Wall clock time and date at job start Tue Mar 31 2020 17:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 110.89197 * 2 1 4 4 C 1.54914 * 111.03788 * 123.90374 * 2 1 3 5 5 N 1.47417 * 104.83418 * 155.09539 * 4 2 1 6 6 C 1.34784 * 125.64715 * 155.90544 * 5 4 2 7 7 O 1.21710 * 120.00034 * 0.02562 * 6 5 4 8 8 C 1.46542 * 119.99993 * 180.02562 * 6 5 4 9 9 C 1.37954 * 126.22462 * 179.69254 * 8 6 5 10 10 C 1.39793 * 107.13004 * 179.88503 * 9 8 6 11 11 Cl 1.73598 * 126.06191 * 180.14712 * 10 9 8 12 12 C 1.35719 * 107.87452 * 0.37291 * 10 9 8 13 13 Cl 1.73597 * 125.58542 * 179.78370 * 12 10 9 14 14 N 1.35662 * 108.82950 * 359.77182 * 12 10 9 15 15 H 0.97000 * 125.69454 * 180.02562 * 14 12 10 16 16 C 1.47313 * 108.74014 * 335.71879 * 5 4 2 17 17 C 1.54329 * 107.11641 * 1.29878 * 16 5 4 18 18 H 1.09003 * 110.71806 * 263.52312 * 17 16 5 19 19 N 1.46506 * 110.71899 * 140.43063 * 17 16 5 20 20 C 1.36934 * 120.00324 * 88.83992 * 19 17 16 21 21 H 1.07997 * 119.99709 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00305 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00381 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99798 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47115 * 89.99600 * 24 22 20 26 26 H 1.48495 * 109.47187 * 209.99433 * 24 22 20 27 27 H 1.48496 * 109.47261 * 329.99509 * 24 22 20 28 28 H 1.09004 * 109.47541 * 183.88060 * 1 2 3 29 29 H 1.08998 * 109.47414 * 303.88123 * 1 2 3 30 30 H 1.09002 * 109.47320 * 63.88078 * 1 2 3 31 31 H 1.08998 * 110.36477 * 273.94184 * 4 2 1 32 32 H 1.09003 * 110.36543 * 36.14748 * 4 2 1 33 33 H 1.08001 * 126.43258 * 0.02562 * 9 8 6 34 34 H 1.08998 * 110.06888 * 241.87338 * 16 5 4 35 35 H 1.08998 * 109.85184 * 120.60594 * 16 5 4 36 36 H 0.97002 * 119.99472 * 268.83993 * 19 17 16 37 37 H 0.97000 * 120.00158 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0860 -0.8065 1.2000 5 7 3.4279 -1.2423 0.7726 6 6 4.4489 -1.5603 1.5930 7 8 4.3017 -1.4994 2.7996 8 6 5.7362 -1.9795 1.0321 9 6 6.8632 -2.3265 1.7481 10 6 7.8540 -2.6602 0.8201 11 17 9.4703 -3.1737 1.1910 12 6 7.3298 -2.5067 -0.4223 13 17 8.1685 -2.7930 -1.9151 14 7 6.0430 -2.0932 -0.3066 15 1 5.4393 -1.9087 -1.0432 16 6 3.4675 -1.2771 -0.6996 17 6 2.0861 -0.8075 -1.2024 18 1 1.4454 -1.6613 -1.4231 19 7 2.2278 0.0502 -2.3817 20 6 2.2492 -0.5048 -3.6334 21 1 2.1612 -1.5747 -3.7513 22 6 2.3829 0.3079 -4.7507 23 7 2.4030 -0.2254 -5.9539 24 14 2.5344 2.1586 -4.5468 25 1 3.9670 2.5265 -4.4151 26 1 1.9565 2.8364 -5.7349 27 1 1.8001 2.5841 -3.3283 28 1 -0.3634 -1.0253 0.0696 29 1 -0.3634 0.5729 0.8531 30 1 -0.3634 0.4524 -0.9227 31 1 2.1566 -0.1719 2.0835 32 1 1.4520 -1.6695 1.4035 33 1 6.9609 -2.3402 2.8235 34 1 3.6620 -2.2925 -1.0446 35 1 4.2433 -0.6042 -1.0650 36 1 2.3064 1.0112 -2.2758 37 1 2.4969 0.3425 -6.7346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054952759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:10 Heat of formation + Delta-G solvation = 20.998172 kcal Electronic energy + Delta-G solvation = -23811.138749 eV Core-core repulsion = 20062.661742 eV Total energy + Delta-G solvation = -3748.477007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75642 -39.69891 -37.81303 -36.94023 -36.61988 -34.44652 -32.92342 -31.43459 -31.11373 -29.49589 -28.24304 -26.45794 -24.28904 -22.71438 -21.19595 -21.14196 -20.51176 -20.36415 -18.00408 -17.75015 -16.66836 -16.35906 -15.67865 -15.29891 -14.82417 -14.63944 -14.40817 -13.91002 -13.67582 -13.60451 -13.52901 -13.31831 -12.79942 -12.71038 -12.47590 -12.10412 -11.92674 -11.91316 -11.64684 -11.54928 -11.32318 -11.07107 -10.98247 -10.84551 -10.51482 -10.29514 -10.17536 -9.81356 -9.24351 -9.22214 -8.77594 -8.39209 -7.60414 -6.00874 -3.40997 1.04480 1.32788 1.94045 2.01944 2.74373 3.15331 3.19063 3.20712 3.23543 3.31093 4.28454 4.37383 4.63004 4.75148 4.76270 4.82492 5.14777 5.21260 5.31650 5.36445 5.41683 5.48238 5.54846 5.66456 5.80501 5.85365 5.95185 6.02888 6.10835 6.12589 6.28925 6.33249 6.51410 6.77973 7.36070 7.70902 7.97697 8.17096 8.92509 9.64844 9.81752 11.16072 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.004178 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.742479 B = 6700.727488 C = 8736.867734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.612 5.612 6 C 0.604 3.396 7 O -0.530 6.530 8 C -0.013 4.013 9 C -0.091 4.091 10 C -0.103 4.103 11 Cl -0.032 7.032 12 C 0.099 3.901 13 Cl 0.007 6.993 14 N -0.520 5.520 15 H 0.435 0.565 16 C 0.055 3.945 17 C 0.186 3.814 18 H 0.081 0.919 19 N -0.734 5.734 20 C -0.263 4.263 21 H 0.093 0.907 22 C 0.016 3.984 23 N -0.924 5.924 24 Si 0.881 3.119 25 H -0.283 1.283 26 H -0.288 1.288 27 H -0.275 1.275 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.167 0.833 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.365 0.635 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.556 -3.706 13.441 15.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.102 0.898 4 C -0.006 4.006 5 N -0.345 5.345 6 C 0.392 3.608 7 O -0.407 6.407 8 C -0.127 4.127 9 C -0.117 4.117 10 C -0.137 4.137 11 Cl -0.004 7.004 12 C -0.047 4.047 13 Cl 0.036 6.964 14 N -0.126 5.126 15 H 0.282 0.718 16 C -0.071 4.071 17 C 0.074 3.926 18 H 0.099 0.901 19 N -0.375 5.375 20 C -0.393 4.393 21 H 0.111 0.889 22 C -0.182 4.182 23 N -0.569 5.569 24 Si 0.711 3.289 25 H -0.209 1.209 26 H -0.214 1.214 27 H -0.201 1.201 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.184 0.816 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.199 0.801 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.563 -3.859 13.635 15.617 hybrid contribution 0.279 1.311 -0.782 1.552 sum 6.842 -2.548 12.853 14.782 Atomic orbital electron populations 1.21621 0.93287 1.02071 1.02283 1.22689 0.96859 0.99682 0.94469 0.89845 1.22317 0.81897 0.98508 0.97881 1.48479 1.12468 1.66036 1.07554 1.16465 0.81132 0.77594 0.85562 1.90852 1.82156 1.54564 1.13153 1.20363 0.96806 1.13907 0.81632 1.21068 0.89028 1.01790 0.99821 1.19571 0.89625 1.13381 0.91153 1.98338 1.18187 1.89510 1.94348 1.20718 0.86110 1.08810 0.89045 1.98441 1.74046 1.94367 1.29593 1.42858 1.10253 1.50665 1.08819 0.71788 1.23595 1.04292 1.01046 0.78200 1.21176 0.90990 0.94178 0.86274 0.90092 1.42737 1.88326 1.04494 1.01963 1.19039 1.44600 0.94275 0.81352 0.88919 1.24678 1.00975 0.97452 0.95047 1.69689 1.55426 1.34616 0.97195 0.86623 0.78058 0.86970 0.77283 1.20912 1.21433 1.20132 0.92378 0.92823 0.91305 0.90273 0.90896 0.81592 0.91602 0.90838 0.80095 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.31 37.15 0.35 -1.22 16 2 C -0.12 -1.52 3.26 -88.48 -0.29 -1.81 16 3 H 0.08 1.13 8.00 -51.93 -0.42 0.71 16 4 C 0.12 1.45 6.38 -2.53 -0.02 1.43 16 5 N -0.61 -8.50 3.33 -171.87 -0.57 -9.07 16 6 C 0.60 9.04 7.82 -12.91 -0.10 8.94 16 7 O -0.53 -9.09 17.14 5.18 0.09 -9.00 16 8 C -0.01 -0.17 6.89 -81.94 -0.56 -0.74 16 9 C -0.09 -1.15 10.64 -39.10 -0.42 -1.57 16 10 C -0.10 -1.28 6.66 -39.90 -0.27 -1.55 16 11 Cl -0.03 -0.36 29.12 -51.86 -1.51 -1.87 16 12 C 0.10 1.27 7.75 -16.76 -0.13 1.14 16 13 Cl 0.01 0.08 29.13 -51.86 -1.51 -1.43 16 14 N -0.52 -6.75 5.63 -6.51 -0.04 -6.79 16 15 H 0.43 5.56 4.92 -40.82 -0.20 5.36 16 16 C 0.05 0.79 4.88 -2.90 -0.01 0.77 16 17 C 0.19 2.93 3.06 -66.09 -0.20 2.72 16 18 H 0.08 1.31 8.00 -51.93 -0.42 0.89 16 19 N -0.73 -14.68 4.97 -51.65 -0.26 -14.94 16 20 C -0.26 -6.50 10.45 -15.06 -0.16 -6.66 16 21 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 22 C 0.02 0.42 5.50 -17.43 -0.10 0.33 16 23 N -0.92 -26.78 13.97 55.49 0.78 -26.01 16 24 Si 0.88 20.21 27.74 -169.99 -4.71 15.49 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -5.89 6.52 56.52 0.37 -5.52 16 28 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.97 8.04 -51.93 -0.42 0.56 16 32 H 0.07 0.84 7.98 -51.93 -0.41 0.42 16 33 H 0.17 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.07 0.90 7.26 -51.93 -0.38 0.52 16 35 H 0.07 1.11 6.96 -51.93 -0.36 0.75 16 36 H 0.37 7.34 5.60 -40.82 -0.23 7.11 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -28.53 339.87 -8.63 -37.16 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.11 Total: 9.55 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.91 Total: 1.78 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.09 Total: -56.81 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.71 Total: 15.49 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -3.02 Total: -3.30 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.53 -8.63 -37.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054952759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.161 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds