Wall clock time and date at job start Tue Mar 31 2020 17:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00244 * 2 1 4 4 H 1.09000 * 110.63878 * 26.85383 * 3 2 1 5 5 C 1.54336 * 111.00042 * 263.78013 * 3 2 1 6 6 N 1.47021 * 107.26378 * 219.59922 * 5 3 2 7 7 C 1.36930 * 125.64701 * 178.85098 * 6 5 3 8 8 H 1.08001 * 120.00119 * 189.75453 * 7 6 5 9 9 C 1.38810 * 119.99961 * 9.75277 * 7 6 5 10 10 N 1.31631 * 119.99846 * 195.14253 * 9 7 6 11 11 Si 1.86798 * 120.00326 * 15.13878 * 9 7 6 12 12 H 1.48505 * 109.47267 * 174.49184 * 11 9 7 13 13 H 1.48507 * 109.46844 * 54.49250 * 11 9 7 14 14 H 1.48496 * 109.47237 * 294.49670 * 11 9 7 15 15 C 1.47425 * 108.70462 * 358.58474 * 6 5 3 16 16 C 1.54912 * 104.83156 * 24.35748 * 15 6 5 17 17 H 1.08997 * 111.00807 * 81.06150 * 16 15 6 18 18 N 1.46501 * 111.00340 * 204.87978 * 16 15 6 19 19 C 1.34771 * 119.99686 * 273.54097 * 18 16 15 20 20 O 1.21637 * 120.00384 * 0.02562 * 19 18 16 21 21 C 1.47243 * 119.99929 * 180.02562 * 19 18 16 22 22 C 1.35152 * 123.14131 * 180.02562 * 21 19 18 23 23 S 1.70932 * 108.86584 * 179.97438 * 22 21 19 24 24 C 1.70764 * 91.14724 * 359.97438 * 23 22 21 25 25 Cl 1.73601 * 124.72679 * 179.97438 * 24 23 22 26 26 N 1.28772 * 110.54740 * 359.77022 * 24 23 22 27 27 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47126 * 300.00482 * 1 2 3 29 29 H 1.09000 * 109.47149 * 59.99836 * 1 2 3 30 30 H 1.09008 * 109.99015 * 100.12321 * 5 3 2 31 31 H 1.08998 * 109.77984 * 338.95447 * 5 3 2 32 32 H 0.96996 * 119.99667 * 2.97181 * 10 9 7 33 33 H 1.08997 * 110.36537 * 143.19228 * 15 6 5 34 34 H 1.08997 * 110.36694 * 265.52137 * 15 6 5 35 35 H 0.97001 * 119.99960 * 93.55138 * 18 16 15 36 36 H 1.08007 * 125.56290 * 359.96285 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4499 -1.3549 7 6 4.3517 2.9803 -2.4155 8 1 5.3619 3.3380 -2.2816 9 6 3.7475 3.0581 -3.6628 10 7 4.4777 3.2811 -4.7351 11 14 1.8982 2.8464 -3.8197 12 1 1.4877 3.1041 -5.2234 13 1 1.2118 3.8070 -2.9189 14 1 1.5249 1.4598 -3.4413 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9171 0.3654 0.5365 18 7 3.2172 1.5207 2.1639 19 6 4.2052 1.1830 3.0160 20 8 5.2337 0.6920 2.5910 21 6 4.0398 1.4085 4.4616 22 6 4.9883 1.0947 5.3718 23 16 4.4182 1.5081 6.9293 24 6 2.9462 2.0771 6.2770 25 17 1.6421 2.7416 7.2105 26 7 2.9400 1.9485 4.9957 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6128 2.4181 -1.8233 31 1 2.4707 0.8724 -2.0758 32 1 5.4424 3.3480 -4.6595 33 1 5.1786 2.3788 0.1248 34 1 3.7841 3.4306 0.5171 35 1 2.3971 1.9125 2.5029 36 1 5.9495 0.6544 5.1509 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082305705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:37 Heat of formation + Delta-G solvation = 8.930492 kcal Electronic energy + Delta-G solvation = -23687.260079 eV Core-core repulsion = 19940.303484 eV Total energy + Delta-G solvation = -3746.956595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.83905 -39.37828 -38.25371 -37.37175 -36.22667 -34.30335 -32.07036 -30.95890 -29.21394 -28.16167 -26.35658 -26.16894 -23.99910 -22.70880 -21.15463 -20.42281 -20.17854 -19.42869 -17.66054 -17.05513 -16.81376 -16.38723 -16.09043 -15.86100 -15.01702 -14.82119 -14.57638 -14.39047 -14.19725 -14.02492 -13.50644 -13.22707 -12.73065 -12.51471 -12.34482 -12.13739 -11.96582 -11.91076 -11.82228 -11.26263 -11.14718 -10.69081 -10.52920 -10.25359 -10.21607 -10.07536 -9.82317 -9.42081 -9.26082 -9.07116 -8.94386 -8.62601 -7.08491 -6.32172 -3.23648 -0.06710 0.18462 0.95705 1.31862 1.48881 3.06569 3.14795 3.39838 3.45552 3.68415 3.82720 3.88846 4.60394 4.69575 4.72671 4.77079 5.06479 5.16768 5.23960 5.29446 5.40084 5.44605 5.52061 5.67899 5.77544 5.83428 6.16869 6.30470 6.48818 6.51608 6.63227 6.75160 7.34867 7.48688 7.60984 8.11111 8.32115 9.02702 9.52581 10.17680 11.19052 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.003049 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.011748 B = 9180.588273 C = 9784.782893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.072 3.928 4 H 0.074 0.926 5 C 0.096 3.904 6 N -0.606 5.606 7 C -0.322 4.322 8 H 0.082 0.918 9 C -0.021 4.021 10 N -0.926 5.926 11 Si 1.068 2.932 12 H -0.299 1.299 13 H -0.298 1.298 14 H -0.284 1.284 15 C 0.131 3.869 16 C 0.134 3.866 17 H 0.111 0.889 18 N -0.696 5.696 19 C 0.595 3.405 20 O -0.524 6.524 21 C 0.027 3.973 22 C -0.221 4.221 23 S 0.282 5.718 24 C 0.044 3.956 25 Cl 0.033 6.967 26 N -0.430 5.430 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.263 0.737 33 H 0.059 0.941 34 H 0.029 0.971 35 H 0.407 0.593 36 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 -4.459 27.817 28.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.014 3.986 4 H 0.092 0.908 5 C -0.030 4.030 6 N -0.335 5.335 7 C -0.449 4.449 8 H 0.100 0.900 9 C -0.220 4.220 10 N -0.567 5.567 11 Si 0.902 3.098 12 H -0.227 1.227 13 H -0.227 1.227 14 H -0.211 1.211 15 C 0.004 3.996 16 C 0.028 3.972 17 H 0.129 0.871 18 N -0.346 5.346 19 C 0.377 3.623 20 O -0.400 6.400 21 C -0.108 4.108 22 C -0.363 4.363 23 S 0.534 5.466 24 C -0.261 4.261 25 Cl 0.060 6.940 26 N -0.148 5.148 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.242 0.758 36 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.732 -4.746 27.085 28.310 hybrid contribution 0.432 0.491 0.438 0.787 sum -6.301 -4.255 27.523 28.554 Atomic orbital electron populations 1.22806 0.81271 1.02629 1.00024 1.87940 1.19508 1.26891 1.94900 1.23396 0.93754 0.84760 0.96736 0.90771 1.22419 0.89549 0.96594 0.94430 1.44603 1.20793 1.65888 1.02201 1.20187 0.97726 1.39567 0.87442 0.90050 1.25822 1.06600 0.98929 0.90679 1.70899 1.07084 1.50544 1.28212 0.83883 0.75932 0.76204 0.73815 1.22743 1.22722 1.21117 1.21857 0.98464 0.93788 0.85517 1.22444 0.95886 1.01462 0.77371 0.87106 1.45698 1.19219 1.62774 1.06888 1.16890 0.83826 0.78531 0.83047 1.90870 1.27704 1.44134 1.77269 1.20294 0.89682 1.04274 0.96576 1.26849 1.06572 1.06370 0.96506 1.82987 1.05855 1.51841 1.05908 1.27159 0.98066 1.07626 0.93203 1.98449 1.45183 1.83004 1.67342 1.66678 1.24990 1.14152 1.09015 0.89665 0.94180 0.93766 0.94837 0.91874 0.92741 0.92289 0.95325 0.75758 0.78217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.85 101.05 1.10 1.47 16 2 O -0.37 -6.32 10.45 -35.23 -0.37 -6.69 16 3 C 0.07 1.29 3.06 -24.89 -0.08 1.21 16 4 H 0.07 1.15 7.68 -51.93 -0.40 0.75 16 5 C 0.10 2.14 4.40 -3.06 -0.01 2.13 16 6 N -0.61 -15.27 3.33 -170.07 -0.57 -15.84 16 7 C -0.32 -9.44 10.56 -15.06 -0.16 -9.60 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 9 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 10 N -0.93 -29.51 13.71 55.49 0.76 -28.75 16 11 Si 1.07 27.00 24.52 -169.99 -4.17 22.83 16 12 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 13 H -0.30 -7.19 6.82 56.52 0.39 -6.80 16 14 H -0.28 -6.60 5.41 56.52 0.31 -6.30 16 15 C 0.13 2.78 6.93 -2.53 -0.02 2.76 16 16 C 0.13 2.43 3.04 -65.78 -0.20 2.23 16 17 H 0.11 2.22 7.73 -51.93 -0.40 1.82 16 18 N -0.70 -10.57 5.23 -52.86 -0.28 -10.85 16 19 C 0.59 9.17 7.79 -12.60 -0.10 9.07 16 20 O -0.52 -9.61 16.46 5.24 0.09 -9.52 16 21 C 0.03 0.33 6.70 -84.51 -0.57 -0.24 16 22 C -0.22 -2.04 10.61 29.63 0.31 -1.73 16 23 S 0.28 1.80 22.96 -107.50 -2.47 -0.67 16 24 C 0.04 0.40 7.98 51.48 0.41 0.81 16 25 Cl 0.03 0.25 29.33 -51.86 -1.52 -1.27 16 26 N -0.43 -4.97 10.13 -9.45 -0.10 -5.06 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.43 8.11 -51.93 -0.42 0.01 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.03 0.78 3.89 -51.92 -0.20 0.57 16 31 H 0.06 1.52 6.62 -51.93 -0.34 1.17 16 32 H 0.26 8.27 8.73 -40.82 -0.36 7.92 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.41 5.41 8.04 -40.82 -0.33 5.09 16 36 H 0.20 1.59 8.03 -52.48 -0.42 1.17 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -34.65 332.31 -6.91 -41.56 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -3.89 Total: 1.85 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 0.59 Total: 7.40 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.18 Total: -60.50 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.28 Total: -16.21 kcal Atomic # 14 Polarization: 27.00 SS G_CDS: -4.17 Total: 22.83 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.47 Total: -0.67 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.52 Total: -1.27 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.65 -6.91 -41.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082305705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.487 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds