Wall clock time and date at job start Tue Mar 31 2020 17:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99340 * 2 1 4 4 H 1.08995 * 110.88771 * 32.42127 * 3 2 1 5 5 C 1.54908 * 111.00012 * 268.53822 * 3 2 1 6 6 N 1.47428 * 104.83227 * 204.88185 * 5 3 2 7 7 C 1.36941 * 125.64909 * 204.09617 * 6 5 3 8 8 H 1.07995 * 119.99875 * 161.60398 * 7 6 5 9 9 C 1.38810 * 119.99503 * 341.87555 * 7 6 5 10 10 N 1.31629 * 119.99355 * 157.37640 * 9 7 6 11 11 Si 1.86799 * 120.00459 * 337.37591 * 9 7 6 12 12 H 1.48494 * 109.46913 * 84.54348 * 11 9 7 13 13 H 1.48500 * 109.47150 * 204.54188 * 11 9 7 14 14 H 1.48499 * 109.46865 * 324.54018 * 11 9 7 15 15 C 1.47019 * 108.70184 * 24.35984 * 6 5 3 16 16 C 1.54336 * 107.26594 * 358.58350 * 15 6 5 17 17 H 1.09002 * 110.51587 * 96.45419 * 16 15 6 18 18 N 1.46499 * 111.00299 * 219.60224 * 16 15 6 19 19 C 1.34775 * 120.00341 * 268.78264 * 18 16 15 20 20 O 1.21637 * 119.99745 * 0.02562 * 19 18 16 21 21 C 1.47145 * 120.00407 * 179.97438 * 19 18 16 22 22 N 1.30572 * 125.52772 * 179.97438 * 21 19 18 23 23 C 1.30659 * 115.92759 * 180.02562 * 22 21 19 24 24 C 1.34441 * 115.74443 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 125.46397 * 180.02562 * 24 23 22 26 26 S 1.71071 * 109.07125 * 359.72401 * 24 23 22 27 27 H 1.08998 * 109.46926 * 60.01142 * 1 2 3 28 28 H 1.09004 * 109.46734 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47618 * 300.00255 * 1 2 3 30 30 H 1.09004 * 110.36659 * 86.04613 * 5 3 2 31 31 H 1.08996 * 110.37108 * 323.72429 * 5 3 2 32 32 H 0.97005 * 119.99622 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.88482 * 118.13236 * 15 6 5 34 34 H 1.09003 * 109.87966 * 239.29844 * 15 6 5 35 35 H 0.97006 * 119.99810 * 88.77930 * 18 16 15 36 36 H 1.07995 * 122.12928 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3828 2.0101 0.5460 5 6 2.2696 1.7977 -1.4457 6 7 3.3604 2.7814 -1.3195 7 6 3.6225 3.7996 -2.1969 8 1 4.2337 4.6347 -1.8881 9 6 3.0978 3.7610 -3.4814 10 7 2.9538 4.8753 -4.1672 11 14 2.5962 2.1279 -4.2369 12 1 1.2168 1.7862 -3.8061 13 1 2.6406 2.2330 -5.7175 14 1 3.5325 1.0664 -3.7877 15 6 4.1242 2.4843 -0.0989 16 6 3.4483 1.2750 0.5814 17 1 3.9555 0.3499 0.3074 18 7 3.4225 1.4382 2.0371 19 6 4.4336 0.9572 2.7872 20 8 5.3679 0.3881 2.2555 21 6 4.4080 1.1216 4.2492 22 7 5.3258 0.6995 5.0764 23 6 5.1122 0.9469 6.3415 24 6 3.9736 1.6037 6.6239 25 17 3.4417 2.0605 8.2120 26 16 3.1373 1.9247 5.1665 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.3759 2.2723 -1.8510 31 1 2.5794 0.9669 -2.0795 32 1 2.5875 4.8483 -5.0650 33 1 5.1545 2.2391 -0.3567 34 1 4.1020 3.3441 0.5708 35 1 2.6776 1.8925 2.4610 36 1 5.8060 0.6431 7.1113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081941684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:40 Heat of formation + Delta-G solvation = -18.355205 kcal Electronic energy + Delta-G solvation = -23518.754888 eV Core-core repulsion = 19770.615097 eV Total energy + Delta-G solvation = -3748.139792 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62126 -40.74722 -39.63203 -38.04879 -37.68381 -35.86465 -34.08434 -31.86533 -30.81207 -29.56118 -27.67609 -27.47958 -25.81646 -23.56093 -22.95313 -21.81606 -21.19527 -20.32360 -19.14295 -18.28534 -18.17804 -17.68934 -17.07631 -16.74772 -16.38665 -16.00856 -15.80478 -15.70581 -15.46121 -15.25335 -15.14751 -14.65863 -14.52438 -13.79559 -13.74910 -13.46952 -13.33680 -13.22685 -12.98670 -12.56457 -12.49985 -12.25811 -12.14563 -11.87687 -11.76290 -11.55390 -10.97783 -10.89778 -10.77203 -10.67795 -10.37873 -10.06793 -9.15056 -8.20985 -5.49912 -1.18997 -0.51344 0.14211 0.82196 1.02302 1.27172 1.39640 1.45442 1.49267 1.91094 2.37373 2.49827 3.04876 3.09457 3.34065 3.48129 3.58531 3.73315 3.85686 3.88701 4.22112 4.25498 4.51508 4.57742 4.69614 4.70483 4.72370 4.77384 4.88257 4.89043 5.16858 5.58766 5.99582 6.06354 6.14522 6.35018 6.67077 6.80923 7.46815 7.99035 8.98093 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.002917 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.125752 B = 9597.172966 C = 9930.948768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.391 6.391 3 C 0.088 3.912 4 H 0.112 0.888 5 C 0.088 3.912 6 N -0.618 5.618 7 C -0.236 4.236 8 H 0.067 0.933 9 C -0.027 4.027 10 N -0.949 5.949 11 Si 0.937 3.063 12 H -0.262 1.262 13 H -0.306 1.306 14 H -0.278 1.278 15 C 0.126 3.874 16 C 0.153 3.847 17 H 0.098 0.902 18 N -0.688 5.688 19 C 0.598 3.402 20 O -0.538 6.538 21 C -0.031 4.031 22 N -0.420 5.420 23 C 0.041 3.959 24 C -0.202 4.202 25 Cl 0.034 6.966 26 S 0.314 5.686 27 H 0.039 0.961 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.027 0.973 32 H 0.264 0.736 33 H 0.029 0.971 34 H 0.055 0.945 35 H 0.415 0.585 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.195 -7.976 26.073 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.309 6.309 3 C 0.029 3.971 4 H 0.129 0.871 5 C -0.038 4.038 6 N -0.346 5.346 7 C -0.365 4.365 8 H 0.085 0.915 9 C -0.223 4.223 10 N -0.595 5.595 11 Si 0.766 3.234 12 H -0.188 1.188 13 H -0.235 1.235 14 H -0.204 1.204 15 C 0.000 4.000 16 C 0.048 3.952 17 H 0.116 0.884 18 N -0.342 5.342 19 C 0.381 3.619 20 O -0.413 6.413 21 C -0.304 4.304 22 N -0.137 5.137 23 C -0.119 4.119 24 C -0.353 4.353 25 Cl 0.063 6.937 26 S 0.567 5.433 27 H 0.058 0.942 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.253 0.747 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.993 -8.160 25.131 27.332 hybrid contribution 0.356 -0.292 0.013 0.461 sum -6.636 -8.452 25.144 27.344 Atomic orbital electron populations 1.23100 0.78854 1.04379 1.01292 1.87903 1.22069 1.26086 1.94846 1.23358 0.93297 0.85768 0.94705 0.87071 1.22456 0.92163 0.92180 0.97002 1.44628 1.30959 1.33307 1.25705 1.18572 1.29766 0.96187 0.91926 0.91489 1.25546 1.00535 0.99367 0.96822 1.69945 1.49295 1.27246 1.13029 0.86104 0.79189 0.81718 0.76395 1.18795 1.23453 1.20403 1.21799 0.94583 0.95460 0.88124 1.21778 0.96070 0.99114 0.78282 0.88420 1.45413 1.23482 1.58836 1.06429 1.16871 0.82552 0.78679 0.83818 1.90874 1.35122 1.42599 1.72744 1.27074 0.97535 1.07733 0.98096 1.66761 1.26941 1.17518 1.02465 1.22253 0.97198 0.99831 0.92600 1.26828 1.02321 1.10032 0.96085 1.98423 1.88714 1.90238 1.16345 1.83681 1.19303 1.47408 0.92879 0.94248 0.87708 0.91306 0.92263 0.95586 0.92645 0.95239 0.92731 0.74692 0.77358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.89 113.37 1.23 1.61 16 2 O -0.39 -10.88 10.52 -148.98 -1.57 -12.44 16 3 C 0.09 2.63 3.12 31.99 0.10 2.73 16 4 H 0.11 2.62 7.77 -2.39 -0.02 2.60 16 5 C 0.09 3.57 4.42 86.85 0.38 3.95 16 6 N -0.62 -28.88 3.21 -691.97 -2.22 -31.10 16 7 C -0.24 -13.32 10.57 84.03 0.89 -12.43 16 8 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 9 C -0.03 -1.58 5.43 84.86 0.46 -1.12 16 10 N -0.95 -58.61 13.97 21.65 0.30 -58.31 16 11 Si 0.94 46.40 24.27 68.60 1.66 48.07 16 12 H -0.26 -11.87 6.48 99.48 0.64 -11.23 16 13 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 14 H -0.28 -13.84 6.66 99.48 0.66 -13.18 16 15 C 0.13 4.91 7.01 86.73 0.61 5.52 16 16 C 0.15 4.85 3.04 46.18 0.14 4.99 16 17 H 0.10 3.49 7.55 -2.39 -0.02 3.47 16 18 N -0.69 -16.82 5.11 -440.42 -2.25 -19.07 16 19 C 0.60 17.07 7.80 86.58 0.68 17.75 16 20 O -0.54 -20.42 16.71 -4.15 -0.07 -20.49 16 21 C -0.03 -0.71 7.45 87.22 0.65 -0.06 16 22 N -0.42 -10.27 10.59 -190.29 -2.02 -12.28 16 23 C 0.04 0.68 11.21 84.00 0.94 1.63 16 24 C -0.20 -2.80 6.95 66.95 0.47 -2.33 16 25 Cl 0.03 0.37 29.30 -2.72 -0.08 0.29 16 26 S 0.31 4.15 22.30 -56.49 -1.26 2.89 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.07 0.96 8.11 -2.39 -0.02 0.94 16 30 H 0.06 2.49 6.61 -2.38 -0.02 2.47 16 31 H 0.03 1.16 5.59 -2.39 -0.01 1.15 16 32 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.99 8.03 -2.39 -0.02 1.97 16 35 H 0.42 6.97 7.70 -92.70 -0.71 6.26 16 36 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -74.99 334.33 -0.63 -75.62 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: 0.32 Total: 4.59 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 6.55 Total: 22.24 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -6.19 Total: -120.76 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -1.64 Total: -32.94 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.66 Total: 48.07 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.26 Total: 2.89 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -0.08 Total: 0.29 kcal Total: -74.99 -0.63 -75.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081941684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.264 kcal (2) G-P(sol) polarization free energy of solvation -74.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds