Wall clock time and date at job start Tue Mar 31 2020 16:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99987 * 2 1 4 4 H 1.48502 * 109.46961 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46932 * 120.00065 * 3 2 1 6 6 H 1.48503 * 109.47235 * 240.00223 * 3 2 1 7 7 C 1.38810 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00069 * 191.84006 * 7 2 1 9 9 N 1.36934 * 120.00087 * 11.83545 * 7 2 1 10 10 C 1.47156 * 120.97909 * 30.73971 * 9 7 2 11 11 C 1.53711 * 108.15747 * 129.43335 * 10 9 7 12 12 O 1.42963 * 109.15047 * 52.53733 * 11 10 9 13 13 C 1.42957 * 114.16400 * 297.28580 * 12 11 10 14 14 C 1.47152 * 120.98339 * 211.02468 * 9 7 2 15 15 H 1.08998 * 109.68448 * 110.75106 * 14 9 7 16 16 C 1.52997 * 109.67974 * 350.23217 * 14 9 7 17 17 N 1.46501 * 109.46971 * 60.43026 * 16 14 9 18 18 C 1.34783 * 119.99866 * 179.97438 * 17 16 14 19 19 O 1.21633 * 120.00094 * 359.97438 * 18 17 16 20 20 C 1.47153 * 119.99748 * 180.02562 * 18 17 16 21 21 N 1.30564 * 125.52640 * 359.69212 * 20 18 17 22 22 C 1.30668 * 115.92771 * 179.77938 * 21 20 18 23 23 C 1.34441 * 115.73952 * 0.52229 * 22 21 20 24 24 Cl 1.73596 * 125.46400 * 179.74770 * 23 22 21 25 25 S 1.71074 * 109.07235 * 359.71903 * 23 22 21 26 26 H 0.97007 * 119.99875 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.67869 * 249.20678 * 10 9 7 28 28 H 1.08997 * 109.68107 * 9.76467 * 10 9 7 29 29 H 1.09000 * 109.65928 * 292.56919 * 11 10 9 30 30 H 1.08999 * 109.44549 * 172.37383 * 11 10 9 31 31 H 1.08993 * 109.51499 * 302.65766 * 13 12 11 32 32 H 1.09002 * 109.51238 * 182.50200 * 13 12 11 33 33 H 1.09003 * 109.46878 * 180.42530 * 16 14 9 34 34 H 1.08997 * 109.47745 * 300.43087 * 16 14 9 35 35 H 0.97000 * 120.00056 * 359.97438 * 17 16 14 36 36 H 1.08000 * 122.13244 * 180.26292 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0730 -1.2122 0.1914 9 7 1.3474 -2.3753 -0.2443 10 6 0.1662 -2.4098 -1.1212 11 6 0.3713 -3.5266 -2.1573 12 8 0.6931 -4.7429 -1.4784 13 6 1.9142 -4.6936 -0.7367 14 6 1.7916 -3.6376 0.3679 15 1 1.0613 -3.9634 1.1085 16 6 3.1511 -3.4342 1.0395 17 7 3.0321 -2.4133 2.0835 18 6 4.1109 -2.0670 2.8135 19 8 5.1831 -2.6025 2.6058 20 6 3.9912 -1.0420 3.8625 21 7 2.8989 -0.3974 4.1723 22 6 3.0044 0.4730 5.1411 23 6 4.2281 0.5972 5.6837 24 17 4.6526 1.6773 6.9747 25 16 5.2998 -0.4805 4.8984 26 1 -0.4850 0.8401 0.0004 27 1 -0.7252 -2.6145 -0.5283 28 1 0.0580 -1.4516 -1.6291 29 1 1.1864 -3.2581 -2.8294 30 1 -0.5453 -3.6618 -2.7314 31 1 2.7349 -4.4293 -1.4035 32 1 2.1076 -5.6682 -0.2885 33 1 3.4802 -4.3729 1.4852 34 1 3.8790 -3.1101 0.2958 35 1 2.1769 -1.9866 2.2493 36 1 2.1631 1.0586 5.4814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051026282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:56 Heat of formation + Delta-G solvation = -1.922679 kcal Electronic energy + Delta-G solvation = -24294.775103 eV Core-core repulsion = 20547.347880 eV Total energy + Delta-G solvation = -3747.427224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 4.51 seconds Orbital eigenvalues (eV) -40.10355 -39.06210 -38.25382 -37.05919 -35.41794 -33.66039 -31.76945 -30.63428 -30.06019 -27.29318 -26.62450 -25.05299 -23.46449 -22.25282 -21.51355 -19.83686 -19.61247 -18.68822 -17.30884 -16.54596 -16.01534 -15.84605 -15.32061 -15.19043 -15.02519 -14.59720 -14.26868 -14.02032 -13.88262 -13.71203 -13.48629 -12.97660 -12.68449 -12.39672 -12.29346 -11.90890 -11.59231 -11.10476 -11.06712 -10.87567 -10.81079 -10.45880 -10.30863 -10.25832 -10.07245 -9.79830 -9.66437 -9.54958 -9.04489 -8.99114 -8.70153 -8.39067 -6.75034 -5.92065 -3.40864 0.05736 0.62148 1.40679 1.88847 2.31289 3.29099 3.35096 3.37008 3.37547 3.54254 4.25514 4.35332 4.51522 4.89281 5.09302 5.17712 5.27295 5.51842 5.68565 5.79359 5.84668 5.97142 6.01008 6.11619 6.16775 6.29914 6.49084 6.68503 6.85960 7.04889 7.35493 7.47382 7.67358 7.84251 7.98220 8.27054 8.50496 9.03803 9.64605 10.23199 11.14514 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.004101 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.115229 B = 6825.319449 C = 7986.329215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.018 3.982 3 Si 0.895 3.105 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.071 0.929 9 N -0.591 5.591 10 C 0.145 3.855 11 C 0.034 3.966 12 O -0.392 6.392 13 C 0.057 3.943 14 C 0.124 3.876 15 H 0.043 0.957 16 C 0.133 3.867 17 N -0.659 5.659 18 C 0.586 3.414 19 O -0.549 6.549 20 C 0.010 3.990 21 N -0.403 5.403 22 C 0.053 3.947 23 C -0.226 4.226 24 Cl 0.005 6.995 25 S 0.271 5.729 26 H 0.256 0.744 27 H 0.030 0.970 28 H 0.092 0.908 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.428 0.572 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.289 -1.603 8.730 10.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.182 4.182 3 Si 0.725 3.275 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.389 4.389 8 H 0.089 0.911 9 N -0.317 5.317 10 C 0.020 3.980 11 C -0.044 4.044 12 O -0.310 6.310 13 C -0.022 4.022 14 C 0.017 3.983 15 H 0.061 0.939 16 C 0.009 3.991 17 N -0.310 5.310 18 C 0.366 3.634 19 O -0.428 6.428 20 C -0.266 4.266 21 N -0.120 5.120 22 C -0.106 4.106 23 C -0.375 4.375 24 Cl 0.034 6.966 25 S 0.526 5.474 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.269 0.731 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.411 -2.285 8.452 11.471 hybrid contribution -0.697 2.354 0.575 2.521 sum 6.714 0.069 9.027 11.250 Atomic orbital electron populations 1.69966 1.05174 1.25852 1.52800 1.25073 0.95210 0.98128 0.99830 0.86484 0.79116 0.83669 0.78273 1.21470 1.20733 1.20967 1.19104 0.91388 0.83448 1.44996 0.91149 1.44096 1.32999 1.02544 1.52083 1.21495 0.88932 0.96952 0.90665 1.23435 0.99192 0.86340 0.95389 1.87803 1.41159 1.35640 1.66429 1.22851 0.86990 0.98652 0.93733 1.21448 0.93529 0.89548 0.93812 0.93916 1.21340 0.98276 0.89961 0.89510 1.45892 1.12742 1.39324 1.33080 1.16620 0.85111 0.81072 0.80558 1.90817 1.27277 1.55118 1.69599 1.27920 0.91818 1.03537 1.03300 1.67024 1.26855 1.05838 1.12260 1.21883 0.96700 0.98467 0.93581 1.26660 1.00496 1.06547 1.03847 1.98370 1.92676 1.60704 1.44896 1.84043 1.10534 1.27717 1.25128 0.93342 0.95163 0.88992 0.94042 0.90253 0.93411 0.89833 0.91568 0.90815 0.73149 0.79869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.08 11.17 55.49 0.62 -23.46 16 2 C 0.02 0.47 5.04 -17.43 -0.09 0.38 16 3 Si 0.90 21.14 29.57 -169.99 -5.03 16.11 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.26 -6.39 7.05 -15.06 -0.11 -6.50 16 8 H 0.07 1.76 5.80 -52.49 -0.30 1.45 16 9 N -0.59 -13.41 3.03 -164.05 -0.50 -13.90 16 10 C 0.14 3.24 5.41 -3.31 -0.02 3.22 16 11 C 0.03 0.65 7.00 37.53 0.26 0.91 16 12 O -0.39 -7.42 10.74 -35.23 -0.38 -7.80 16 13 C 0.06 0.97 6.29 37.31 0.23 1.20 16 14 C 0.12 2.35 3.21 -67.42 -0.22 2.14 16 15 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 16 C 0.13 2.37 4.45 -4.04 -0.02 2.35 16 17 N -0.66 -12.56 3.76 -61.47 -0.23 -12.79 16 18 C 0.59 10.97 7.80 -12.64 -0.10 10.88 16 19 O -0.55 -10.91 16.94 5.25 0.09 -10.82 16 20 C 0.01 0.17 7.45 -14.47 -0.11 0.06 16 21 N -0.40 -6.99 10.24 -11.49 -0.12 -7.11 16 22 C 0.05 0.77 11.21 -19.39 -0.22 0.55 16 23 C -0.23 -2.92 6.95 29.39 0.20 -2.71 16 24 Cl 0.01 0.06 29.30 -51.86 -1.52 -1.46 16 25 S 0.27 3.66 23.03 -107.50 -2.48 1.19 16 26 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.27 6.33 -51.93 -0.33 1.94 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 35 H 0.43 8.88 6.95 -40.82 -0.28 8.60 16 36 H 0.18 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -28.21 330.95 -8.54 -36.75 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.83 Total: 5.83 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -0.17 Total: 12.47 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.23 Total: -57.26 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.29 Total: -18.62 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -2.48 Total: 1.19 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.52 Total: -1.46 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.21 -8.54 -36.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051026282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.828 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds