Wall clock time and date at job start Tue Mar 31 2020 17:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99340 * 2 1 4 4 H 1.08995 * 110.88771 * 32.42127 * 3 2 1 5 5 C 1.54908 * 111.00012 * 268.53822 * 3 2 1 6 6 N 1.47428 * 104.83227 * 204.88185 * 5 3 2 7 7 C 1.36941 * 125.64909 * 204.09617 * 6 5 3 8 8 H 1.07995 * 119.99875 * 161.60398 * 7 6 5 9 9 C 1.38810 * 119.99503 * 341.87555 * 7 6 5 10 10 N 1.31629 * 119.99355 * 157.37640 * 9 7 6 11 11 Si 1.86799 * 120.00459 * 337.37591 * 9 7 6 12 12 H 1.48494 * 109.46913 * 84.54348 * 11 9 7 13 13 H 1.48500 * 109.47150 * 204.54188 * 11 9 7 14 14 H 1.48499 * 109.46865 * 324.54018 * 11 9 7 15 15 C 1.47019 * 108.70184 * 24.35984 * 6 5 3 16 16 C 1.54336 * 107.26594 * 358.58350 * 15 6 5 17 17 H 1.09002 * 110.51587 * 96.45419 * 16 15 6 18 18 N 1.46499 * 111.00299 * 219.60224 * 16 15 6 19 19 C 1.34775 * 120.00341 * 268.78264 * 18 16 15 20 20 O 1.21637 * 119.99745 * 0.02562 * 19 18 16 21 21 C 1.47145 * 120.00407 * 179.97438 * 19 18 16 22 22 N 1.30572 * 125.52772 * 179.97438 * 21 19 18 23 23 C 1.30659 * 115.92759 * 180.02562 * 22 21 19 24 24 C 1.34441 * 115.74443 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 125.46397 * 180.02562 * 24 23 22 26 26 S 1.71071 * 109.07125 * 359.72401 * 24 23 22 27 27 H 1.08998 * 109.46926 * 60.01142 * 1 2 3 28 28 H 1.09004 * 109.46734 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47618 * 300.00255 * 1 2 3 30 30 H 1.09004 * 110.36659 * 86.04613 * 5 3 2 31 31 H 1.08996 * 110.37108 * 323.72429 * 5 3 2 32 32 H 0.97005 * 119.99622 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.88482 * 118.13236 * 15 6 5 34 34 H 1.09003 * 109.87966 * 239.29844 * 15 6 5 35 35 H 0.97006 * 119.99810 * 88.77930 * 18 16 15 36 36 H 1.07995 * 122.12928 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3828 2.0101 0.5460 5 6 2.2696 1.7977 -1.4457 6 7 3.3604 2.7814 -1.3195 7 6 3.6225 3.7996 -2.1969 8 1 4.2337 4.6347 -1.8881 9 6 3.0978 3.7610 -3.4814 10 7 2.9538 4.8753 -4.1672 11 14 2.5962 2.1279 -4.2369 12 1 1.2168 1.7862 -3.8061 13 1 2.6406 2.2330 -5.7175 14 1 3.5325 1.0664 -3.7877 15 6 4.1242 2.4843 -0.0989 16 6 3.4483 1.2750 0.5814 17 1 3.9555 0.3499 0.3074 18 7 3.4225 1.4382 2.0371 19 6 4.4336 0.9572 2.7872 20 8 5.3679 0.3881 2.2555 21 6 4.4080 1.1216 4.2492 22 7 5.3258 0.6995 5.0764 23 6 5.1122 0.9469 6.3415 24 6 3.9736 1.6037 6.6239 25 17 3.4417 2.0605 8.2120 26 16 3.1373 1.9247 5.1665 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.3759 2.2723 -1.8510 31 1 2.5794 0.9669 -2.0795 32 1 2.5875 4.8483 -5.0650 33 1 5.1545 2.2391 -0.3567 34 1 4.1020 3.3441 0.5708 35 1 2.6776 1.8925 2.4610 36 1 5.8060 0.6431 7.1113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081941684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:41 Heat of formation + Delta-G solvation = 8.157132 kcal Electronic energy + Delta-G solvation = -23517.605227 eV Core-core repulsion = 19770.615097 eV Total energy + Delta-G solvation = -3746.990130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.61314 -39.66592 -38.39169 -37.40717 -36.29842 -34.44467 -32.14407 -30.86347 -29.37195 -28.12212 -26.56054 -26.42001 -24.25947 -22.46497 -21.41862 -20.32638 -20.21727 -19.45255 -17.66222 -16.96075 -16.93406 -16.19355 -16.05635 -15.77659 -15.14250 -14.72201 -14.58481 -14.44771 -14.31784 -14.23152 -13.66459 -13.05136 -12.96041 -12.78886 -12.58469 -12.19737 -12.12975 -11.60043 -11.50870 -11.43508 -11.25703 -10.87398 -10.71812 -10.51821 -10.13987 -10.03060 -9.99132 -9.59694 -9.51012 -9.40119 -9.12334 -8.72347 -7.17131 -6.01938 -3.34504 -0.38961 0.21068 0.88680 1.50352 1.87455 2.53545 2.90707 3.28941 3.45728 3.49552 3.71875 4.02008 4.37174 4.48198 4.58447 4.74732 5.00814 5.07452 5.19748 5.31061 5.34963 5.36413 5.46797 5.59175 5.68995 5.75785 6.03919 6.28423 6.41108 6.48403 6.58329 6.90583 7.23283 7.25632 7.57933 7.86930 8.22970 8.73333 9.59533 10.03301 11.13475 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.002917 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.125752 B = 9597.172966 C = 9930.948768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.068 3.932 4 H 0.079 0.921 5 C 0.096 3.904 6 N -0.603 5.603 7 C -0.245 4.245 8 H 0.096 0.904 9 C 0.025 3.975 10 N -0.905 5.905 11 Si 0.880 3.120 12 H -0.285 1.285 13 H -0.300 1.300 14 H -0.273 1.273 15 C 0.128 3.872 16 C 0.138 3.862 17 H 0.114 0.886 18 N -0.704 5.704 19 C 0.595 3.405 20 O -0.487 6.487 21 C 0.011 3.989 22 N -0.389 5.389 23 C 0.049 3.951 24 C -0.205 4.205 25 Cl 0.015 6.985 26 S 0.230 5.770 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.397 0.603 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 -7.086 23.188 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.008 3.992 4 H 0.097 0.903 5 C -0.031 4.031 6 N -0.331 5.331 7 C -0.371 4.371 8 H 0.114 0.886 9 C -0.174 4.174 10 N -0.548 5.548 11 Si 0.710 3.290 12 H -0.213 1.213 13 H -0.228 1.228 14 H -0.199 1.199 15 C 0.001 3.999 16 C 0.034 3.966 17 H 0.132 0.868 18 N -0.356 5.356 19 C 0.375 3.625 20 O -0.359 6.359 21 C -0.265 4.265 22 N -0.105 5.105 23 C -0.110 4.110 24 C -0.355 4.355 25 Cl 0.044 6.956 26 S 0.484 5.516 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.232 0.768 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.710 -7.256 22.198 23.825 hybrid contribution -0.306 -0.632 0.696 0.989 sum -5.017 -7.889 22.895 24.730 Atomic orbital electron populations 1.22788 0.81089 1.02555 1.00200 1.87902 1.19659 1.27044 1.94992 1.23653 0.93022 0.84501 0.98010 0.90270 1.22390 0.93521 0.93453 0.93698 1.44601 1.29258 1.33724 1.25555 1.18631 1.31379 0.95954 0.91166 0.88632 1.25000 0.99344 0.96800 0.96278 1.69841 1.46918 1.25405 1.12605 0.87042 0.78432 0.85718 0.77836 1.21251 1.22808 1.19864 1.21724 0.95482 0.93554 0.89107 1.22246 0.96126 1.01552 0.76650 0.86781 1.45729 1.23022 1.58953 1.07923 1.16554 0.83424 0.79908 0.82594 1.90907 1.33300 1.40395 1.71289 1.27673 0.94989 1.04627 0.99197 1.66796 1.25737 1.16776 1.01143 1.21985 0.96293 0.99517 0.93227 1.26590 1.02649 1.11330 0.94932 1.98403 1.89031 1.90578 1.17623 1.84039 1.22590 1.50299 0.94682 0.93661 0.89738 0.94124 0.91534 0.94082 0.92560 0.93429 0.93943 0.76829 0.79381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.89 101.05 1.10 1.45 16 2 O -0.38 -5.80 10.52 -35.23 -0.37 -6.17 16 3 C 0.07 1.09 3.12 -24.58 -0.08 1.01 16 4 H 0.08 1.10 7.77 -51.93 -0.40 0.69 16 5 C 0.10 1.99 4.42 -2.53 -0.01 1.98 16 6 N -0.60 -14.05 3.21 -170.07 -0.55 -14.59 16 7 C -0.24 -6.73 10.57 -15.06 -0.16 -6.89 16 8 H 0.10 2.78 8.06 -52.49 -0.42 2.36 16 9 C 0.02 0.71 5.43 -17.43 -0.09 0.61 16 10 N -0.90 -27.23 13.97 55.49 0.78 -26.46 16 11 Si 0.88 22.14 24.27 -169.99 -4.13 18.02 16 12 H -0.29 -6.81 6.48 56.52 0.37 -6.44 16 13 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 14 H -0.27 -6.89 6.66 56.52 0.38 -6.52 16 15 C 0.13 2.48 7.01 -3.06 -0.02 2.46 16 16 C 0.14 2.26 3.04 -66.09 -0.20 2.06 16 17 H 0.11 2.04 7.55 -51.93 -0.39 1.64 16 18 N -0.70 -9.20 5.11 -53.18 -0.27 -9.47 16 19 C 0.59 8.66 7.80 -12.65 -0.10 8.56 16 20 O -0.49 -9.03 16.71 5.24 0.09 -8.94 16 21 C 0.01 0.14 7.45 -14.47 -0.11 0.03 16 22 N -0.39 -4.94 10.59 -11.50 -0.12 -5.06 16 23 C 0.05 0.46 11.21 -19.39 -0.22 0.25 16 24 C -0.21 -1.72 6.95 29.39 0.20 -1.52 16 25 Cl 0.02 0.11 29.30 -51.86 -1.52 -1.41 16 26 S 0.23 1.90 22.30 -107.50 -2.40 -0.50 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.38 8.11 -51.93 -0.42 -0.04 16 30 H 0.07 1.45 6.61 -51.93 -0.34 1.10 16 31 H 0.04 0.93 5.59 -51.93 -0.29 0.64 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.78 8.03 -51.93 -0.42 0.37 16 35 H 0.40 3.97 7.70 -40.82 -0.31 3.65 16 36 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -33.20 334.33 -7.03 -40.23 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.89 Total: -0.68 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 0.32 Total: 9.99 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.16 Total: -55.59 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.28 Total: -15.11 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.13 Total: 18.02 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.40 Total: -0.50 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.52 Total: -1.41 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.20 -7.03 -40.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081941684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.385 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds