Wall clock time and date at job start Tue Mar 31 2020 17:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30948 * 122.89962 * 2 1 4 4 C 1.29586 * 117.32765 * 180.30423 * 3 2 1 5 5 Cl 1.73593 * 124.80822 * 179.75268 * 4 3 2 6 6 S 1.70952 * 110.37625 * 359.73387 * 4 3 2 7 7 C 1.35667 * 122.90051 * 179.80785 * 2 1 3 8 8 C 1.46586 * 126.11067 * 0.02562 * 7 2 1 9 9 O 1.21698 * 120.00485 * 359.71173 * 8 7 2 10 10 N 1.34787 * 119.99703 * 179.71296 * 8 7 2 11 11 C 1.46494 * 120.00004 * 179.97438 * 10 8 7 12 12 H 1.09008 * 110.88436 * 37.42922 * 11 10 8 13 13 C 1.54908 * 111.00587 * 273.54798 * 11 10 8 14 14 N 1.47425 * 104.92961 * 204.82382 * 13 11 10 15 15 C 1.36938 * 125.65179 * 204.15650 * 14 13 11 16 16 H 1.08005 * 119.99558 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00146 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99779 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47268 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47204 * 119.99715 * 19 17 15 22 22 H 1.48508 * 109.46889 * 239.99519 * 19 17 15 23 23 C 1.47290 * 108.55742 * 24.15407 * 14 13 11 24 24 C 1.54325 * 107.30599 * 358.92448 * 23 14 13 25 25 H 1.08997 * 110.72163 * 96.18354 * 24 23 14 26 26 O 1.42898 * 110.87178 * 219.38109 * 24 23 14 27 27 H 1.08995 * 109.47209 * 270.19044 * 1 2 3 28 28 H 1.09004 * 109.47100 * 30.19241 * 1 2 3 29 29 H 1.09002 * 109.47184 * 150.18640 * 1 2 3 30 30 H 0.96999 * 119.99460 * 0.02562 * 10 8 7 31 31 H 1.09002 * 110.36632 * 323.71778 * 13 11 10 32 32 H 1.08995 * 110.36781 * 85.93015 * 13 11 10 33 33 H 0.96999 * 120.00175 * 180.02562 * 18 17 15 34 34 H 1.09004 * 109.85762 * 239.50064 * 23 14 13 35 35 H 1.08999 * 109.87327 * 118.35916 * 23 14 13 36 36 H 0.96700 * 114.00884 * 293.61196 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2182 1.0995 0.0000 4 6 3.5080 0.9737 -0.0061 5 17 4.6326 2.2960 -0.0135 6 16 3.9448 -0.6791 -0.0054 7 6 2.2439 -1.1391 0.0038 8 6 1.7188 -2.5077 0.0079 9 8 0.5169 -2.6984 0.0133 10 7 2.5673 -3.5550 0.0056 11 6 2.0427 -4.9227 0.0102 12 1 1.1455 -4.9969 -0.6045 13 6 1.7670 -5.4068 1.4557 14 7 1.8492 -6.8771 1.3860 15 6 1.2461 -7.7521 2.2496 16 1 0.6489 -7.3777 3.0680 17 6 1.4031 -9.1201 2.0739 18 7 2.1313 -9.5762 1.0769 19 14 0.5798 -10.3135 3.2517 20 1 -0.1771 -9.5531 4.2784 21 1 -0.3520 -11.1899 2.4974 22 1 1.6144 -11.1465 3.9159 23 6 2.6880 -7.2456 0.2327 24 6 3.1220 -5.9348 -0.4567 25 1 4.1109 -5.6288 -0.1156 26 8 3.1011 -6.0763 -1.8785 27 1 -0.3633 0.0034 1.0276 28 1 -0.3633 0.8883 -0.5168 29 1 -0.3634 -0.8917 -0.5109 30 1 3.5253 -3.4029 0.0017 31 1 2.5228 -5.0165 2.1371 32 1 0.7722 -5.0973 1.7761 33 1 2.2408 -10.5321 0.9539 34 1 2.1134 -7.8575 -0.4627 35 1 3.5664 -7.7937 0.5734 36 1 3.7572 -6.6982 -2.2217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077065460.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:31 Heat of formation + Delta-G solvation = -34.738129 kcal Electronic energy + Delta-G solvation = -23442.671180 eV Core-core repulsion = 19693.820971 eV Total energy + Delta-G solvation = -3748.850208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.69212 -40.68283 -39.31497 -38.17262 -36.67760 -35.72072 -33.73018 -32.91141 -30.65264 -29.53877 -28.44305 -26.39632 -26.05680 -23.49874 -22.34651 -21.88807 -20.85569 -19.75948 -19.09939 -18.31624 -18.11121 -17.42161 -16.99350 -16.83782 -16.30266 -15.92057 -15.62232 -15.49753 -14.92624 -14.86501 -14.48261 -14.29700 -13.99579 -13.79017 -13.61089 -13.17305 -13.15935 -12.80629 -12.77803 -12.75279 -12.71075 -12.55058 -12.05450 -11.88635 -11.55700 -11.38506 -11.11400 -10.89405 -10.82364 -10.77787 -10.34433 -9.93784 -8.96980 -7.89001 -5.25683 -1.15979 -0.60188 0.15318 0.56399 1.07118 1.46657 1.47920 1.57940 1.79323 1.89586 2.47532 3.09826 3.12966 3.32117 3.48651 3.53555 3.78446 3.89365 4.02773 4.16459 4.42315 4.43381 4.52200 4.67864 4.75903 4.82408 4.90384 5.21120 5.32716 5.38295 5.44578 5.66652 6.12430 6.13578 6.29168 6.86477 6.93489 7.04953 7.68921 8.31204 9.21138 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.023067 B = 0.002694 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.573269 B =10391.203317 C =10778.112751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.156 3.844 3 N -0.484 5.484 4 C 0.070 3.930 5 Cl 0.054 6.946 6 S 0.312 5.688 7 C -0.316 4.316 8 C 0.598 3.402 9 O -0.546 6.546 10 N -0.696 5.696 11 C 0.155 3.845 12 H 0.080 0.920 13 C 0.130 3.870 14 N -0.622 5.622 15 C -0.245 4.245 16 H 0.081 0.919 17 C -0.061 4.061 18 N -0.947 5.947 19 Si 0.979 3.021 20 H -0.268 1.268 21 H -0.293 1.293 22 H -0.288 1.288 23 C 0.160 3.840 24 C 0.092 3.908 25 H 0.096 0.904 26 O -0.568 6.568 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.411 0.589 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.249 0.751 34 H 0.023 0.977 35 H 0.028 0.972 36 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.994 21.481 -4.297 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.017 3.983 3 N -0.202 5.202 4 C -0.229 4.229 5 Cl 0.082 6.918 6 S 0.565 5.435 7 C -0.440 4.440 8 C 0.384 3.616 9 O -0.425 6.425 10 N -0.347 5.347 11 C 0.049 3.951 12 H 0.098 0.902 13 C 0.004 3.996 14 N -0.349 5.349 15 C -0.373 4.373 16 H 0.099 0.901 17 C -0.254 4.254 18 N -0.596 5.596 19 Si 0.807 3.193 20 H -0.193 1.193 21 H -0.220 1.220 22 H -0.215 1.215 23 C 0.035 3.965 24 C 0.031 3.969 25 H 0.114 0.886 26 O -0.375 6.375 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.248 0.752 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.587 21.719 -4.220 23.733 hybrid contribution -0.425 -1.064 0.506 1.252 sum 8.162 20.655 -3.714 22.518 Atomic orbital electron populations 1.20700 0.84927 1.04747 1.04409 1.20639 0.99200 0.84167 0.94290 1.65852 1.04144 1.32275 1.17961 1.27665 0.93159 0.96592 1.05509 1.98462 1.53471 1.43793 1.96121 1.83690 1.01245 0.95312 1.63220 1.25541 0.98424 0.98269 1.21807 1.16778 0.85932 0.82830 0.76022 1.90819 1.15537 1.85247 1.50921 1.45560 1.09928 1.04663 1.74570 1.21829 0.97150 0.79515 0.96583 0.90156 1.21928 0.99228 0.84190 0.94280 1.44568 1.58300 1.00553 1.31526 1.19458 1.24433 0.87432 1.06025 0.90070 1.25619 1.01144 0.98298 1.00333 1.70114 1.44336 1.12509 1.32628 0.85007 0.77509 0.78682 0.78089 1.19252 1.21971 1.21480 1.21681 0.93812 0.92604 0.88436 1.23129 0.97829 0.94391 0.81534 0.88636 1.86429 1.63670 1.67916 1.19524 0.89241 0.89091 0.89225 0.75237 0.94068 0.94375 0.94139 0.95889 0.95364 0.75183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.97 9.69 71.23 0.69 -1.28 16 2 C 0.16 3.69 6.79 42.09 0.29 3.98 16 3 N -0.48 -10.93 10.51 -181.21 -1.90 -12.83 16 4 C 0.07 1.28 8.03 130.57 1.05 2.33 16 5 Cl 0.05 0.76 29.33 -2.72 -0.08 0.68 16 6 S 0.31 4.82 22.35 -56.49 -1.26 3.56 16 7 C -0.32 -7.35 6.48 23.85 0.15 -7.19 16 8 C 0.60 17.35 7.77 86.42 0.67 18.02 16 9 O -0.55 -19.62 14.01 -4.34 -0.06 -19.69 16 10 N -0.70 -18.82 5.23 -440.00 -2.30 -21.12 16 11 C 0.16 5.48 3.04 46.38 0.14 5.62 16 12 H 0.08 3.32 7.73 -2.38 -0.02 3.30 16 13 C 0.13 5.37 6.92 86.85 0.60 5.97 16 14 N -0.62 -31.43 3.40 -691.30 -2.35 -33.79 16 15 C -0.24 -13.63 10.28 84.03 0.86 -12.77 16 16 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 17 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 18 N -0.95 -55.12 10.34 21.65 0.22 -54.89 16 19 Si 0.98 45.23 29.55 68.60 2.03 47.26 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 C 0.16 7.44 5.16 86.68 0.45 7.89 16 24 C 0.09 3.07 3.95 31.78 0.13 3.19 16 25 H 0.10 2.56 8.00 -2.39 -0.02 2.54 16 26 O -0.57 -17.50 13.40 -148.98 -2.00 -19.50 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.09 2.31 6.01 -2.39 -0.01 2.30 16 30 H 0.41 8.28 7.70 -92.71 -0.71 7.56 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 34 H 0.02 1.23 7.31 -2.38 -0.02 1.21 16 35 H 0.03 1.42 7.52 -2.39 -0.02 1.40 16 36 H 0.40 8.83 9.12 -74.06 -0.68 8.15 16 Total: -1.00 -70.55 335.11 -2.44 -72.98 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -0.23 Total: 14.48 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 5.50 Total: 22.84 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -6.33 Total: -122.63 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -2.06 Total: -39.18 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.26 Total: 3.56 kcal Atomic # 17 Polarization: 0.76 SS G_CDS: -0.08 Total: 0.68 kcal Total: -70.55 -2.44 -72.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077065460.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.246 kcal (2) G-P(sol) polarization free energy of solvation -70.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds