Wall clock time and date at job start Tue Mar 31 2020 16:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48502 * 109.47298 * 95.39034 * 3 2 1 5 5 H 1.48501 * 109.47327 * 215.39315 * 3 2 1 6 6 H 1.48504 * 109.47133 * 335.39072 * 3 2 1 7 7 C 1.38812 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00415 * 319.92560 * 7 2 1 9 9 N 1.36937 * 119.99871 * 139.92993 * 7 2 1 10 10 C 1.47154 * 120.98214 * 346.38285 * 9 7 2 11 11 C 1.52875 * 108.60541 * 230.50126 * 10 9 7 12 12 O 1.42954 * 109.30343 * 307.93566 * 11 10 9 13 13 C 1.42966 * 114.16512 * 62.45024 * 12 11 10 14 14 C 1.47151 * 120.97976 * 166.67136 * 9 7 2 15 15 H 1.09011 * 109.68049 * 249.15852 * 14 9 7 16 16 C 1.53001 * 109.68585 * 9.67587 * 14 9 7 17 17 N 1.46492 * 109.46968 * 296.10570 * 16 14 9 18 18 C 1.34775 * 120.00241 * 179.97438 * 17 16 14 19 19 O 1.21642 * 119.99775 * 0.02562 * 18 17 16 20 20 C 1.47245 * 120.00489 * 179.97438 * 18 17 16 21 21 C 1.35159 * 123.13445 * 179.73306 * 20 18 17 22 22 S 1.70932 * 108.85739 * 179.87368 * 21 20 18 23 23 C 1.70766 * 91.14935 * 0.32866 * 22 21 20 24 24 Cl 1.73601 * 124.72793 * 179.78674 * 23 22 21 25 25 N 1.28775 * 110.54738 * 359.80636 * 23 22 21 26 26 H 0.96996 * 120.00358 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.68259 * 350.28434 * 10 9 7 28 28 H 1.09004 * 109.67514 * 110.83906 * 10 9 7 29 29 H 1.09007 * 109.58084 * 187.92325 * 11 10 9 30 30 H 1.08996 * 109.36763 * 67.82144 * 11 10 9 31 31 H 1.09001 * 109.51389 * 177.49521 * 13 12 11 32 32 H 1.09004 * 109.51289 * 57.34634 * 13 12 11 33 33 H 1.09000 * 109.46750 * 56.10172 * 16 14 9 34 34 H 1.08994 * 109.47087 * 176.10167 * 16 14 9 35 35 H 0.97000 * 120.00372 * 359.97438 * 17 16 14 36 36 H 1.07993 * 125.57171 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6116 1.9807 1.3939 5 1 3.4861 1.4758 -0.8109 6 1 1.3953 2.6829 -0.5830 7 6 2.0103 -1.2021 0.0005 8 1 1.6605 -2.0274 0.6030 9 7 3.1385 -1.3416 -0.7628 10 6 3.4724 -0.3605 -1.8075 11 6 3.7642 -1.1115 -3.1066 12 8 4.7369 -2.1287 -2.8562 13 6 4.3105 -3.1310 -1.9302 14 6 4.0496 -2.4804 -0.5669 15 1 4.9900 -2.1294 -0.1417 16 6 3.4061 -3.4989 0.3763 17 7 3.2214 -2.8926 1.6970 18 6 2.6674 -3.6083 2.6956 19 8 2.3211 -4.7580 2.5003 20 6 2.4822 -2.9991 4.0233 21 6 1.9294 -3.6563 5.0671 22 16 1.8956 -2.6135 6.4210 23 6 2.6124 -1.3566 5.5142 24 17 2.9824 0.2226 6.1331 25 7 2.8398 -1.7431 4.3071 26 1 -0.4850 0.8400 -0.0004 27 1 2.6317 0.3168 -1.9572 28 1 4.3536 0.2076 -1.5093 29 1 4.1489 -0.4157 -3.8524 30 1 2.8456 -1.5688 -3.4740 31 1 5.0881 -3.8882 -1.8295 32 1 3.3937 -3.5957 -2.2932 33 1 2.4383 -3.8026 -0.0226 34 1 4.0529 -4.3718 0.4644 35 1 3.4978 -1.9760 1.8529 36 1 1.5695 -4.6743 5.0490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051199631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:09 Heat of formation + Delta-G solvation = 15.639745 kcal Electronic energy + Delta-G solvation = -24403.379534 eV Core-core repulsion = 20656.713874 eV Total energy + Delta-G solvation = -3746.665660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.40774 -39.03033 -38.19188 -36.98515 -35.49777 -33.76235 -31.76658 -31.03449 -30.49492 -27.58880 -26.60390 -24.91826 -23.47860 -22.69444 -21.76701 -19.99685 -19.72095 -18.88180 -17.02566 -16.55695 -16.11349 -15.96361 -15.74446 -15.36893 -14.96779 -14.87880 -14.42766 -14.05778 -13.89280 -13.89070 -13.65330 -13.01727 -12.44729 -12.18918 -12.12112 -11.95498 -11.91009 -11.62864 -11.55960 -11.01715 -10.76988 -10.44974 -10.22990 -10.10638 -9.91183 -9.82210 -9.81041 -9.44897 -9.18381 -9.02183 -8.43817 -8.31110 -7.20933 -6.06232 -3.19212 0.31610 0.56461 1.32915 1.72882 1.94347 3.37142 3.47665 3.51443 3.57887 3.67776 4.29760 4.37121 4.52727 4.66728 5.08877 5.14005 5.22412 5.40850 5.53773 5.63100 5.71087 5.85512 5.94279 5.97227 6.03513 6.13054 6.25547 6.44385 6.61340 6.78760 6.88786 7.16112 7.63942 7.74959 8.02210 8.21502 8.57973 8.83338 9.67736 10.01126 11.05039 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.004618 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.875827 B = 6061.144213 C = 7308.044309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.042 3.958 3 Si 0.811 3.189 4 H -0.291 1.291 5 H -0.247 1.247 6 H -0.298 1.298 7 C -0.285 4.285 8 H 0.103 0.897 9 N -0.600 5.600 10 C 0.113 3.887 11 C 0.042 3.958 12 O -0.389 6.389 13 C 0.056 3.944 14 C 0.130 3.870 15 H 0.045 0.955 16 C 0.131 3.869 17 N -0.677 5.677 18 C 0.590 3.410 19 O -0.548 6.548 20 C 0.036 3.964 21 C -0.225 4.225 22 S 0.262 5.738 23 C 0.049 3.951 24 Cl 0.029 6.971 25 N -0.418 5.418 26 H 0.261 0.739 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.420 0.580 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.320 -4.770 10.419 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.160 4.160 3 Si 0.638 3.362 4 H -0.219 1.219 5 H -0.172 1.172 6 H -0.225 1.225 7 C -0.411 4.411 8 H 0.121 0.879 9 N -0.326 5.326 10 C -0.013 4.013 11 C -0.036 4.036 12 O -0.307 6.307 13 C -0.023 4.023 14 C 0.023 3.977 15 H 0.063 0.937 16 C 0.008 3.992 17 N -0.327 5.327 18 C 0.372 3.628 19 O -0.428 6.428 20 C -0.099 4.099 21 C -0.367 4.367 22 S 0.514 5.486 23 C -0.256 4.256 24 Cl 0.056 6.944 25 N -0.136 5.136 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.259 0.741 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.043 -5.025 10.843 13.392 hybrid contribution 0.288 1.651 -0.511 1.752 sum 6.332 -3.374 10.332 12.579 Atomic orbital electron populations 1.70194 1.06177 1.26819 1.47970 1.24848 0.94515 0.97370 0.99227 0.88321 0.82386 0.86554 0.78938 1.21874 1.17221 1.22470 1.19016 0.98322 0.98827 1.24936 0.87934 1.44463 1.25650 1.24538 1.37960 1.22047 0.99243 0.92023 0.87953 1.23112 0.91960 0.90385 0.98182 1.87817 1.41888 1.37923 1.63112 1.22893 0.99822 0.90071 0.89558 1.21386 0.93391 0.89126 0.93811 0.93723 1.21312 1.01554 0.94671 0.81712 1.45837 1.59645 1.17532 1.09730 1.16866 0.78546 0.85145 0.82247 1.90783 1.52224 1.17139 1.82618 1.20336 1.03821 0.88582 0.97202 1.26745 1.06070 1.07424 0.96500 1.82777 1.53638 1.00454 1.11730 1.27117 1.07523 0.96410 0.94529 1.98436 1.92971 1.19221 1.83752 1.66703 1.17754 1.13463 1.15664 0.92903 0.90630 0.94583 0.89792 0.93050 0.89418 0.92785 0.90230 0.91611 0.74144 0.78514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.97 55.49 0.78 -25.01 16 2 C 0.04 1.16 4.92 -17.43 -0.09 1.07 16 3 Si 0.81 20.24 26.33 -169.99 -4.48 15.76 16 4 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 5 H -0.25 -5.71 4.28 56.52 0.24 -5.47 16 6 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 7 C -0.29 -7.38 8.13 -15.06 -0.12 -7.50 16 8 H 0.10 2.82 5.26 -52.49 -0.28 2.54 16 9 N -0.60 -13.39 2.96 -164.55 -0.49 -13.87 16 10 C 0.11 2.39 4.37 -3.75 -0.02 2.38 16 11 C 0.04 0.75 6.97 37.09 0.26 1.01 16 12 O -0.39 -7.05 10.74 -35.23 -0.38 -7.42 16 13 C 0.06 0.92 6.29 37.31 0.23 1.15 16 14 C 0.13 2.41 3.17 -67.42 -0.21 2.19 16 15 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 16 C 0.13 2.38 4.41 -4.05 -0.02 2.36 16 17 N -0.68 -13.07 3.58 -61.44 -0.22 -13.29 16 18 C 0.59 11.31 7.80 -12.60 -0.10 11.21 16 19 O -0.55 -11.31 16.71 5.24 0.09 -11.22 16 20 C 0.04 0.60 6.70 -84.52 -0.57 0.04 16 21 C -0.23 -2.96 10.61 29.64 0.31 -2.65 16 22 S 0.26 2.72 22.96 -107.50 -2.47 0.25 16 23 C 0.05 0.70 7.98 51.48 0.41 1.11 16 24 Cl 0.03 0.37 29.33 -51.86 -1.52 -1.15 16 25 N -0.42 -7.24 10.13 -9.45 -0.10 -7.34 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.08 1.73 4.77 -51.93 -0.25 1.48 16 28 H 0.04 0.78 6.85 -51.93 -0.36 0.42 16 29 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.62 7.56 -51.93 -0.39 1.23 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.42 8.56 7.13 -40.82 -0.29 8.27 16 36 H 0.20 2.21 8.03 -52.49 -0.42 1.79 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -31.83 323.31 -7.63 -39.45 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -3.81 Total: 6.58 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 0.10 Total: 12.38 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.03 Total: -59.50 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.29 Total: -18.65 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.48 Total: 15.76 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.47 Total: 0.25 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.52 Total: -1.15 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.83 -7.63 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051199631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.094 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds