Wall clock time and date at job start Tue Mar 31 2020 17:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 110.89197 * 2 1 4 4 C 1.54914 * 111.03788 * 123.90374 * 2 1 3 5 5 N 1.47417 * 104.83418 * 155.09539 * 4 2 1 6 6 C 1.34784 * 125.64715 * 155.90544 * 5 4 2 7 7 O 1.21710 * 120.00034 * 0.02562 * 6 5 4 8 8 C 1.46542 * 119.99993 * 180.02562 * 6 5 4 9 9 C 1.37954 * 126.22462 * 179.69254 * 8 6 5 10 10 C 1.39793 * 107.13004 * 179.88503 * 9 8 6 11 11 Cl 1.73598 * 126.06191 * 180.14712 * 10 9 8 12 12 C 1.35719 * 107.87452 * 0.37291 * 10 9 8 13 13 Cl 1.73597 * 125.58542 * 179.78370 * 12 10 9 14 14 N 1.35662 * 108.82950 * 359.77182 * 12 10 9 15 15 H 0.97000 * 125.69454 * 180.02562 * 14 12 10 16 16 C 1.47313 * 108.74014 * 335.71879 * 5 4 2 17 17 C 1.54329 * 107.11641 * 1.29878 * 16 5 4 18 18 H 1.09003 * 110.71806 * 263.52312 * 17 16 5 19 19 N 1.46506 * 110.71899 * 140.43063 * 17 16 5 20 20 C 1.36934 * 120.00324 * 88.83992 * 19 17 16 21 21 H 1.07997 * 119.99709 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00305 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00381 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99798 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47115 * 89.99600 * 24 22 20 26 26 H 1.48495 * 109.47187 * 209.99433 * 24 22 20 27 27 H 1.48496 * 109.47261 * 329.99509 * 24 22 20 28 28 H 1.09004 * 109.47541 * 183.88060 * 1 2 3 29 29 H 1.08998 * 109.47414 * 303.88123 * 1 2 3 30 30 H 1.09002 * 109.47320 * 63.88078 * 1 2 3 31 31 H 1.08998 * 110.36477 * 273.94184 * 4 2 1 32 32 H 1.09003 * 110.36543 * 36.14748 * 4 2 1 33 33 H 1.08001 * 126.43258 * 0.02562 * 9 8 6 34 34 H 1.08998 * 110.06888 * 241.87338 * 16 5 4 35 35 H 1.08998 * 109.85184 * 120.60594 * 16 5 4 36 36 H 0.97002 * 119.99472 * 268.83993 * 19 17 16 37 37 H 0.97000 * 120.00158 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0860 -0.8065 1.2000 5 7 3.4279 -1.2423 0.7726 6 6 4.4489 -1.5603 1.5930 7 8 4.3017 -1.4994 2.7996 8 6 5.7362 -1.9795 1.0321 9 6 6.8632 -2.3265 1.7481 10 6 7.8540 -2.6602 0.8201 11 17 9.4703 -3.1737 1.1910 12 6 7.3298 -2.5067 -0.4223 13 17 8.1685 -2.7930 -1.9151 14 7 6.0430 -2.0932 -0.3066 15 1 5.4393 -1.9087 -1.0432 16 6 3.4675 -1.2771 -0.6996 17 6 2.0861 -0.8075 -1.2024 18 1 1.4454 -1.6613 -1.4231 19 7 2.2278 0.0502 -2.3817 20 6 2.2492 -0.5048 -3.6334 21 1 2.1612 -1.5747 -3.7513 22 6 2.3829 0.3079 -4.7507 23 7 2.4030 -0.2254 -5.9539 24 14 2.5344 2.1586 -4.5468 25 1 3.9670 2.5265 -4.4151 26 1 1.9565 2.8364 -5.7349 27 1 1.8001 2.5841 -3.3283 28 1 -0.3634 -1.0253 0.0696 29 1 -0.3634 0.5729 0.8531 30 1 -0.3634 0.4524 -0.9227 31 1 2.1566 -0.1719 2.0835 32 1 1.4520 -1.6695 1.4035 33 1 6.9609 -2.3402 2.8235 34 1 3.6620 -2.2925 -1.0446 35 1 4.2433 -0.6042 -1.0650 36 1 2.3064 1.0112 -2.2758 37 1 2.4969 0.3425 -6.7346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054952759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:09 Heat of formation + Delta-G solvation = 3.977429 kcal Electronic energy + Delta-G solvation = -23811.876824 eV Core-core repulsion = 20062.661742 eV Total energy + Delta-G solvation = -3749.215082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.80067 -40.84736 -39.04935 -37.93858 -37.55771 -36.05053 -34.20216 -33.03446 -32.25402 -30.53858 -29.63908 -27.46440 -25.86432 -24.01260 -22.43682 -22.19092 -21.62419 -21.54332 -19.55228 -19.10676 -17.82842 -17.52968 -16.79101 -16.64818 -16.17879 -15.85133 -15.64993 -15.11990 -14.99358 -14.81629 -14.68348 -14.51624 -14.27865 -13.86754 -13.65833 -13.22209 -13.05932 -13.00800 -12.98513 -12.90747 -12.52821 -12.29023 -12.18627 -12.00463 -11.94746 -11.83656 -11.55176 -11.37756 -11.02122 -10.25515 -9.90614 -9.43874 -9.40531 -8.03747 -5.39842 -0.02199 0.32133 0.97158 1.00404 1.39324 1.40011 1.47911 1.64154 2.03276 2.14023 2.46739 3.13919 3.25233 3.51522 3.57450 3.66904 3.72116 4.08105 4.12462 4.13503 4.32344 4.41251 4.42763 4.64936 4.72622 4.80767 4.88167 4.99925 5.07282 5.09544 5.26290 5.27410 5.46477 5.74288 5.75834 6.18218 6.21597 6.82364 7.04336 7.77722 7.95592 9.16510 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.004178 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.742479 B = 6700.727488 C = 8736.867734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 H 0.083 0.917 4 C 0.117 3.883 5 N -0.610 5.610 6 C 0.605 3.395 7 O -0.554 6.554 8 C -0.026 4.026 9 C -0.085 4.085 10 C -0.105 4.105 11 Cl -0.020 7.020 12 C 0.095 3.905 13 Cl 0.012 6.988 14 N -0.519 5.519 15 H 0.434 0.566 16 C 0.065 3.935 17 C 0.178 3.822 18 H 0.078 0.922 19 N -0.736 5.736 20 C -0.233 4.233 21 H 0.067 0.933 22 C -0.051 4.051 23 N -0.977 5.977 24 Si 0.942 3.058 25 H -0.283 1.283 26 H -0.301 1.301 27 H -0.248 1.248 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.179 0.821 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.368 0.632 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.638 -3.121 15.451 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.125 4.125 3 H 0.101 0.899 4 C -0.005 4.005 5 N -0.342 5.342 6 C 0.395 3.605 7 O -0.433 6.433 8 C -0.140 4.140 9 C -0.112 4.112 10 C -0.140 4.140 11 Cl 0.009 6.991 12 C -0.051 4.051 13 Cl 0.041 6.959 14 N -0.125 5.125 15 H 0.281 0.719 16 C -0.061 4.061 17 C 0.068 3.932 18 H 0.096 0.904 19 N -0.378 5.378 20 C -0.364 4.364 21 H 0.085 0.915 22 C -0.243 4.243 23 N -0.627 5.627 24 Si 0.770 3.230 25 H -0.209 1.209 26 H -0.229 1.229 27 H -0.173 1.173 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.196 0.804 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.202 0.798 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.633 -3.278 15.716 17.370 hybrid contribution 0.287 1.007 -1.337 1.698 sum 6.919 -2.270 14.379 16.118 Atomic orbital electron populations 1.21607 0.91974 1.02959 1.02398 1.22618 0.97850 0.99177 0.92897 0.89865 1.22430 0.81235 0.99121 0.97676 1.48466 1.12952 1.65693 1.07085 1.16543 0.81466 0.77237 0.85268 1.90837 1.82617 1.55828 1.14004 1.20287 0.96769 1.15029 0.81964 1.21274 0.88650 1.00797 1.00462 1.19659 0.90237 1.13150 0.90969 1.98344 1.17188 1.89348 1.94258 1.20867 0.86091 1.08631 0.89468 1.98444 1.73884 1.94310 1.29303 1.42801 1.10353 1.50770 1.08608 0.71886 1.23307 1.02951 1.01230 0.78627 1.21365 0.91819 0.94112 0.85926 0.90412 1.42665 1.88486 1.05029 1.01579 1.19000 1.41144 0.93127 0.83107 0.91525 1.25368 1.02368 1.01815 0.94792 1.69855 1.58661 1.36052 0.98093 0.85613 0.78040 0.81730 0.77607 1.20895 1.22852 1.17262 0.91507 0.90542 0.93005 0.89553 0.89439 0.80408 0.91028 0.91330 0.79802 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.31 71.98 0.67 -2.02 16 2 C -0.11 -2.47 3.26 -9.40 -0.03 -2.51 16 3 H 0.08 2.00 8.00 -2.39 -0.02 1.98 16 4 C 0.12 2.60 6.38 86.86 0.55 3.15 16 5 N -0.61 -15.74 3.33 -815.88 -2.72 -18.45 16 6 C 0.61 17.13 7.82 86.41 0.68 17.80 16 7 O -0.55 -18.08 17.14 -4.38 -0.08 -18.15 16 8 C -0.03 -0.69 6.89 40.30 0.28 -0.41 16 9 C -0.09 -2.04 10.64 22.58 0.24 -1.80 16 10 C -0.11 -2.48 6.66 22.06 0.15 -2.33 16 11 Cl -0.02 -0.41 29.12 -2.72 -0.08 -0.49 16 12 C 0.10 2.32 7.75 83.52 0.65 2.97 16 13 Cl 0.01 0.28 29.13 -2.72 -0.08 0.20 16 14 N -0.52 -12.90 5.63 -174.52 -0.98 -13.88 16 15 H 0.43 10.71 4.92 -92.71 -0.46 10.25 16 16 C 0.06 1.76 4.88 86.67 0.42 2.19 16 17 C 0.18 5.31 3.06 46.18 0.14 5.46 16 18 H 0.08 2.40 8.00 -2.39 -0.02 2.39 16 19 N -0.74 -28.46 4.97 -317.32 -1.58 -30.03 16 20 C -0.23 -11.51 10.45 84.03 0.88 -10.63 16 21 H 0.07 3.60 8.06 -2.91 -0.02 3.58 16 22 C -0.05 -2.72 5.50 84.86 0.47 -2.25 16 23 N -0.98 -58.16 13.97 21.65 0.30 -57.85 16 24 Si 0.94 41.54 27.74 68.60 1.90 43.44 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 26 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 27 H -0.25 -9.68 6.52 99.48 0.65 -9.03 16 28 H 0.07 1.25 8.07 -2.39 -0.02 1.23 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.87 8.04 -2.39 -0.02 1.85 16 32 H 0.09 1.73 7.98 -2.39 -0.02 1.71 16 33 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 34 H 0.07 1.88 7.26 -2.39 -0.02 1.86 16 35 H 0.07 1.97 6.96 -2.39 -0.02 1.96 16 36 H 0.37 13.97 5.60 -92.71 -0.52 13.45 16 37 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -60.90 339.87 1.89 -59.02 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.10 Total: 26.59 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.09 Total: 9.62 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -4.97 Total: -120.23 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.08 Total: -18.15 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.90 Total: 43.44 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.16 Total: -0.29 kcal Total: -60.90 1.89 -59.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054952759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.995 kcal (2) G-P(sol) polarization free energy of solvation -60.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds