Wall clock time and date at job start Tue Mar 31 2020 17:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 110.88458 * 2 1 4 4 C 1.54907 * 111.00490 * 236.11336 * 2 1 3 5 5 N 1.47426 * 104.83283 * 204.91900 * 4 2 1 6 6 C 1.36929 * 125.64878 * 204.09714 * 5 4 2 7 7 H 1.08001 * 120.00163 * 6.04078 * 6 5 4 8 8 C 1.38816 * 120.00010 * 186.05116 * 6 5 4 9 9 N 1.31619 * 119.99678 * 353.14196 * 8 6 5 10 10 Si 1.86800 * 120.00295 * 173.15192 * 8 6 5 11 11 H 1.48505 * 109.46892 * 275.00716 * 10 8 6 12 12 H 1.48503 * 109.46971 * 35.00302 * 10 8 6 13 13 H 1.48489 * 109.47387 * 155.00605 * 10 8 6 14 14 C 1.47026 * 108.70065 * 24.35720 * 5 4 2 15 15 C 1.54335 * 107.26569 * 358.58838 * 14 5 4 16 16 H 1.08997 * 110.51440 * 96.45292 * 15 14 5 17 17 N 1.46508 * 110.84645 * 219.67246 * 15 14 5 18 18 C 1.34779 * 119.99731 * 268.69009 * 17 15 14 19 19 O 1.21714 * 119.99934 * 0.02562 * 18 17 15 20 20 C 1.46543 * 119.99727 * 179.97438 * 18 17 15 21 21 C 1.37955 * 126.22005 * 179.68764 * 20 18 17 22 22 C 1.39794 * 107.12453 * 179.90636 * 21 20 18 23 23 Cl 1.73608 * 126.06078 * 180.14031 * 22 21 20 24 24 C 1.35714 * 107.87635 * 0.36516 * 22 21 20 25 25 Cl 1.73605 * 125.58532 * 179.81233 * 24 22 21 26 26 N 1.35659 * 108.83100 * 359.77378 * 24 22 21 27 27 H 0.97000 * 125.69576 * 180.02562 * 26 24 22 28 28 H 1.08997 * 109.47297 * 182.42658 * 1 2 3 29 29 H 1.09000 * 109.47723 * 302.42947 * 1 2 3 30 30 H 1.09000 * 109.46895 * 62.42790 * 1 2 3 31 31 H 1.08999 * 110.36569 * 86.08296 * 4 2 1 32 32 H 1.08999 * 110.46347 * 323.80247 * 4 2 1 33 33 H 0.97008 * 119.99739 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.88107 * 118.13295 * 14 5 4 35 35 H 1.09000 * 109.88260 * 239.29553 * 14 5 4 36 36 H 0.96995 * 120.00093 * 88.69207 * 17 15 14 37 37 H 1.07997 * 126.44142 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0183 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4271 -1.2429 -0.7736 6 6 4.4640 -1.5662 -1.6075 7 1 4.3664 -1.4186 -2.6729 8 6 5.6406 -2.0840 -1.0835 9 7 5.8123 -2.1385 0.2203 10 14 6.9802 -2.7031 -2.2286 11 1 6.6964 -4.1108 -2.6070 12 1 7.0157 -1.8596 -3.4504 13 1 8.2933 -2.6310 -1.5390 14 6 3.4656 -1.2797 0.6957 15 6 2.0860 -0.8084 1.2020 16 1 1.4467 -1.6637 1.4205 17 7 2.2285 0.0488 2.3816 18 6 2.2002 -0.4928 3.6155 19 8 2.0567 -1.6939 3.7497 20 6 2.3433 0.3645 4.7953 21 6 2.3271 -0.0501 6.1110 22 6 2.4976 1.0888 6.9036 23 17 2.5557 1.1272 8.6383 24 6 2.6046 2.1596 6.0767 25 17 2.8247 3.8065 6.5799 26 7 2.5123 1.7321 4.7925 27 1 2.5580 2.2951 4.0040 28 1 -0.3634 -1.0267 0.0435 29 1 -0.3634 0.5511 0.8674 30 1 -0.3633 0.4757 -0.9110 31 1 2.1561 -0.1714 -2.0836 32 1 1.4525 -1.6700 -1.4048 33 1 6.6343 -2.5007 0.5866 34 1 3.6600 -2.2968 1.0361 35 1 4.2423 -0.6089 1.0631 36 1 2.3432 1.0060 2.2746 37 1 2.2074 -1.0642 6.4626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080222163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:15 Heat of formation + Delta-G solvation = 21.756734 kcal Electronic energy + Delta-G solvation = -23493.453275 eV Core-core repulsion = 19745.009162 eV Total energy + Delta-G solvation = -3748.444114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.70825 -39.35982 -37.55577 -37.09313 -36.66974 -34.12451 -32.79270 -31.38310 -30.44837 -29.66065 -27.65668 -25.70695 -24.09569 -22.75571 -21.19019 -20.67747 -20.29504 -19.96562 -18.85024 -16.97802 -16.43877 -15.96070 -15.61676 -15.06500 -14.96831 -14.24086 -14.21661 -13.96709 -13.72572 -13.51694 -13.24396 -12.88246 -12.78140 -12.18911 -12.15280 -11.95196 -11.78354 -11.73202 -11.44135 -11.12357 -11.09905 -10.81719 -10.76475 -10.49132 -10.09979 -10.01785 -9.95226 -9.75144 -9.27593 -8.77213 -8.62379 -8.44168 -6.88766 -5.75314 -3.09589 1.02062 1.15787 1.86666 2.00483 2.89553 3.23459 3.34711 3.38873 3.43783 3.45705 4.46540 4.57353 4.68500 4.96190 5.17559 5.23103 5.33121 5.40968 5.48225 5.66112 5.86842 5.88511 5.95704 6.05197 6.08995 6.18497 6.24038 6.38604 6.54374 6.56459 6.64842 6.83236 7.42332 7.50869 7.67621 7.78351 8.19427 8.26578 9.16395 9.77390 10.42000 11.35948 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.002921 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.794825 B = 9584.107874 C =10245.217656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.605 5.605 6 C -0.234 4.234 7 H 0.079 0.921 8 C -0.005 4.005 9 N -0.917 5.917 10 Si 0.911 3.089 11 H -0.287 1.287 12 H -0.282 1.282 13 H -0.291 1.291 14 C 0.172 3.828 15 C 0.120 3.880 16 H 0.094 0.906 17 N -0.708 5.708 18 C 0.588 3.412 19 O -0.514 6.514 20 C -0.004 4.004 21 C -0.091 4.091 22 C -0.097 4.097 23 Cl -0.031 7.031 24 C 0.094 3.906 25 Cl 0.000 7.000 26 N -0.521 5.521 27 H 0.427 0.573 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.024 0.976 33 H 0.254 0.746 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.390 0.610 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.195 12.067 12.015 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.332 5.332 6 C -0.362 4.362 7 H 0.097 0.903 8 C -0.202 4.202 9 N -0.564 5.564 10 Si 0.741 3.259 11 H -0.214 1.214 12 H -0.208 1.208 13 H -0.217 1.217 14 C 0.046 3.954 15 C 0.016 3.984 16 H 0.112 0.888 17 N -0.357 5.357 18 C 0.373 3.627 19 O -0.389 6.389 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.132 4.132 23 Cl -0.002 7.002 24 C -0.050 4.050 25 Cl 0.029 6.971 26 N -0.123 5.123 27 H 0.267 0.733 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.223 0.777 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.041 11.303 12.138 19.388 hybrid contribution 1.013 0.744 -0.756 1.467 sum -9.028 12.047 11.382 18.873 Atomic orbital electron populations 1.21702 0.94894 1.01924 1.01014 1.22626 0.94942 0.99407 0.96407 0.90582 1.21580 0.87658 0.95141 0.94192 1.44385 1.07653 1.79540 1.01643 1.19019 0.91884 1.35916 0.89410 0.90302 1.24847 0.98259 1.01062 0.96009 1.69964 1.26508 1.50382 1.09500 0.86164 0.81108 0.79065 0.79565 1.21422 1.20759 1.21712 1.21500 0.89749 1.00548 0.83561 1.22612 1.00739 0.92732 0.82347 0.88773 1.45818 1.73523 1.10670 1.05720 1.16758 0.77564 0.86947 0.81474 1.90901 1.49191 1.13326 1.85443 1.20667 1.14020 0.81041 0.96093 1.21154 1.02762 0.98864 0.88974 1.19588 1.15011 0.92654 0.85942 1.98346 1.97384 1.98608 1.05905 1.20527 1.12277 0.87438 0.84788 1.98422 1.95692 1.13954 1.89048 1.41905 1.56078 1.07738 1.06546 0.73272 0.92436 0.93226 0.92642 0.93948 0.95854 0.93604 0.92920 0.93506 0.77717 0.81407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.30 37.16 0.35 -1.34 16 2 C -0.11 -1.75 3.27 -88.47 -0.29 -2.04 16 3 H 0.08 1.10 8.01 -51.93 -0.42 0.68 16 4 C 0.14 2.73 6.70 -2.53 -0.02 2.71 16 5 N -0.61 -14.99 3.39 -170.06 -0.58 -15.56 16 6 C -0.23 -6.41 10.26 -15.06 -0.15 -6.57 16 7 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 8 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 9 N -0.92 -26.95 10.36 55.49 0.57 -26.37 16 10 Si 0.91 21.96 29.56 -169.99 -5.02 16.94 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 14 C 0.17 4.09 5.14 -3.06 -0.02 4.08 16 15 C 0.12 2.14 2.78 -66.08 -0.18 1.95 16 16 H 0.09 1.79 7.42 -51.93 -0.39 1.40 16 17 N -0.71 -10.30 5.10 -53.36 -0.27 -10.58 16 18 C 0.59 9.25 7.78 -12.91 -0.10 9.15 16 19 O -0.51 -10.13 16.53 5.18 0.09 -10.05 16 20 C 0.00 -0.05 7.06 -81.94 -0.58 -0.63 16 21 C -0.09 -1.14 10.64 -39.10 -0.42 -1.56 16 22 C -0.10 -1.11 6.66 -39.90 -0.27 -1.37 16 23 Cl -0.03 -0.32 29.12 -51.86 -1.51 -1.83 16 24 C 0.09 0.97 7.75 -16.76 -0.13 0.84 16 25 Cl 0.00 0.00 29.13 -51.86 -1.51 -1.51 16 26 N -0.52 -5.13 6.00 -6.51 -0.04 -5.17 16 27 H 0.43 3.02 8.19 -40.82 -0.33 2.68 16 28 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 33 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.05 1.47 7.39 -51.93 -0.38 1.09 16 35 H 0.05 1.22 7.41 -51.93 -0.38 0.84 16 36 H 0.39 4.38 7.69 -40.82 -0.31 4.07 16 37 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -32.09 344.22 -9.28 -41.37 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.29 Total: 2.59 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.90 Total: 4.99 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.31 Total: -57.68 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -3.02 Total: -3.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.09 -9.28 -41.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080222163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.124 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds