Wall clock time and date at job start Tue Mar 31 2020 17:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99340 * 2 1 4 4 H 1.08995 * 110.88771 * 32.42127 * 3 2 1 5 5 C 1.54908 * 111.00012 * 268.53822 * 3 2 1 6 6 N 1.47428 * 104.83227 * 204.88185 * 5 3 2 7 7 C 1.36941 * 125.64909 * 204.09617 * 6 5 3 8 8 H 1.07995 * 119.99875 * 161.60398 * 7 6 5 9 9 C 1.38810 * 119.99503 * 341.87555 * 7 6 5 10 10 N 1.31629 * 119.99355 * 157.37640 * 9 7 6 11 11 Si 1.86799 * 120.00459 * 337.37591 * 9 7 6 12 12 H 1.48494 * 109.46913 * 84.54348 * 11 9 7 13 13 H 1.48500 * 109.47150 * 204.54188 * 11 9 7 14 14 H 1.48499 * 109.46865 * 324.54018 * 11 9 7 15 15 C 1.47019 * 108.70184 * 24.35984 * 6 5 3 16 16 C 1.54336 * 107.26594 * 358.58350 * 15 6 5 17 17 H 1.09002 * 110.51587 * 96.45419 * 16 15 6 18 18 N 1.46499 * 111.00299 * 219.60224 * 16 15 6 19 19 C 1.34775 * 120.00341 * 268.78264 * 18 16 15 20 20 O 1.21628 * 119.99869 * 359.97438 * 19 18 16 21 21 C 1.47222 * 120.00525 * 179.97438 * 19 18 16 22 22 N 1.30608 * 125.53156 * 359.69912 * 21 19 18 23 23 C 1.30733 * 115.89703 * 179.77905 * 22 21 19 24 24 Cl 1.73603 * 122.12091 * 180.21851 * 23 22 21 25 25 C 1.34328 * 115.75968 * 0.51336 * 23 22 21 26 26 S 1.71069 * 109.09319 * 359.72533 * 25 23 22 27 27 H 1.08998 * 109.46926 * 60.01142 * 1 2 3 28 28 H 1.09004 * 109.46734 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47618 * 300.00255 * 1 2 3 30 30 H 1.09004 * 110.36659 * 86.04613 * 5 3 2 31 31 H 1.08996 * 110.37108 * 323.72429 * 5 3 2 32 32 H 0.97005 * 119.99622 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.88482 * 118.13236 * 15 6 5 34 34 H 1.09003 * 109.87966 * 239.29844 * 15 6 5 35 35 H 0.97006 * 119.99810 * 88.77930 * 18 16 15 36 36 H 1.08003 * 125.45800 * 179.71004 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3828 2.0101 0.5460 5 6 2.2696 1.7977 -1.4457 6 7 3.3604 2.7814 -1.3195 7 6 3.6225 3.7996 -2.1969 8 1 4.2337 4.6347 -1.8881 9 6 3.0978 3.7610 -3.4814 10 7 2.9538 4.8753 -4.1672 11 14 2.5962 2.1279 -4.2369 12 1 1.2168 1.7862 -3.8061 13 1 2.6406 2.2330 -5.7175 14 1 3.5325 1.0664 -3.7877 15 6 4.1242 2.4843 -0.0989 16 6 3.4483 1.2750 0.5814 17 1 3.9555 0.3499 0.3074 18 7 3.4225 1.4382 2.0371 19 6 4.4336 0.9572 2.7872 20 8 5.3674 0.3873 2.2557 21 6 4.4080 1.1217 4.2500 22 7 3.4659 1.7179 4.9304 23 6 3.6325 1.7526 6.2266 24 17 2.4775 2.4994 7.2859 25 6 4.7569 1.1793 6.6863 26 16 5.6460 0.5531 5.3657 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.3759 2.2723 -1.8510 31 1 2.5794 0.9669 -2.0795 32 1 2.5875 4.8483 -5.0650 33 1 5.1545 2.2391 -0.3567 34 1 4.1020 3.3441 0.5708 35 1 2.6776 1.8925 2.4610 36 1 5.0526 1.1229 7.7235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082065434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:44 Heat of formation + Delta-G solvation = -21.306247 kcal Electronic energy + Delta-G solvation = -23601.189622 eV Core-core repulsion = 19852.921864 eV Total energy + Delta-G solvation = -3748.267758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59108 -40.71056 -39.69373 -37.71125 -37.61070 -35.78950 -34.06199 -32.00819 -30.77030 -29.51623 -27.74185 -27.54296 -25.80694 -23.42362 -22.93462 -21.94930 -21.16075 -19.95147 -19.13082 -18.43838 -18.08770 -17.72598 -16.86495 -16.77178 -16.51878 -16.04742 -15.86189 -15.73262 -15.47194 -15.25455 -14.75937 -14.62832 -14.45248 -13.80797 -13.74289 -13.27087 -13.20583 -13.03146 -12.75128 -12.58535 -12.50958 -12.27789 -12.15333 -11.87294 -11.76442 -11.55717 -11.18691 -10.96006 -10.93588 -10.74799 -10.30767 -9.90278 -9.16390 -8.22126 -5.51271 -1.04929 -0.16415 0.10345 0.92170 1.09833 1.27103 1.38472 1.46795 1.84328 1.88178 2.36737 2.47735 2.93100 3.03513 3.33843 3.45122 3.70841 3.74842 3.85391 3.99793 4.20883 4.25165 4.38667 4.48338 4.53148 4.68371 4.72298 4.78333 4.83540 4.87433 5.20596 5.57157 5.93842 6.04851 6.10821 6.26452 6.65527 6.84179 7.45424 7.98014 8.97025 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.003045 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.030585 B = 9191.795500 C = 9416.970746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.389 6.389 3 C 0.087 3.913 4 H 0.101 0.899 5 C 0.090 3.910 6 N -0.618 5.618 7 C -0.238 4.238 8 H 0.066 0.934 9 C -0.028 4.028 10 N -0.949 5.949 11 Si 0.939 3.061 12 H -0.265 1.265 13 H -0.304 1.304 14 H -0.275 1.275 15 C 0.129 3.871 16 C 0.152 3.848 17 H 0.102 0.898 18 N -0.680 5.680 19 C 0.603 3.397 20 O -0.550 6.550 21 C -0.043 4.043 22 N -0.431 5.431 23 C 0.083 3.917 24 Cl -0.003 7.003 25 C -0.248 4.248 26 S 0.359 5.641 27 H 0.040 0.960 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.419 0.581 36 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -11.511 26.407 28.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.307 6.307 3 C 0.028 3.972 4 H 0.119 0.881 5 C -0.036 4.036 6 N -0.346 5.346 7 C -0.367 4.367 8 H 0.084 0.916 9 C -0.223 4.223 10 N -0.595 5.595 11 Si 0.767 3.233 12 H -0.191 1.191 13 H -0.232 1.232 14 H -0.201 1.201 15 C 0.003 3.997 16 C 0.046 3.954 17 H 0.120 0.880 18 N -0.331 5.331 19 C 0.386 3.614 20 O -0.428 6.428 21 C -0.316 4.316 22 N -0.152 5.152 23 C -0.082 4.082 24 Cl 0.025 6.975 25 C -0.391 4.391 26 S 0.613 5.387 27 H 0.058 0.942 28 H 0.126 0.874 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.257 0.743 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.273 -12.212 25.503 28.278 hybrid contribution -1.519 0.752 -0.183 1.705 sum -1.246 -11.460 25.320 27.821 Atomic orbital electron populations 1.23071 0.79008 1.04383 1.01008 1.87881 1.21926 1.26067 1.94850 1.23336 0.93554 0.85578 0.94772 0.88127 1.22434 0.92076 0.92250 0.96822 1.44613 1.30951 1.33372 1.25707 1.18568 1.29903 0.96242 0.91940 0.91636 1.25561 1.00420 0.99523 0.96797 1.69952 1.49241 1.27303 1.13044 0.86072 0.79110 0.81635 0.76439 1.19101 1.23202 1.20059 1.21778 0.94770 0.95279 0.87903 1.21810 0.95692 0.99158 0.78752 0.87955 1.45505 1.23863 1.57673 1.06060 1.16838 0.82452 0.78396 0.83748 1.90879 1.35086 1.44017 1.72816 1.27074 0.98060 1.07816 0.98666 1.66168 1.27321 1.15357 1.06328 1.20544 0.94640 1.04883 0.88152 1.98415 1.58508 1.80555 1.60062 1.27176 0.98007 1.04467 1.09434 1.84082 1.17841 1.45471 0.91283 0.94170 0.87449 0.92022 0.92608 0.95228 0.92612 0.94661 0.93478 0.74272 0.75226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.89 113.37 1.23 1.70 16 2 O -0.39 -11.79 10.52 -148.98 -1.57 -13.36 16 3 C 0.09 2.86 3.12 31.99 0.10 2.96 16 4 H 0.10 2.88 7.77 -2.39 -0.02 2.87 16 5 C 0.09 3.83 4.42 86.85 0.38 4.21 16 6 N -0.62 -29.93 3.21 -691.97 -2.22 -32.15 16 7 C -0.24 -13.76 10.57 84.03 0.89 -12.88 16 8 H 0.07 4.08 8.06 -2.91 -0.02 4.05 16 9 C -0.03 -1.63 5.43 84.86 0.46 -1.17 16 10 N -0.95 -59.55 13.97 21.65 0.30 -59.25 16 11 Si 0.94 47.10 24.27 68.60 1.66 48.76 16 12 H -0.27 -12.31 6.48 99.48 0.64 -11.67 16 13 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 14 H -0.27 -13.71 6.66 99.48 0.66 -13.05 16 15 C 0.13 5.20 7.01 86.73 0.61 5.81 16 16 C 0.15 5.09 3.04 46.18 0.14 5.23 16 17 H 0.10 3.69 7.55 -2.39 -0.02 3.67 16 18 N -0.68 -18.92 5.11 -440.34 -2.25 -21.17 16 19 C 0.60 16.95 7.81 86.60 0.68 17.63 16 20 O -0.55 -18.43 16.58 -4.12 -0.07 -18.50 16 21 C -0.04 -0.95 7.46 87.24 0.65 -0.30 16 22 N -0.43 -9.45 10.25 -181.17 -1.86 -11.31 16 23 C 0.08 1.44 7.22 83.96 0.61 2.05 16 24 Cl 0.00 -0.05 29.20 -2.72 -0.08 -0.13 16 25 C -0.25 -2.80 10.93 66.93 0.73 -2.07 16 26 S 0.36 5.04 23.03 -56.49 -1.30 3.74 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.06 1.13 8.11 -2.39 -0.02 1.11 16 30 H 0.06 2.47 6.61 -2.38 -0.02 2.46 16 31 H 0.03 1.35 5.59 -2.39 -0.01 1.34 16 32 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16 35 H 0.42 10.16 8.22 -92.70 -0.76 9.40 16 36 H 0.23 0.79 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -72.13 335.00 -0.63 -72.75 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.27 Total: 7.43 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 6.48 Total: 23.18 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -6.03 Total: -123.87 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.64 Total: -31.86 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.66 Total: 48.76 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -1.30 Total: 3.74 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.13 kcal Total: -72.13 -0.63 -72.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082065434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.449 kcal (2) G-P(sol) polarization free energy of solvation -72.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds