Wall clock time and date at job start Tue Mar 31 2020 16:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99918 * 2 1 4 4 H 1.48511 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47054 * 299.99801 * 3 2 1 6 6 H 1.48504 * 109.47385 * 60.00026 * 3 2 1 7 7 C 1.38813 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00419 * 169.22430 * 7 2 1 9 9 N 1.36941 * 119.99640 * 349.22763 * 7 2 1 10 10 C 1.47161 * 120.99172 * 328.38681 * 9 7 2 11 11 C 1.53300 * 108.41372 * 230.54677 * 10 9 7 12 12 O 1.42958 * 109.22087 * 307.71989 * 11 10 9 13 13 C 1.42958 * 114.16859 * 62.58202 * 12 11 10 14 14 C 1.47148 * 120.97933 * 148.46540 * 9 7 2 15 15 H 1.09000 * 109.68159 * 249.18938 * 14 9 7 16 16 C 1.52993 * 109.68633 * 9.71160 * 14 9 7 17 17 N 1.46500 * 109.47015 * 298.64977 * 16 14 9 18 18 C 1.34776 * 120.00377 * 180.02562 * 17 16 14 19 19 O 1.21639 * 119.99612 * 359.97438 * 18 17 16 20 20 C 1.47143 * 120.00276 * 180.02562 * 18 17 16 21 21 N 1.30560 * 125.52952 * 359.97134 * 20 18 17 22 22 C 1.30666 * 115.93436 * 180.02562 * 21 20 18 23 23 C 1.34437 * 115.73843 * 0.02562 * 22 21 20 24 24 Cl 1.73604 * 125.46068 * 179.97438 * 23 22 21 25 25 S 1.71068 * 109.07274 * 359.97438 * 23 22 21 26 26 H 0.97003 * 119.99750 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.65442 * 110.82337 * 10 9 7 28 28 H 1.09004 * 109.68782 * 350.28556 * 10 9 7 29 29 H 1.08999 * 109.51097 * 187.79557 * 11 10 9 30 30 H 1.08997 * 109.51088 * 67.64379 * 11 10 9 31 31 H 1.09001 * 109.51364 * 177.49224 * 13 12 11 32 32 H 1.09000 * 109.55842 * 57.36249 * 13 12 11 33 33 H 1.09003 * 109.47546 * 178.64981 * 16 14 9 34 34 H 1.09002 * 109.47388 * 58.64730 * 16 14 9 35 35 H 0.97000 * 119.99788 * 359.97438 * 17 16 14 36 36 H 1.08002 * 122.13156 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0760 -1.2105 -0.1743 9 7 1.3437 -2.3775 0.2227 10 6 0.1597 -2.4239 1.0954 11 6 0.3521 -3.5542 2.1130 12 8 0.6774 -4.7613 1.4196 13 6 1.9041 -4.7035 0.6878 14 6 1.7912 -3.6320 -0.4028 15 1 1.0662 -3.9470 -1.1532 16 6 3.1560 -3.4213 -1.0613 17 7 3.0413 -2.4022 -2.1075 18 6 4.1250 -2.0503 -2.8273 19 8 5.1985 -2.5786 -2.6080 20 6 4.0099 -1.0263 -3.8777 21 7 2.9158 -0.3920 -4.2023 22 6 3.0270 0.4825 -5.1668 23 6 4.2551 0.6127 -5.6980 24 17 4.6858 1.6944 -6.9858 25 16 5.3252 -0.4582 -4.9015 26 1 -0.4850 0.8401 0.0004 27 1 -0.7301 -2.6169 0.4962 28 1 0.0516 -1.4736 1.6185 29 1 -0.5691 -3.6959 2.6781 30 1 1.1624 -3.2963 2.7948 31 1 2.0996 -5.6721 0.2277 32 1 2.7207 -4.4502 1.3638 33 1 3.4951 -4.3585 -1.5027 34 1 3.8747 -3.0922 -0.3108 35 1 2.1851 -1.9812 -2.2826 36 1 2.1857 1.0630 -5.5156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051026283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:03 Heat of formation + Delta-G solvation = -22.091500 kcal Electronic energy + Delta-G solvation = -24280.640722 eV Core-core repulsion = 20532.338913 eV Total energy + Delta-G solvation = -3748.301809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39029 -40.46387 -39.75213 -38.04764 -36.97603 -35.36169 -33.39193 -32.28740 -31.34406 -29.01339 -27.96915 -26.44715 -25.22323 -23.66657 -22.92103 -21.43032 -20.98190 -19.93121 -18.77059 -18.10788 -17.63155 -17.31824 -16.61361 -16.51538 -16.45793 -16.23248 -15.89186 -15.41306 -15.20284 -15.13728 -15.03848 -14.67926 -14.29241 -13.61751 -13.43075 -13.26083 -13.09967 -12.91746 -12.76015 -12.50571 -12.14242 -12.11399 -11.99872 -11.85910 -11.65929 -11.27900 -11.04191 -10.65742 -10.64245 -10.55683 -10.20456 -9.87827 -8.60511 -7.87656 -5.37617 -1.12539 -0.49062 0.27862 0.83329 1.08959 1.36231 1.41846 1.46834 2.00762 2.20024 2.43880 2.98985 3.08297 3.30695 3.45696 3.73889 3.96004 4.01333 4.23909 4.34615 4.49871 4.58867 4.65445 4.68079 4.72640 4.77508 5.02869 5.12321 5.30668 5.38866 5.64496 5.68981 6.16777 6.31950 6.38507 6.51123 7.01371 7.11813 7.77212 8.33044 9.17218 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.004089 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.346645 B = 6845.985332 C = 8002.145663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 0.935 3.065 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.067 0.933 9 N -0.606 5.606 10 C 0.150 3.850 11 C 0.047 3.953 12 O -0.397 6.397 13 C 0.059 3.941 14 C 0.124 3.876 15 H 0.037 0.963 16 C 0.137 3.863 17 N -0.668 5.668 18 C 0.587 3.413 19 O -0.565 6.565 20 C -0.035 4.035 21 N -0.428 5.428 22 C 0.037 3.963 23 C -0.213 4.213 24 Cl 0.033 6.967 25 S 0.331 5.669 26 H 0.249 0.751 27 H 0.005 0.995 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.121 0.879 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.418 0.582 36 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.810 -2.165 -9.662 12.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.222 4.222 3 Si 0.765 3.235 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.024 3.976 11 C -0.031 4.031 12 O -0.316 6.316 13 C -0.020 4.020 14 C 0.018 3.982 15 H 0.054 0.946 16 C 0.014 3.986 17 N -0.318 5.318 18 C 0.369 3.631 19 O -0.446 6.446 20 C -0.308 4.308 21 N -0.146 5.146 22 C -0.122 4.122 23 C -0.364 4.364 24 Cl 0.061 6.939 25 S 0.585 5.415 26 H 0.059 0.941 27 H 0.023 0.977 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.064 0.936 31 H 0.138 0.862 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.256 0.744 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 8.969 -2.880 -9.367 13.284 hybrid contribution -1.062 2.535 -0.468 2.788 sum 7.906 -0.346 -9.835 12.624 Atomic orbital electron populations 1.70087 1.06022 1.25398 1.55334 1.25520 0.95635 1.00011 1.01013 0.85693 0.78609 0.82310 0.76856 1.20298 1.21948 1.21783 1.19213 0.90938 0.83996 1.42758 0.91541 1.44302 1.32405 1.03746 1.52741 1.21232 0.88128 0.96972 0.91255 1.23202 1.00592 0.85210 0.94063 1.87807 1.41555 1.35749 1.66444 1.22991 0.86305 0.99536 0.93164 1.21597 0.93764 0.88477 0.94406 0.94584 1.21359 0.97088 0.90959 0.89223 1.45894 1.12130 1.39936 1.33791 1.16805 0.84577 0.81050 0.80640 1.90790 1.27608 1.56208 1.70009 1.27627 0.93482 1.04891 1.04841 1.66984 1.27914 1.06647 1.13065 1.22139 0.97851 0.98468 0.93749 1.26837 1.00006 1.05914 1.03619 1.98392 1.92234 1.59556 1.43708 1.83815 1.08185 1.26554 1.22954 0.94141 0.97665 0.91742 0.87841 0.93640 0.86153 0.92884 0.88783 0.91962 0.74352 0.78150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.20 11.17 21.65 0.24 -50.96 16 2 C -0.02 -1.30 5.06 84.86 0.43 -0.87 16 3 Si 0.94 44.12 29.57 68.60 2.03 46.15 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 7 C -0.24 -11.88 7.09 84.03 0.60 -11.29 16 8 H 0.07 3.36 5.84 -2.91 -0.02 3.35 16 9 N -0.61 -27.61 3.03 -673.70 -2.04 -29.65 16 10 C 0.15 6.78 5.37 86.35 0.46 7.24 16 11 C 0.05 1.71 6.99 72.08 0.50 2.22 16 12 O -0.40 -14.17 10.74 -148.98 -1.60 -15.77 16 13 C 0.06 1.85 6.29 72.08 0.45 2.30 16 14 C 0.12 4.59 3.20 44.97 0.14 4.74 16 15 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 16 C 0.14 4.75 4.44 86.38 0.38 5.14 16 17 N -0.67 -25.37 3.81 -466.65 -1.78 -27.14 16 18 C 0.59 21.76 7.80 86.58 0.68 22.44 16 19 O -0.57 -22.06 16.94 -4.15 -0.07 -22.13 16 20 C -0.04 -1.17 7.45 87.22 0.65 -0.52 16 21 N -0.43 -14.57 10.24 -190.29 -1.95 -16.52 16 22 C 0.04 1.02 11.21 84.00 0.94 1.96 16 23 C -0.21 -5.02 6.95 66.95 0.47 -4.56 16 24 Cl 0.03 0.61 29.30 -2.72 -0.08 0.53 16 25 S 0.33 8.23 23.03 -56.49 -1.30 6.93 16 26 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 27 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.06 3.27 6.37 -2.38 -0.02 3.25 16 29 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.06 2.31 7.52 -2.39 -0.02 2.29 16 35 H 0.42 17.56 7.04 -92.71 -0.65 16.91 16 36 H 0.20 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -61.05 331.09 -0.35 -61.41 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.49 Total: 18.36 kcal Atomic # 6 Polarization: 23.10 SS G_CDS: 5.71 Total: 28.80 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -5.53 Total: -124.28 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.67 Total: -37.90 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 8.23 SS G_CDS: -1.30 Total: 6.93 kcal Atomic # 17 Polarization: 0.61 SS G_CDS: -0.08 Total: 0.53 kcal Total: -61.05 -0.35 -61.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051026283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.317 kcal (2) G-P(sol) polarization free energy of solvation -61.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds