Wall clock time and date at job start Tue Mar 31 2020 17:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 110.88458 * 2 1 4 4 C 1.54907 * 111.00490 * 236.11336 * 2 1 3 5 5 N 1.47426 * 104.83283 * 204.91900 * 4 2 1 6 6 C 1.36929 * 125.64878 * 204.09714 * 5 4 2 7 7 H 1.08001 * 120.00163 * 6.04078 * 6 5 4 8 8 C 1.38816 * 120.00010 * 186.05116 * 6 5 4 9 9 N 1.31619 * 119.99678 * 353.14196 * 8 6 5 10 10 Si 1.86800 * 120.00295 * 173.15192 * 8 6 5 11 11 H 1.48505 * 109.46892 * 275.00716 * 10 8 6 12 12 H 1.48503 * 109.46971 * 35.00302 * 10 8 6 13 13 H 1.48489 * 109.47387 * 155.00605 * 10 8 6 14 14 C 1.47026 * 108.70065 * 24.35720 * 5 4 2 15 15 C 1.54335 * 107.26569 * 358.58838 * 14 5 4 16 16 H 1.08997 * 110.51440 * 96.45292 * 15 14 5 17 17 N 1.46508 * 110.84645 * 219.67246 * 15 14 5 18 18 C 1.34779 * 119.99731 * 268.69009 * 17 15 14 19 19 O 1.21714 * 119.99934 * 0.02562 * 18 17 15 20 20 C 1.46543 * 119.99727 * 179.97438 * 18 17 15 21 21 C 1.37955 * 126.22005 * 179.68764 * 20 18 17 22 22 C 1.39794 * 107.12453 * 179.90636 * 21 20 18 23 23 Cl 1.73608 * 126.06078 * 180.14031 * 22 21 20 24 24 C 1.35714 * 107.87635 * 0.36516 * 22 21 20 25 25 Cl 1.73605 * 125.58532 * 179.81233 * 24 22 21 26 26 N 1.35659 * 108.83100 * 359.77378 * 24 22 21 27 27 H 0.97000 * 125.69576 * 180.02562 * 26 24 22 28 28 H 1.08997 * 109.47297 * 182.42658 * 1 2 3 29 29 H 1.09000 * 109.47723 * 302.42947 * 1 2 3 30 30 H 1.09000 * 109.46895 * 62.42790 * 1 2 3 31 31 H 1.08999 * 110.36569 * 86.08296 * 4 2 1 32 32 H 1.08999 * 110.46347 * 323.80247 * 4 2 1 33 33 H 0.97008 * 119.99739 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.88107 * 118.13295 * 14 5 4 35 35 H 1.09000 * 109.88260 * 239.29553 * 14 5 4 36 36 H 0.96995 * 120.00093 * 88.69207 * 17 15 14 37 37 H 1.07997 * 126.44142 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0183 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4271 -1.2429 -0.7736 6 6 4.4640 -1.5662 -1.6075 7 1 4.3664 -1.4186 -2.6729 8 6 5.6406 -2.0840 -1.0835 9 7 5.8123 -2.1385 0.2203 10 14 6.9802 -2.7031 -2.2286 11 1 6.6964 -4.1108 -2.6070 12 1 7.0157 -1.8596 -3.4504 13 1 8.2933 -2.6310 -1.5390 14 6 3.4656 -1.2797 0.6957 15 6 2.0860 -0.8084 1.2020 16 1 1.4467 -1.6637 1.4205 17 7 2.2285 0.0488 2.3816 18 6 2.2002 -0.4928 3.6155 19 8 2.0567 -1.6939 3.7497 20 6 2.3433 0.3645 4.7953 21 6 2.3271 -0.0501 6.1110 22 6 2.4976 1.0888 6.9036 23 17 2.5557 1.1272 8.6383 24 6 2.6046 2.1596 6.0767 25 17 2.8247 3.8065 6.5799 26 7 2.5123 1.7321 4.7925 27 1 2.5580 2.2951 4.0040 28 1 -0.3634 -1.0267 0.0435 29 1 -0.3634 0.5511 0.8674 30 1 -0.3633 0.4757 -0.9110 31 1 2.1561 -0.1714 -2.0836 32 1 1.4525 -1.6700 -1.4048 33 1 6.6343 -2.5007 0.5866 34 1 3.6600 -2.2968 1.0361 35 1 4.2423 -0.6089 1.0631 36 1 2.3432 1.0060 2.2746 37 1 2.2074 -1.0642 6.4626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080222163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:13 Heat of formation + Delta-G solvation = 0.218785 kcal Electronic energy + Delta-G solvation = -23494.387231 eV Core-core repulsion = 19745.009162 eV Total energy + Delta-G solvation = -3749.378069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -42.67005 -40.71289 -39.06225 -37.91674 -37.52607 -35.74143 -34.40109 -32.34566 -32.16772 -30.80600 -29.19718 -27.37042 -25.60573 -24.06935 -22.31488 -21.88439 -21.59542 -21.38338 -20.01199 -18.90412 -17.59340 -17.35726 -16.92769 -16.57640 -15.98482 -15.70668 -15.50255 -15.35279 -14.98982 -14.72115 -14.48835 -14.35962 -14.08270 -13.70887 -13.35161 -13.07154 -13.00555 -12.91302 -12.87699 -12.60721 -12.50035 -12.21757 -12.12127 -11.98555 -11.86185 -11.69027 -11.49947 -11.30552 -10.73177 -10.23835 -10.12682 -9.39982 -8.92442 -7.87214 -5.23133 0.01655 0.29678 1.00736 1.05064 1.44448 1.47725 1.55111 1.84170 2.13274 2.19389 2.48870 3.32052 3.50015 3.65340 3.72527 3.77973 4.02502 4.08078 4.20384 4.45487 4.48439 4.60330 4.71061 4.88224 4.98807 5.03689 5.08161 5.09667 5.21670 5.26973 5.45689 5.49584 5.59041 5.74239 5.86573 6.15946 6.40455 7.01415 7.07925 7.75107 8.38713 9.22449 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.002921 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.794825 B = 9584.107874 C =10245.217656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 H 0.095 0.905 4 C 0.131 3.869 5 N -0.627 5.627 6 C -0.243 4.243 7 H 0.088 0.912 8 C -0.066 4.066 9 N -0.950 5.950 10 Si 0.976 3.024 11 H -0.288 1.288 12 H -0.264 1.264 13 H -0.297 1.297 14 C 0.186 3.814 15 C 0.137 3.863 16 H 0.081 0.919 17 N -0.695 5.695 18 C 0.590 3.410 19 O -0.561 6.561 20 C -0.018 4.018 21 C -0.094 4.094 22 C -0.110 4.110 23 Cl -0.023 7.023 24 C 0.108 3.892 25 Cl 0.022 6.978 26 N -0.505 5.505 27 H 0.441 0.559 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.026 0.974 33 H 0.245 0.755 34 H -0.004 1.004 35 H 0.016 0.984 36 H 0.409 0.591 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.431 14.544 11.592 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 H 0.113 0.887 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.372 4.372 7 H 0.106 0.894 8 C -0.259 4.259 9 N -0.598 5.598 10 Si 0.804 3.196 11 H -0.215 1.215 12 H -0.189 1.189 13 H -0.224 1.224 14 C 0.059 3.941 15 C 0.031 3.969 16 H 0.099 0.901 17 N -0.346 5.346 18 C 0.377 3.623 19 O -0.440 6.440 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.145 4.145 23 Cl 0.006 6.994 24 C -0.037 4.037 25 Cl 0.051 6.949 26 N -0.107 5.107 27 H 0.284 0.716 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.014 0.986 35 H 0.034 0.966 36 H 0.246 0.754 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.314 13.850 11.671 21.355 hybrid contribution 1.384 0.031 -0.582 1.502 sum -9.930 13.881 11.089 20.353 Atomic orbital electron populations 1.21662 0.91664 1.02278 1.03147 1.22548 0.97306 0.98965 0.92446 0.88720 1.21862 0.85206 0.95888 0.96406 1.44694 1.09267 1.79503 1.01913 1.19472 0.92567 1.34822 0.90290 0.89413 1.25697 1.00867 1.01997 0.97371 1.70214 1.26589 1.51728 1.11319 0.85127 0.77885 0.78405 0.78136 1.21469 1.18894 1.22391 1.21140 0.92504 0.96831 0.83607 1.22150 0.96791 0.93647 0.84304 0.90055 1.45568 1.73062 1.11326 1.04599 1.17076 0.76328 0.86652 0.82258 1.90877 1.51357 1.15537 1.86180 1.20047 1.16376 0.82011 0.94806 1.21267 1.02203 0.99345 0.89240 1.19624 1.15720 0.92579 0.86547 1.98347 1.97387 1.98580 1.05130 1.20632 1.10255 0.88234 0.84615 1.98440 1.95455 1.12177 1.88843 1.41776 1.55074 1.06739 1.07128 0.71586 0.93060 0.91148 0.90429 0.92624 0.95630 0.94623 0.98619 0.96617 0.75434 0.81671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.30 71.98 0.67 -2.05 16 2 C -0.09 -2.66 3.27 -9.40 -0.03 -2.69 16 3 H 0.09 2.40 8.01 -2.39 -0.02 2.39 16 4 C 0.13 4.93 6.70 86.85 0.58 5.51 16 5 N -0.63 -31.55 3.39 -691.95 -2.35 -33.90 16 6 C -0.24 -13.45 10.26 84.04 0.86 -12.58 16 7 H 0.09 4.58 7.84 -2.91 -0.02 4.55 16 8 C -0.07 -3.80 5.48 84.86 0.47 -3.33 16 9 N -0.95 -58.44 10.36 21.65 0.22 -58.21 16 10 Si 0.98 45.98 29.56 68.60 2.03 48.01 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 14 C 0.19 9.22 5.14 86.73 0.45 9.67 16 15 C 0.14 4.89 2.78 46.18 0.13 5.01 16 16 H 0.08 3.16 7.42 -2.39 -0.02 3.14 16 17 N -0.70 -19.87 5.10 -440.95 -2.25 -22.12 16 18 C 0.59 18.76 7.78 86.41 0.67 19.44 16 19 O -0.56 -23.11 16.53 -4.39 -0.07 -23.18 16 20 C -0.02 -0.45 7.06 40.30 0.28 -0.17 16 21 C -0.09 -2.32 10.64 22.58 0.24 -2.08 16 22 C -0.11 -2.37 6.66 22.06 0.15 -2.23 16 23 Cl -0.02 -0.45 29.12 -2.72 -0.08 -0.53 16 24 C 0.11 2.03 7.75 83.52 0.65 2.67 16 25 Cl 0.02 0.34 29.13 -2.72 -0.08 0.26 16 26 N -0.50 -8.97 6.00 -174.52 -1.05 -10.02 16 27 H 0.44 5.08 8.19 -92.71 -0.76 4.32 16 28 H 0.05 1.16 8.11 -2.39 -0.02 1.14 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.03 0.97 8.04 -2.39 -0.02 0.95 16 33 H 0.24 14.81 8.31 -92.70 -0.77 14.03 16 34 H 0.00 -0.27 7.39 -2.38 -0.02 -0.29 16 35 H 0.02 0.86 7.41 -2.39 -0.02 0.84 16 36 H 0.41 8.41 7.69 -92.71 -0.71 7.70 16 37 H 0.17 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -73.46 344.22 1.15 -72.31 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -0.34 Total: 10.21 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 5.11 Total: 17.18 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -5.42 Total: -124.26 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.07 Total: -23.18 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.16 Total: -0.27 kcal Total: -73.46 1.15 -72.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080222163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.527 kcal (2) G-P(sol) polarization free energy of solvation -73.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds