Wall clock time and date at job start Tue Mar 31 2020 17:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99340 * 2 1 4 4 H 1.08995 * 110.88771 * 32.42127 * 3 2 1 5 5 C 1.54908 * 111.00012 * 268.53822 * 3 2 1 6 6 N 1.47428 * 104.83227 * 204.88185 * 5 3 2 7 7 C 1.36941 * 125.64909 * 204.09617 * 6 5 3 8 8 H 1.07995 * 119.99875 * 161.60398 * 7 6 5 9 9 C 1.38810 * 119.99503 * 341.87555 * 7 6 5 10 10 N 1.31629 * 119.99355 * 157.37640 * 9 7 6 11 11 Si 1.86799 * 120.00459 * 337.37591 * 9 7 6 12 12 H 1.48494 * 109.46913 * 84.54348 * 11 9 7 13 13 H 1.48500 * 109.47150 * 204.54188 * 11 9 7 14 14 H 1.48499 * 109.46865 * 324.54018 * 11 9 7 15 15 C 1.47019 * 108.70184 * 24.35984 * 6 5 3 16 16 C 1.54336 * 107.26594 * 358.58350 * 15 6 5 17 17 H 1.09002 * 110.51587 * 96.45419 * 16 15 6 18 18 N 1.46499 * 111.00299 * 219.60224 * 16 15 6 19 19 C 1.34775 * 120.00341 * 268.78264 * 18 16 15 20 20 O 1.21628 * 119.99869 * 359.97438 * 19 18 16 21 21 C 1.47222 * 120.00525 * 179.97438 * 19 18 16 22 22 N 1.30608 * 125.53156 * 359.69912 * 21 19 18 23 23 C 1.30733 * 115.89703 * 179.77905 * 22 21 19 24 24 Cl 1.73603 * 122.12091 * 180.21851 * 23 22 21 25 25 C 1.34328 * 115.75968 * 0.51336 * 23 22 21 26 26 S 1.71069 * 109.09319 * 359.72533 * 25 23 22 27 27 H 1.08998 * 109.46926 * 60.01142 * 1 2 3 28 28 H 1.09004 * 109.46734 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47618 * 300.00255 * 1 2 3 30 30 H 1.09004 * 110.36659 * 86.04613 * 5 3 2 31 31 H 1.08996 * 110.37108 * 323.72429 * 5 3 2 32 32 H 0.97005 * 119.99622 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.88482 * 118.13236 * 15 6 5 34 34 H 1.09003 * 109.87966 * 239.29844 * 15 6 5 35 35 H 0.97006 * 119.99810 * 88.77930 * 18 16 15 36 36 H 1.08003 * 125.45800 * 179.71004 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3828 2.0101 0.5460 5 6 2.2696 1.7977 -1.4457 6 7 3.3604 2.7814 -1.3195 7 6 3.6225 3.7996 -2.1969 8 1 4.2337 4.6347 -1.8881 9 6 3.0978 3.7610 -3.4814 10 7 2.9538 4.8753 -4.1672 11 14 2.5962 2.1279 -4.2369 12 1 1.2168 1.7862 -3.8061 13 1 2.6406 2.2330 -5.7175 14 1 3.5325 1.0664 -3.7877 15 6 4.1242 2.4843 -0.0989 16 6 3.4483 1.2750 0.5814 17 1 3.9555 0.3499 0.3074 18 7 3.4225 1.4382 2.0371 19 6 4.4336 0.9572 2.7872 20 8 5.3674 0.3873 2.2557 21 6 4.4080 1.1217 4.2500 22 7 3.4659 1.7179 4.9304 23 6 3.6325 1.7526 6.2266 24 17 2.4775 2.4994 7.2859 25 6 4.7569 1.1793 6.6863 26 16 5.6460 0.5531 5.3657 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.3759 2.2723 -1.8510 31 1 2.5794 0.9669 -2.0795 32 1 2.5875 4.8483 -5.0650 33 1 5.1545 2.2391 -0.3567 34 1 4.1020 3.3441 0.5708 35 1 2.6776 1.8925 2.4610 36 1 5.0526 1.1229 7.7235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082065434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:45 Heat of formation + Delta-G solvation = 4.397448 kcal Electronic energy + Delta-G solvation = -23600.075026 eV Core-core repulsion = 19852.921864 eV Total energy + Delta-G solvation = -3747.153162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.60302 -39.62356 -38.40260 -36.92411 -36.25401 -34.34477 -32.11390 -31.03674 -29.25560 -28.03290 -26.68689 -26.36439 -24.14754 -22.38626 -21.32363 -20.57384 -20.00160 -19.10154 -17.71848 -16.99035 -16.81101 -16.09260 -16.02610 -15.83941 -15.15508 -14.70026 -14.56580 -14.36415 -14.19237 -14.01285 -13.55210 -12.98855 -12.87419 -12.53942 -12.14652 -12.10799 -12.04597 -11.54905 -11.47549 -11.38625 -11.21261 -10.87165 -10.68726 -10.47762 -10.28338 -10.25725 -10.09339 -9.54919 -9.44555 -9.24623 -9.02628 -8.68399 -7.13703 -5.99231 -3.31450 -0.28843 0.54495 0.82357 1.74621 1.79162 2.88614 2.94447 3.31649 3.47491 3.51342 3.78108 3.87790 4.46450 4.50937 4.58912 4.79884 5.01183 5.12096 5.16241 5.26266 5.36058 5.41492 5.52400 5.65726 5.73997 5.81884 6.14017 6.33248 6.45264 6.51851 6.62533 6.76813 7.30173 7.34143 7.61417 7.93609 8.25795 8.76268 9.62447 10.06782 11.16262 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.003045 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.030585 B = 9191.795500 C = 9416.970746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.068 3.932 4 H 0.080 0.920 5 C 0.096 3.904 6 N -0.603 5.603 7 C -0.244 4.244 8 H 0.096 0.904 9 C 0.025 3.975 10 N -0.905 5.905 11 Si 0.880 3.120 12 H -0.285 1.285 13 H -0.300 1.300 14 H -0.273 1.273 15 C 0.129 3.871 16 C 0.136 3.864 17 H 0.113 0.887 18 N -0.685 5.685 19 C 0.599 3.401 20 O -0.519 6.519 21 C 0.002 3.998 22 N -0.421 5.421 23 C 0.110 3.890 24 Cl -0.006 7.006 25 C -0.278 4.278 26 S 0.302 5.698 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.411 0.589 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.310 -9.642 23.571 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.009 3.991 4 H 0.098 0.902 5 C -0.030 4.030 6 N -0.331 5.331 7 C -0.371 4.371 8 H 0.113 0.887 9 C -0.174 4.174 10 N -0.548 5.548 11 Si 0.710 3.290 12 H -0.212 1.212 13 H -0.228 1.228 14 H -0.199 1.199 15 C 0.003 3.997 16 C 0.031 3.969 17 H 0.130 0.870 18 N -0.335 5.335 19 C 0.380 3.620 20 O -0.394 6.394 21 C -0.274 4.274 22 N -0.140 5.140 23 C -0.055 4.055 24 Cl 0.022 6.978 25 C -0.420 4.420 26 S 0.557 5.443 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.247 0.753 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.867 -10.318 22.626 24.883 hybrid contribution -1.774 0.163 0.496 1.849 sum -0.907 -10.155 23.122 25.270 Atomic orbital electron populations 1.22779 0.81113 1.02472 1.00217 1.87884 1.19656 1.27117 1.94993 1.23645 0.93111 0.84491 0.97870 0.90226 1.22384 0.93472 0.93401 0.93767 1.44591 1.29289 1.33736 1.25528 1.18634 1.31318 0.95981 0.91130 0.88674 1.24995 0.99352 0.96805 0.96292 1.69845 1.46988 1.25396 1.12600 0.87033 0.78462 0.85730 0.77777 1.21250 1.22821 1.19894 1.21713 0.95343 0.93633 0.89061 1.22262 0.96084 1.01364 0.77211 0.86959 1.45698 1.23200 1.57294 1.07352 1.16572 0.83358 0.79503 0.82551 1.90904 1.34079 1.42687 1.71765 1.27642 0.95631 1.04524 0.99613 1.66262 1.26890 1.15582 1.05306 1.20384 0.93389 1.03255 0.88497 1.98415 1.58432 1.80472 1.60494 1.26673 0.99741 1.07750 1.07850 1.84208 1.19958 1.47445 0.92695 0.93713 0.89802 0.94084 0.91603 0.94140 0.92587 0.93538 0.93961 0.75336 0.78814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.89 101.05 1.10 1.49 16 2 O -0.38 -6.16 10.52 -35.23 -0.37 -6.53 16 3 C 0.07 1.17 3.12 -24.58 -0.08 1.09 16 4 H 0.08 1.23 7.77 -51.93 -0.40 0.83 16 5 C 0.10 2.07 4.42 -2.53 -0.01 2.06 16 6 N -0.60 -14.44 3.21 -170.07 -0.55 -14.98 16 7 C -0.24 -6.85 10.57 -15.06 -0.16 -7.00 16 8 H 0.10 2.82 8.06 -52.49 -0.42 2.40 16 9 C 0.02 0.71 5.43 -17.43 -0.09 0.62 16 10 N -0.91 -27.61 13.97 55.49 0.78 -26.83 16 11 Si 0.88 22.47 24.27 -169.99 -4.13 18.34 16 12 H -0.29 -6.94 6.48 56.52 0.37 -6.58 16 13 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 14 H -0.27 -6.98 6.66 56.52 0.38 -6.60 16 15 C 0.13 2.58 7.01 -3.06 -0.02 2.56 16 16 C 0.14 2.32 3.04 -66.09 -0.20 2.11 16 17 H 0.11 2.04 7.55 -51.93 -0.39 1.65 16 18 N -0.68 -9.85 5.11 -53.16 -0.27 -10.12 16 19 C 0.60 8.66 7.81 -12.61 -0.10 8.57 16 20 O -0.52 -8.78 16.58 5.25 0.09 -8.69 16 21 C 0.00 0.02 7.46 -14.42 -0.11 -0.09 16 22 N -0.42 -4.99 10.25 -8.62 -0.09 -5.07 16 23 C 0.11 1.10 7.22 -19.40 -0.14 0.96 16 24 Cl -0.01 -0.06 29.20 -51.86 -1.51 -1.57 16 25 C -0.28 -2.07 10.93 29.35 0.32 -1.75 16 26 S 0.30 2.55 23.03 -107.50 -2.48 0.07 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.45 8.11 -51.93 -0.42 0.02 16 30 H 0.07 1.49 6.61 -51.93 -0.34 1.14 16 31 H 0.04 0.94 5.59 -51.93 -0.29 0.65 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 35 H 0.41 5.25 8.22 -40.82 -0.34 4.92 16 36 H 0.19 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 335.00 15.07 5.05 5.05 Total: -1.00 -32.49 335.00 -6.88 -39.38 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.91 Total: 0.36 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 0.51 Total: 10.61 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.13 Total: -57.02 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.28 Total: -15.22 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.13 Total: 18.34 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.48 Total: 0.07 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.51 Total: -1.57 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.49 -6.88 -39.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082065434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.774 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds