Wall clock time and date at job start Tue Mar 31 2020 17:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.64086 * 2 1 4 4 C 1.54322 * 110.72318 * 236.65939 * 2 1 3 5 5 N 1.47022 * 107.27169 * 219.44421 * 4 2 1 6 6 C 1.34775 * 125.64556 * 178.98431 * 5 4 2 7 7 O 1.21712 * 120.00209 * 354.42433 * 6 5 4 8 8 C 1.46541 * 119.99929 * 174.42148 * 6 5 4 9 9 C 1.37955 * 126.22287 * 172.94326 * 8 6 5 10 10 C 1.39799 * 107.12747 * 179.88428 * 9 8 6 11 11 Cl 1.73598 * 126.06373 * 180.14708 * 10 9 8 12 12 C 1.35722 * 107.87541 * 0.37868 * 10 9 8 13 13 Cl 1.73595 * 125.58436 * 179.78531 * 12 10 9 14 14 N 1.35663 * 108.83046 * 359.76579 * 12 10 9 15 15 H 0.97001 * 125.69299 * 180.02562 * 14 12 10 16 16 C 1.47419 * 108.70395 * 358.93807 * 5 4 2 17 17 C 1.54913 * 104.83398 * 24.12983 * 16 5 4 18 18 H 1.08999 * 111.03979 * 204.90145 * 17 16 5 19 19 N 1.46504 * 111.00163 * 81.06352 * 17 16 5 20 20 C 1.36932 * 119.99918 * 92.80959 * 19 17 16 21 21 H 1.08001 * 120.00247 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99684 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00117 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99791 * 180.27367 * 22 20 19 25 25 H 1.48505 * 109.47181 * 179.72175 * 24 22 20 26 26 H 1.48496 * 109.47237 * 299.72190 * 24 22 20 27 27 H 1.48505 * 109.47310 * 59.72286 * 24 22 20 28 28 H 1.09003 * 109.47163 * 296.86153 * 1 2 3 29 29 H 1.08994 * 109.47123 * 56.86314 * 1 2 3 30 30 H 1.08996 * 109.47069 * 176.86110 * 1 2 3 31 31 H 1.08996 * 109.87914 * 338.86492 * 4 2 1 32 32 H 1.08997 * 109.88199 * 99.87146 * 4 2 1 33 33 H 1.07997 * 126.44043 * 0.02562 * 9 8 6 34 34 H 1.08994 * 110.37021 * 265.29251 * 16 5 4 35 35 H 1.09006 * 110.36792 * 142.96615 * 16 5 4 36 36 H 0.97006 * 119.99516 * 272.80185 * 19 17 16 37 37 H 0.96998 * 119.99982 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7933 -1.2058 5 7 3.2446 -1.5520 -0.7362 6 6 3.9925 -2.3860 -1.4855 7 8 3.6606 -2.6401 -2.6286 8 6 5.2053 -2.9870 -0.9239 9 6 5.9865 -3.9552 -1.5200 10 6 7.0376 -4.2346 -0.6416 11 17 8.3143 -5.3804 -0.9073 12 6 6.8799 -3.4548 0.4580 13 17 7.9279 -3.4362 1.8418 14 7 5.7695 -2.6919 0.2983 15 1 5.4297 -2.0463 0.9375 16 6 3.4633 -1.2485 0.6898 17 6 2.0790 -0.7932 1.2153 18 1 2.1843 -0.1482 2.0876 19 7 1.2272 -1.9461 1.5180 20 6 1.2022 -2.4650 2.7849 21 1 1.8107 -2.0247 3.5610 22 6 0.3947 -3.5571 3.0718 23 7 -0.3473 -4.0934 2.1262 24 14 0.3547 -4.2602 4.8020 25 1 -0.5841 -5.4099 4.8475 26 1 1.7156 -4.7170 5.1822 27 1 -0.0991 -3.2126 5.7517 28 1 -0.3634 0.4643 0.9168 29 1 -0.3633 0.5617 -0.8605 30 1 -0.3633 -1.0261 -0.0563 31 1 1.3130 -1.4785 -1.5749 32 1 2.3716 -0.1060 -1.9985 33 1 5.8190 -4.4102 -2.4851 34 1 4.1931 -0.4464 0.7993 35 1 3.7961 -2.1404 1.2208 36 1 0.6808 -2.3418 0.8208 37 1 -0.9113 -4.8567 2.3266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054952758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:06 Heat of formation + Delta-G solvation = 3.895435 kcal Electronic energy + Delta-G solvation = -24090.145114 eV Core-core repulsion = 20340.926476 eV Total energy + Delta-G solvation = -3749.218638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.76904 -40.81649 -39.00719 -37.93091 -37.54930 -35.75025 -34.10882 -32.52176 -32.12573 -30.50493 -29.49565 -27.41718 -25.89397 -24.42536 -22.65115 -22.16209 -21.53997 -20.71588 -19.50368 -18.91555 -17.73525 -17.45984 -16.82990 -16.42324 -16.19048 -15.80062 -15.63352 -15.34637 -14.89846 -14.65150 -14.56924 -14.42669 -14.10890 -13.67544 -13.45399 -13.08585 -13.01147 -12.94146 -12.86322 -12.78652 -12.51884 -12.29416 -12.22013 -12.03843 -11.96925 -11.51622 -11.44690 -11.32521 -10.99187 -10.22430 -9.85309 -9.38979 -8.99416 -7.94112 -5.22501 0.01033 0.30756 0.98631 1.03055 1.48198 1.48925 1.55024 1.72370 2.08338 2.20486 2.55308 3.29347 3.35767 3.62997 3.74912 3.78261 3.88141 4.07650 4.16888 4.33243 4.43794 4.48141 4.58642 4.67373 4.78255 4.91025 4.93539 5.00627 5.10945 5.17791 5.26857 5.35687 5.52839 5.60030 5.81743 6.26326 6.32895 6.89300 7.34444 8.09277 8.30484 9.28739 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.004339 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.365956 B = 6451.440629 C = 7960.440358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 H 0.124 0.876 4 C 0.115 3.885 5 N -0.601 5.601 6 C 0.598 3.402 7 O -0.567 6.567 8 C -0.020 4.020 9 C -0.095 4.095 10 C -0.108 4.108 11 Cl -0.021 7.021 12 C 0.100 3.900 13 Cl 0.020 6.980 14 N -0.511 5.511 15 H 0.437 0.563 16 C 0.054 3.946 17 C 0.163 3.837 18 H 0.096 0.904 19 N -0.719 5.719 20 C -0.237 4.237 21 H 0.086 0.914 22 C -0.070 4.070 23 N -0.968 5.968 24 Si 0.963 3.037 25 H -0.305 1.305 26 H -0.280 1.280 27 H -0.275 1.275 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.170 0.830 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.373 0.627 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.464 8.336 -3.011 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.142 0.858 4 C -0.007 4.007 5 N -0.332 5.332 6 C 0.387 3.613 7 O -0.447 6.447 8 C -0.134 4.134 9 C -0.122 4.122 10 C -0.142 4.142 11 Cl 0.008 6.992 12 C -0.046 4.046 13 Cl 0.049 6.951 14 N -0.117 5.117 15 H 0.284 0.716 16 C -0.071 4.071 17 C 0.052 3.948 18 H 0.114 0.886 19 N -0.358 5.358 20 C -0.369 4.369 21 H 0.104 0.896 22 C -0.263 4.263 23 N -0.618 5.618 24 Si 0.793 3.207 25 H -0.232 1.232 26 H -0.207 1.207 27 H -0.201 1.201 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.187 0.813 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.206 0.794 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.426 8.193 -3.235 17.763 hybrid contribution -0.520 -1.020 1.031 1.540 sum 14.906 7.173 -2.204 16.688 Atomic orbital electron populations 1.21522 0.93893 1.01021 1.01968 1.22549 0.96680 0.99892 0.92688 0.85840 1.22100 0.86618 0.94107 0.97904 1.48297 1.29632 1.43416 1.11901 1.16673 0.81791 0.78180 0.84624 1.90818 1.72250 1.62514 1.19108 1.20159 0.99108 1.05888 0.88292 1.21241 0.92706 0.97329 1.00900 1.19625 0.97275 1.01322 0.96022 1.98337 1.47460 1.57230 1.96218 1.20764 0.91252 0.99567 0.93027 1.98427 1.60991 1.97607 1.38119 1.42586 1.19645 1.33028 1.16401 0.71582 1.23699 1.02649 1.00874 0.79915 1.21666 0.87785 0.88842 0.96504 0.88600 1.42537 1.50231 1.34017 1.08990 1.19616 1.19754 1.08968 0.88576 0.89597 1.25463 1.00202 1.00032 1.00576 1.69811 1.32097 1.26222 1.33672 0.85368 0.77015 0.77503 0.80784 1.23190 1.20662 1.20074 0.92342 0.91083 0.95021 0.93762 0.89751 0.81292 0.87633 0.91791 0.79399 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 8.71 71.98 0.63 -2.90 16 2 C -0.10 -2.46 3.42 -9.60 -0.03 -2.49 16 3 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.11 3.29 6.46 86.73 0.56 3.85 16 5 N -0.60 -18.42 3.33 -816.66 -2.72 -21.13 16 6 C 0.60 20.54 7.80 86.41 0.67 21.22 16 7 O -0.57 -22.92 17.23 -4.39 -0.08 -22.99 16 8 C -0.02 -0.60 6.82 40.30 0.27 -0.33 16 9 C -0.10 -2.69 10.65 22.58 0.24 -2.45 16 10 C -0.11 -2.77 6.66 22.06 0.15 -2.62 16 11 Cl -0.02 -0.48 29.12 -2.72 -0.08 -0.56 16 12 C 0.10 2.43 7.75 83.52 0.65 3.07 16 13 Cl 0.02 0.41 29.13 -2.72 -0.08 0.33 16 14 N -0.51 -12.70 5.37 -174.52 -0.94 -13.64 16 15 H 0.44 9.30 5.36 -92.71 -0.50 8.81 16 16 C 0.05 1.44 4.94 86.86 0.43 1.87 16 17 C 0.16 4.96 3.47 46.38 0.16 5.12 16 18 H 0.10 2.63 8.09 -2.39 -0.02 2.61 16 19 N -0.72 -31.31 4.59 -316.36 -1.45 -32.76 16 20 C -0.24 -11.68 9.96 84.03 0.84 -10.84 16 21 H 0.09 3.90 7.83 -2.91 -0.02 3.88 16 22 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 23 N -0.97 -57.27 13.06 21.65 0.28 -56.99 16 24 Si 0.96 43.89 29.55 68.60 2.03 45.92 16 25 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.03 1.13 6.48 -2.39 -0.02 1.11 16 31 H 0.04 1.52 7.76 -2.39 -0.02 1.51 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.17 4.53 8.06 -2.91 -0.02 4.51 16 34 H 0.11 1.89 7.84 -2.39 -0.02 1.87 16 35 H 0.06 1.93 6.21 -2.38 -0.01 1.92 16 36 H 0.37 18.61 6.38 -92.70 -0.59 18.02 16 37 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -64.93 339.72 2.05 -62.87 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.05 Total: 28.76 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 5.03 Total: 10.19 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -4.82 Total: -124.52 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.08 Total: -22.99 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -0.16 Total: -0.23 kcal Total: -64.93 2.05 -62.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054952758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.768 kcal (2) G-P(sol) polarization free energy of solvation -64.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds