153 -14.63609 -14.50928 -14.31609 -14.15912 -13.93877 -13.68641 -13.17107 -13.07760 -12.99622 -12.80745 -12.73912 -12.65786 -12.15746 -12.06019 -11.88789 -11.60233 -11.23469 -10.96319 -10.76204 -10.74499 -10.60466 -10.08551 -9.64531 -8.95109 -7.88139 -5.25311 -0.99388 -0.19032 0.38626 1.02853 1.20362 1.47901 1.49362 1.58044 1.65205 1.90741 2.48689 3.08622 3.22541 3.34030 3.55278 3.66597 3.71620 3.81041 3.92294 4.02699 4.14240 4.41992 4.43024 4.45952 4.56866 4.70488 4.80802 4.98863 5.34304 5.42462 5.42596 5.66615 6.11509 6.13743 6.29752 6.84913 6.90200 7.04816 7.69841 8.32221 9.21765 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.003144 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.258956 B = 8904.423964 C = 9216.826749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.591 5.591 3 C 0.585 3.415 4 O -0.551 6.551 5 C -0.322 4.322 6 S 0.336 5.664 7 C 0.020 3.980 8 N -0.504 5.504 9 C 0.170 3.830 10 Cl 0.000 7.000 11 C 0.148 3.852 12 H 0.080 0.920 13 C 0.135 3.865 14 N -0.620 5.620 15 C -0.246 4.246 16 H 0.085 0.915 17 C -0.060 4.060 18 N -0.948 5.948 19 Si 0.979 3.021 20 H -0.282 1.282 21 H -0.297 1.297 22 H -0.270 1.270 23 C 0.164 3.836 24 C 0.084 3.916 25 H 0.093 0.907 26 O -0.572 6.572 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.255 0.745 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.249 0.751 34 H 0.012 0.988 35 H 0.031 0.969 36 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.786 19.529 -1.297 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.322 5.322 3 C 0.373 3.627 4 O -0.430 6.430 5 C -0.448 4.448 6 S 0.593 5.407 7 C -0.272 4.272 8 N -0.220 5.220 9 C 0.003 3.997 10 Cl 0.029 6.971 11 C 0.043 3.957 12 H 0.098 0.902 13 C 0.009 3.991 14 N -0.348 5.348 15 C -0.375 4.375 16 H 0.103 0.897 17 C -0.253 4.253 18 N -0.596 5.596 19 Si 0.807 3.193 20 H -0.208 1.208 21 H -0.224 1.224 22 H -0.195 1.195 23 C 0.038 3.962 24 C 0.023 3.977 25 H 0.111 0.889 26 O -0.380 6.380 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.270 0.730 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.049 0.951 36 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -13.499 19.725 -0.802 23.915 hybrid contribution 1.594 -1.206 -0.258 2.015 sum -11.905 18.519 -1.060 22.041 Atomic orbital electron populations 1.22445 0.77419 1.04803 1.04689 1.47483 1.08158 1.04217 1.72346 1.16983 0.86507 0.82564 0.76666 1.90869 1.14308 1.86904 1.50964 1.25585 1.01276 0.96717 1.21220 1.84025 0.95819 1.00299 1.60542 1.29856 0.96332 1.03648 0.97371 1.65801 1.02119 1.34959 1.19134 1.21188 0.89773 0.87834 1.00894 1.98431 1.07030 1.96816 1.94845 1.21978 0.97019 0.81831 0.94884 0.90158 1.21886 0.99148 0.83499 0.94547 1.44492 1.83486 1.04648 1.02185 1.19455 1.42087 0.85935 0.89987 0.89685 1.25643 1.02055 1.00108 0.97503 1.70145 1.57108 1.21485 1.10882 0.85051 0.77272 0.78893 0.78035 1.20840 1.22413 1.19464 1.21618 0.98724 0.92027 0.83854 1.23385 0.94594 0.93905 0.85811 0.88898 1.86482 1.62925 1.65815 1.22753 0.88515 0.89330 0.87485 0.72962 0.93960 0.92372 0.94219 0.96930 0.95075 0.75714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.85 7.64 127.77 0.98 1.82 16 2 N -0.59 -16.91 2.91 -819.69 -2.38 -19.30 16 3 C 0.59 18.82 7.63 86.40 0.66 19.47 16 4 O -0.55 -22.65 14.60 -4.38 -0.06 -22.72 16 5 C -0.32 -7.91 6.28 24.10 0.15 -7.76 16 6 S 0.34 3.68 18.16 -56.49 -1.03 2.65 16 7 C 0.02 0.22 12.20 130.61 1.59 1.82 16 8 N -0.50 -10.77 10.50 -192.58 -2.02 -12.79 16 9 C 0.17 4.52 7.41 84.48 0.63 5.15 16 10 Cl 0.00 0.01 27.43 -2.72 -0.07 -0.07 16 11 C 0.15 5.45 3.17 46.38 0.15 5.60 16 12 H 0.08 3.63 7.01 -2.38 -0.02 3.62 16 13 C 0.14 5.29 6.81 86.86 0.59 5.88 16 14 N -0.62 -30.79 3.39 -691.78 -2.35 -33.14 16 15 C -0.25 -13.41 10.27 84.03 0.86 -12.55 16 16 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 17 C -0.06 -3.30 5.48 84.86 0.47 -2.83 16 18 N -0.95 -55.23 10.34 21.65 0.22 -55.00 16 19 Si 0.98 44.62 29.56 68.60 2.03 46.64 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 C 0.16 7.74 5.15 86.76 0.45 8.19 16 24 C 0.08 3.00 3.87 31.82 0.12 3.13 16 25 H 0.09 2.70 6.27 -2.38 -0.01 2.68 16 26 O -0.57 -20.51 13.39 -148.98 -2.00 -22.50 16 27 H 0.10 1.22 7.87 -2.39 -0.02 1.20 16 28 H 0.09 1.10 4.51 -20.76 -0.09 1.01 16 29 H 0.11 1.73 6.27 -2.38 -0.01 1.72 16 30 H 0.25 0.18 8.06 -2.91 -0.02 0.15 16 31 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.94 7.14 -2.38 -0.02 1.92 16 33 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.01 0.69 7.45 -2.39 -0.02 0.68 16 35 H 0.03 1.58 7.37 -2.39 -0.02 1.56 16 36 H 0.39 10.54 9.12 -74.06 -0.68 9.87 16 Total: -1.00 -79.69 322.88 -0.62 -80.31 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.40 Total: 7.99 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 6.64 Total: 27.92 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -6.53 Total: -120.23 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -2.06 Total: -45.22 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.03 Total: 2.65 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.07 Total: -0.07 kcal Total: -79.69 -0.62 -80.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047630234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.626 kcal (2) G-P(sol) polarization free energy of solvation -79.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds