Wall clock time and date at job start Tue Mar 31 2020 16:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99987 * 2 1 4 4 H 1.48502 * 109.46961 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46932 * 120.00065 * 3 2 1 6 6 H 1.48503 * 109.47235 * 240.00223 * 3 2 1 7 7 C 1.38810 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00069 * 191.84006 * 7 2 1 9 9 N 1.36934 * 120.00087 * 11.83545 * 7 2 1 10 10 C 1.47156 * 120.97909 * 30.73971 * 9 7 2 11 11 C 1.53711 * 108.15747 * 129.43335 * 10 9 7 12 12 O 1.42963 * 109.15047 * 52.53733 * 11 10 9 13 13 C 1.42957 * 114.16400 * 297.28580 * 12 11 10 14 14 C 1.47152 * 120.98339 * 211.02468 * 9 7 2 15 15 H 1.08998 * 109.68448 * 110.75106 * 14 9 7 16 16 C 1.52997 * 109.67974 * 350.23217 * 14 9 7 17 17 N 1.46501 * 109.46971 * 60.43026 * 16 14 9 18 18 C 1.34783 * 119.99866 * 179.97438 * 17 16 14 19 19 O 1.21633 * 120.00094 * 359.97438 * 18 17 16 20 20 C 1.47153 * 119.99748 * 180.02562 * 18 17 16 21 21 N 1.30564 * 125.52640 * 359.69212 * 20 18 17 22 22 C 1.30668 * 115.92771 * 179.77938 * 21 20 18 23 23 C 1.34441 * 115.73952 * 0.52229 * 22 21 20 24 24 Cl 1.73596 * 125.46400 * 179.74770 * 23 22 21 25 25 S 1.71074 * 109.07235 * 359.71903 * 23 22 21 26 26 H 0.97007 * 119.99875 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.67869 * 249.20678 * 10 9 7 28 28 H 1.08997 * 109.68107 * 9.76467 * 10 9 7 29 29 H 1.09000 * 109.65928 * 292.56919 * 11 10 9 30 30 H 1.08999 * 109.44549 * 172.37383 * 11 10 9 31 31 H 1.08993 * 109.51499 * 302.65766 * 13 12 11 32 32 H 1.09002 * 109.51238 * 182.50200 * 13 12 11 33 33 H 1.09003 * 109.46878 * 180.42530 * 16 14 9 34 34 H 1.08997 * 109.47745 * 300.43087 * 16 14 9 35 35 H 0.97000 * 120.00056 * 359.97438 * 17 16 14 36 36 H 1.08000 * 122.13244 * 180.26292 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0730 -1.2122 0.1914 9 7 1.3474 -2.3753 -0.2443 10 6 0.1662 -2.4098 -1.1212 11 6 0.3713 -3.5266 -2.1573 12 8 0.6931 -4.7429 -1.4784 13 6 1.9142 -4.6936 -0.7367 14 6 1.7916 -3.6376 0.3679 15 1 1.0613 -3.9634 1.1085 16 6 3.1511 -3.4342 1.0395 17 7 3.0321 -2.4133 2.0835 18 6 4.1109 -2.0670 2.8135 19 8 5.1831 -2.6025 2.6058 20 6 3.9912 -1.0420 3.8625 21 7 2.8989 -0.3974 4.1723 22 6 3.0044 0.4730 5.1411 23 6 4.2281 0.5972 5.6837 24 17 4.6526 1.6773 6.9747 25 16 5.2998 -0.4805 4.8984 26 1 -0.4850 0.8401 0.0004 27 1 -0.7252 -2.6145 -0.5283 28 1 0.0580 -1.4516 -1.6291 29 1 1.1864 -3.2581 -2.8294 30 1 -0.5453 -3.6618 -2.7314 31 1 2.7349 -4.4293 -1.4035 32 1 2.1076 -5.6682 -0.2885 33 1 3.4802 -4.3729 1.4852 34 1 3.8790 -3.1101 0.2958 35 1 2.1769 -1.9866 2.2493 36 1 2.1631 1.0586 5.4814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051026282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:54 Heat of formation + Delta-G solvation = -21.055471 kcal Electronic energy + Delta-G solvation = -24295.604764 eV Core-core repulsion = 20547.347880 eV Total energy + Delta-G solvation = -3748.256884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38868 -40.46145 -39.74352 -38.04887 -36.98164 -35.35018 -33.39002 -32.26703 -31.33658 -29.00196 -27.96596 -26.44039 -25.21249 -23.66898 -22.92455 -21.42332 -20.98464 -19.93031 -18.77142 -18.09925 -17.62735 -17.31430 -16.60510 -16.51001 -16.45245 -16.23183 -15.89610 -15.41310 -15.19668 -15.13583 -15.03233 -14.66812 -14.29525 -13.61239 -13.43261 -13.26501 -13.09559 -12.89675 -12.71999 -12.51760 -12.18267 -12.11570 -12.00132 -11.84414 -11.65795 -11.27923 -11.03912 -10.65646 -10.64083 -10.54524 -10.19974 -9.87023 -8.60897 -7.86971 -5.36135 -1.12295 -0.48876 0.27841 0.83293 1.09268 1.39339 1.42238 1.45722 2.01218 2.20198 2.44951 2.99368 3.08662 3.31078 3.46137 3.74213 3.96191 4.01439 4.24024 4.34772 4.49646 4.58866 4.64912 4.68287 4.72686 4.77546 5.03015 5.12394 5.31042 5.38937 5.64563 5.68883 6.17195 6.31846 6.38540 6.51539 7.01604 7.11963 7.77818 8.33383 9.17506 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.004101 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.115229 B = 6825.319449 C = 7986.329215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 0.938 3.062 4 H -0.294 1.294 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.242 4.242 8 H 0.068 0.932 9 N -0.606 5.606 10 C 0.150 3.850 11 C 0.047 3.953 12 O -0.397 6.397 13 C 0.059 3.941 14 C 0.124 3.876 15 H 0.036 0.964 16 C 0.137 3.863 17 N -0.668 5.668 18 C 0.587 3.413 19 O -0.565 6.565 20 C -0.035 4.035 21 N -0.428 5.428 22 C 0.037 3.963 23 C -0.214 4.214 24 Cl 0.033 6.967 25 S 0.329 5.671 26 H 0.249 0.751 27 H 0.006 0.994 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.419 0.581 36 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.726 -2.129 9.571 12.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.222 4.222 3 Si 0.768 3.232 4 H -0.221 1.221 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.372 4.372 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.024 3.976 11 C -0.031 4.031 12 O -0.316 6.316 13 C -0.020 4.020 14 C 0.017 3.983 15 H 0.054 0.946 16 C 0.014 3.986 17 N -0.318 5.318 18 C 0.369 3.631 19 O -0.446 6.446 20 C -0.308 4.308 21 N -0.146 5.146 22 C -0.122 4.122 23 C -0.364 4.364 24 Cl 0.061 6.939 25 S 0.583 5.417 26 H 0.059 0.941 27 H 0.024 0.976 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.257 0.743 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 8.874 -2.843 9.283 13.153 hybrid contribution -1.047 2.534 0.473 2.782 sum 7.827 -0.309 9.756 12.512 Atomic orbital electron populations 1.70081 1.06029 1.25555 1.55150 1.25508 0.95625 1.00042 1.01021 0.85795 0.77982 0.81571 0.77817 1.22058 1.21061 1.21019 1.19162 0.91197 0.84146 1.42653 0.91480 1.44316 1.32794 1.03363 1.52718 1.21320 0.88102 0.97117 0.91046 1.23277 1.00558 0.85037 0.94211 1.87806 1.42068 1.35171 1.66527 1.22990 0.86419 0.99650 0.92908 1.21600 0.93820 0.88426 0.94423 0.94621 1.21363 0.97121 0.90938 0.89227 1.45931 1.12483 1.39734 1.33604 1.16807 0.84576 0.81089 0.80627 1.90787 1.27566 1.55928 1.70340 1.27639 0.93592 1.04767 1.04832 1.66983 1.27802 1.06513 1.13280 1.22147 0.97949 0.98628 0.93504 1.26835 1.00058 1.05936 1.03569 1.98390 1.92397 1.59647 1.43441 1.83795 1.08454 1.26351 1.23051 0.94138 0.97632 0.91674 0.93623 0.87881 0.92885 0.86162 0.88797 0.91899 0.74282 0.78107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.13 11.17 21.65 0.24 -50.89 16 2 C -0.02 -1.30 5.04 84.86 0.43 -0.87 16 3 Si 0.94 44.11 29.57 68.60 2.03 46.13 16 4 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 5 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 7 C -0.24 -11.99 7.05 84.03 0.59 -11.40 16 8 H 0.07 3.37 5.80 -2.91 -0.02 3.35 16 9 N -0.61 -27.59 3.03 -672.92 -2.04 -29.63 16 10 C 0.15 6.78 5.41 86.49 0.47 7.25 16 11 C 0.05 1.71 7.00 72.22 0.51 2.22 16 12 O -0.40 -14.19 10.74 -148.98 -1.60 -15.79 16 13 C 0.06 1.86 6.29 72.08 0.45 2.31 16 14 C 0.12 4.59 3.21 44.97 0.14 4.73 16 15 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 16 C 0.14 4.74 4.45 86.38 0.38 5.13 16 17 N -0.67 -25.46 3.76 -466.63 -1.75 -27.21 16 18 C 0.59 21.86 7.80 86.58 0.68 22.54 16 19 O -0.57 -22.09 16.94 -4.14 -0.07 -22.16 16 20 C -0.03 -1.18 7.45 87.22 0.65 -0.53 16 21 N -0.43 -14.75 10.24 -190.28 -1.95 -16.70 16 22 C 0.04 1.03 11.21 84.00 0.94 1.97 16 23 C -0.21 -5.09 6.95 66.95 0.47 -4.63 16 24 Cl 0.03 0.61 29.30 -2.72 -0.08 0.54 16 25 S 0.33 8.30 23.03 -56.49 -1.30 7.00 16 26 H 0.25 13.69 8.31 -92.70 -0.77 12.92 16 27 H 0.01 0.27 8.14 -2.39 -0.02 0.26 16 28 H 0.06 3.30 6.33 -2.39 -0.02 3.28 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 35 H 0.42 17.71 6.95 -92.71 -0.64 17.06 16 36 H 0.20 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -60.90 330.95 -0.31 -61.22 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.50 Total: 18.77 kcal Atomic # 6 Polarization: 23.00 SS G_CDS: 5.71 Total: 28.71 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -5.49 Total: -124.43 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -1.67 Total: -37.94 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 8.30 SS G_CDS: -1.30 Total: 7.00 kcal Atomic # 17 Polarization: 0.61 SS G_CDS: -0.08 Total: 0.54 kcal Total: -60.90 -0.31 -61.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051026282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.162 kcal (2) G-P(sol) polarization free energy of solvation -60.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds