Wall clock time and date at job start Tue Mar 31 2020 17:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.64086 * 2 1 4 4 C 1.54322 * 110.72318 * 236.65939 * 2 1 3 5 5 N 1.47022 * 107.27169 * 219.44421 * 4 2 1 6 6 C 1.34775 * 125.64556 * 178.98431 * 5 4 2 7 7 O 1.21712 * 120.00209 * 354.42433 * 6 5 4 8 8 C 1.46541 * 119.99929 * 174.42148 * 6 5 4 9 9 C 1.37955 * 126.22287 * 172.94326 * 8 6 5 10 10 C 1.39799 * 107.12747 * 179.88428 * 9 8 6 11 11 Cl 1.73598 * 126.06373 * 180.14708 * 10 9 8 12 12 C 1.35722 * 107.87541 * 0.37868 * 10 9 8 13 13 Cl 1.73595 * 125.58436 * 179.78531 * 12 10 9 14 14 N 1.35663 * 108.83046 * 359.76579 * 12 10 9 15 15 H 0.97001 * 125.69299 * 180.02562 * 14 12 10 16 16 C 1.47419 * 108.70395 * 358.93807 * 5 4 2 17 17 C 1.54913 * 104.83398 * 24.12983 * 16 5 4 18 18 H 1.08999 * 111.03979 * 204.90145 * 17 16 5 19 19 N 1.46504 * 111.00163 * 81.06352 * 17 16 5 20 20 C 1.36932 * 119.99918 * 92.80959 * 19 17 16 21 21 H 1.08001 * 120.00247 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99684 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00117 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99791 * 180.27367 * 22 20 19 25 25 H 1.48505 * 109.47181 * 179.72175 * 24 22 20 26 26 H 1.48496 * 109.47237 * 299.72190 * 24 22 20 27 27 H 1.48505 * 109.47310 * 59.72286 * 24 22 20 28 28 H 1.09003 * 109.47163 * 296.86153 * 1 2 3 29 29 H 1.08994 * 109.47123 * 56.86314 * 1 2 3 30 30 H 1.08996 * 109.47069 * 176.86110 * 1 2 3 31 31 H 1.08996 * 109.87914 * 338.86492 * 4 2 1 32 32 H 1.08997 * 109.88199 * 99.87146 * 4 2 1 33 33 H 1.07997 * 126.44043 * 0.02562 * 9 8 6 34 34 H 1.08994 * 110.37021 * 265.29251 * 16 5 4 35 35 H 1.09006 * 110.36792 * 142.96615 * 16 5 4 36 36 H 0.97006 * 119.99516 * 272.80185 * 19 17 16 37 37 H 0.96998 * 119.99982 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7933 -1.2058 5 7 3.2446 -1.5520 -0.7362 6 6 3.9925 -2.3860 -1.4855 7 8 3.6606 -2.6401 -2.6286 8 6 5.2053 -2.9870 -0.9239 9 6 5.9865 -3.9552 -1.5200 10 6 7.0376 -4.2346 -0.6416 11 17 8.3143 -5.3804 -0.9073 12 6 6.8799 -3.4548 0.4580 13 17 7.9279 -3.4362 1.8418 14 7 5.7695 -2.6919 0.2983 15 1 5.4297 -2.0463 0.9375 16 6 3.4633 -1.2485 0.6898 17 6 2.0790 -0.7932 1.2153 18 1 2.1843 -0.1482 2.0876 19 7 1.2272 -1.9461 1.5180 20 6 1.2022 -2.4650 2.7849 21 1 1.8107 -2.0247 3.5610 22 6 0.3947 -3.5571 3.0718 23 7 -0.3473 -4.0934 2.1262 24 14 0.3547 -4.2602 4.8020 25 1 -0.5841 -5.4099 4.8475 26 1 1.7156 -4.7170 5.1822 27 1 -0.0991 -3.2126 5.7517 28 1 -0.3634 0.4643 0.9168 29 1 -0.3633 0.5617 -0.8605 30 1 -0.3633 -1.0261 -0.0563 31 1 1.3130 -1.4785 -1.5749 32 1 2.3716 -0.1060 -1.9985 33 1 5.8190 -4.4102 -2.4851 34 1 4.1931 -0.4464 0.7993 35 1 3.7961 -2.1404 1.2208 36 1 0.6808 -2.3418 0.8208 37 1 -0.9113 -4.8567 2.3266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054952758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:07 Heat of formation + Delta-G solvation = 21.577811 kcal Electronic energy + Delta-G solvation = -24089.378349 eV Core-core repulsion = 20340.926476 eV Total energy + Delta-G solvation = -3748.451872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64983 -39.55963 -37.65413 -36.93463 -36.54540 -34.09082 -32.70278 -31.25035 -30.63133 -29.35805 -28.03448 -26.22247 -24.14912 -23.09153 -21.41171 -21.06540 -20.40816 -19.43357 -17.99442 -17.43398 -16.48089 -16.14536 -15.52015 -15.08953 -14.82278 -14.54358 -14.22944 -13.92094 -13.69034 -13.45937 -13.17621 -13.05622 -12.85465 -12.38577 -12.13781 -12.04526 -11.89143 -11.68069 -11.55841 -11.24193 -11.03357 -10.98598 -10.85866 -10.61919 -10.41225 -10.13251 -10.00248 -9.78542 -9.19132 -9.11495 -8.56862 -8.26628 -7.18638 -5.94136 -3.25802 1.16338 1.34954 2.01243 2.13104 2.92755 3.26772 3.32726 3.37555 3.38365 3.39782 4.41843 4.48056 4.74297 4.89948 4.92963 5.17390 5.25517 5.29692 5.47547 5.52402 5.54575 5.65795 5.80957 5.96286 5.99892 6.08617 6.18455 6.21111 6.27379 6.32318 6.45358 6.56705 6.81788 6.85155 7.51157 7.60102 8.19725 8.22589 9.34944 9.87801 10.22296 11.27186 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.004339 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.365956 B = 6451.440629 C = 7960.440358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.115 4.115 3 H 0.081 0.919 4 C 0.117 3.883 5 N -0.600 5.600 6 C 0.603 3.397 7 O -0.530 6.530 8 C -0.001 4.001 9 C -0.094 4.094 10 C -0.098 4.098 11 Cl -0.034 7.034 12 C 0.094 3.906 13 Cl 0.000 7.000 14 N -0.519 5.519 15 H 0.431 0.569 16 C 0.047 3.953 17 C 0.176 3.824 18 H 0.078 0.922 19 N -0.705 5.705 20 C -0.257 4.257 21 H 0.072 0.928 22 C -0.002 4.002 23 N -0.924 5.924 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.284 1.284 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.166 0.834 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.389 0.611 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.458 6.384 -4.044 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 H 0.099 0.901 4 C -0.005 4.005 5 N -0.332 5.332 6 C 0.392 3.608 7 O -0.407 6.407 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.133 4.133 11 Cl -0.005 7.005 12 C -0.051 4.051 13 Cl 0.028 6.972 14 N -0.124 5.124 15 H 0.277 0.723 16 C -0.080 4.080 17 C 0.063 3.937 18 H 0.096 0.904 19 N -0.345 5.345 20 C -0.388 4.388 21 H 0.089 0.911 22 C -0.200 4.200 23 N -0.570 5.570 24 Si 0.737 3.263 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.211 1.211 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.184 0.816 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.224 0.776 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.373 6.167 -4.306 15.343 hybrid contribution -0.003 -0.489 1.358 1.444 sum 13.370 5.678 -2.948 14.822 Atomic orbital electron populations 1.21593 0.93128 1.03154 1.00988 1.22557 0.97441 0.98505 0.94965 0.90062 1.22016 0.87422 0.94320 0.96700 1.48201 1.29779 1.43796 1.11447 1.16402 0.81238 0.78321 0.84877 1.90849 1.71108 1.61205 1.17545 1.20411 0.99077 1.04835 0.87185 1.21074 0.92626 0.97689 1.00594 1.19556 0.96993 1.00791 0.95991 1.98334 1.48203 1.57729 1.96243 1.20603 0.91486 1.00379 0.92645 1.98415 1.61734 1.97718 1.39283 1.42697 1.19804 1.32993 1.16954 0.72334 1.23742 1.03040 1.00070 0.81112 1.21304 0.87702 0.90139 0.94579 0.90388 1.42367 1.49255 1.32544 1.10340 1.19149 1.22022 1.10393 0.87239 0.91054 1.24765 0.99056 0.98509 0.97656 1.69644 1.30107 1.25372 1.31901 0.86295 0.77413 0.78550 0.84027 1.21556 1.21178 1.21065 0.92044 0.93606 0.91149 0.90897 0.91831 0.81599 0.92321 0.90298 0.77597 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.71 37.16 0.32 -1.58 16 2 C -0.11 -1.59 3.42 -88.78 -0.30 -1.89 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.76 6.46 -3.07 -0.02 1.74 16 5 N -0.60 -9.59 3.33 -172.11 -0.57 -10.16 16 6 C 0.60 10.46 7.80 -12.91 -0.10 10.36 16 7 O -0.53 -10.54 17.23 5.18 0.09 -10.45 16 8 C 0.00 -0.01 6.82 -81.93 -0.56 -0.57 16 9 C -0.09 -1.35 10.65 -39.10 -0.42 -1.77 16 10 C -0.10 -1.33 6.66 -39.90 -0.27 -1.60 16 11 Cl -0.03 -0.41 29.12 -51.86 -1.51 -1.92 16 12 C 0.09 1.23 7.75 -16.76 -0.13 1.10 16 13 Cl 0.00 0.00 29.13 -51.86 -1.51 -1.51 16 14 N -0.52 -6.93 5.37 -6.51 -0.03 -6.97 16 15 H 0.43 5.14 5.36 -40.82 -0.22 4.92 16 16 C 0.05 0.69 4.94 -2.53 -0.01 0.68 16 17 C 0.18 2.90 3.47 -65.78 -0.23 2.67 16 18 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 19 N -0.71 -15.49 4.59 -51.34 -0.24 -15.73 16 20 C -0.26 -6.43 9.96 -15.06 -0.15 -6.58 16 21 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 22 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 23 N -0.92 -26.45 13.06 55.49 0.72 -25.73 16 24 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.24 6.48 -51.93 -0.34 0.90 16 31 H 0.07 1.23 7.76 -51.93 -0.40 0.83 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.17 2.22 8.06 -52.49 -0.42 1.80 16 34 H 0.06 0.67 7.84 -51.93 -0.41 0.26 16 35 H 0.08 1.28 6.21 -51.93 -0.32 0.95 16 36 H 0.39 9.44 6.38 -40.82 -0.26 9.18 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -29.23 339.72 -8.94 -38.17 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.03 Total: 10.56 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -1.96 Total: 2.42 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.12 Total: -58.58 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -3.02 Total: -3.43 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.23 -8.94 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054952758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.750 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds