Wall clock time and date at job start Tue Mar 31 2020 17:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30943 * 122.89553 * 2 1 4 4 C 1.29590 * 117.32053 * 180.30694 * 3 2 1 5 5 Cl 1.73605 * 124.80593 * 179.77102 * 4 3 2 6 6 S 1.70945 * 110.37993 * 359.75130 * 4 3 2 7 7 C 1.35664 * 122.89483 * 179.84615 * 2 1 3 8 8 C 1.46585 * 126.12010 * 359.97438 * 7 2 1 9 9 O 1.21695 * 120.00162 * 359.71522 * 8 7 2 10 10 N 1.34782 * 120.00011 * 179.71117 * 8 7 2 11 11 C 1.46496 * 120.00001 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.64085 * 31.86174 * 11 10 8 13 13 C 1.54326 * 110.72058 * 268.52400 * 11 10 8 14 14 N 1.47283 * 107.30758 * 219.45595 * 13 11 10 15 15 C 1.36940 * 125.79385 * 178.92945 * 14 13 11 16 16 H 1.07998 * 120.00050 * 341.51182 * 15 14 13 17 17 C 1.38813 * 119.99845 * 161.52064 * 15 14 13 18 18 N 1.31625 * 119.99502 * 157.60351 * 17 15 14 19 19 Si 1.86792 * 120.00162 * 337.60447 * 17 15 14 20 20 H 1.48498 * 109.47196 * 84.54220 * 19 17 15 21 21 H 1.48510 * 109.47106 * 204.53762 * 19 17 15 22 22 H 1.48492 * 109.47267 * 324.53766 * 19 17 15 23 23 C 1.47426 * 108.55833 * 358.92209 * 14 13 11 24 24 C 1.54908 * 104.92948 * 24.15781 * 23 14 13 25 25 H 1.08996 * 111.00537 * 204.82150 * 24 23 14 26 26 O 1.42902 * 111.00171 * 81.00575 * 24 23 14 27 27 H 1.08998 * 109.46738 * 270.15136 * 1 2 3 28 28 H 1.08995 * 109.47197 * 30.15582 * 1 2 3 29 29 H 1.09005 * 109.46730 * 150.15338 * 1 2 3 30 30 H 0.96996 * 119.99780 * 0.02562 * 10 8 7 31 31 H 1.09001 * 109.88166 * 338.86731 * 13 11 10 32 32 H 1.09005 * 109.88148 * 100.02356 * 13 11 10 33 33 H 0.97002 * 119.99552 * 179.97438 * 18 17 15 34 34 H 1.09001 * 110.36505 * 265.26095 * 23 14 13 35 35 H 1.09001 * 110.36209 * 143.05158 * 23 14 13 36 36 H 0.96694 * 114.00092 * 61.46057 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2182 1.0995 0.0000 4 6 3.5080 0.9736 -0.0062 5 17 4.6327 2.2960 -0.0131 6 16 3.9448 -0.6791 -0.0060 7 6 2.2438 -1.1391 0.0031 8 6 1.7189 -2.5077 0.0073 9 8 0.5170 -2.6984 0.0135 10 7 2.5673 -3.5550 0.0041 11 6 2.0427 -4.9228 0.0078 12 1 1.0937 -4.9717 -0.5262 13 6 1.8887 -5.4447 1.4519 14 7 2.3042 -6.8577 1.4538 15 6 2.3359 -7.6817 2.5471 16 1 2.3345 -7.2601 3.5413 17 6 2.3700 -9.0590 2.3773 18 7 2.8336 -9.8292 3.3387 19 14 1.7581 -9.8192 0.7846 20 1 2.8483 -9.8012 -0.2235 21 1 1.3383 -11.2216 1.0346 22 1 0.6011 -9.0394 0.2764 23 6 2.6807 -7.2379 0.0801 24 6 3.0712 -5.9069 -0.6096 25 1 2.9470 -5.9757 -1.6902 26 8 4.4076 -5.5287 -0.2733 27 1 -0.3633 0.0027 1.0277 28 1 -0.3633 0.8885 -0.5162 29 1 -0.3633 -0.8914 -0.5115 30 1 3.5253 -3.4030 -0.0005 31 1 2.5266 -4.8702 2.1237 32 1 0.8481 -5.3639 1.7663 33 1 2.8571 -10.7917 3.2202 34 1 1.8348 -7.6966 -0.4319 35 1 3.5300 -7.9210 0.0949 36 1 5.0790 -6.1655 -0.5538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083491959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:37 Heat of formation + Delta-G solvation = -3.958573 kcal Electronic energy + Delta-G solvation = -23642.352079 eV Core-core repulsion = 19894.836572 eV Total energy + Delta-G solvation = -3747.515507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.72643 -39.63543 -38.19663 -37.42364 -35.08726 -34.32397 -32.18453 -31.89752 -29.62726 -28.42086 -27.52263 -25.27931 -24.42582 -22.27472 -21.29513 -20.13164 -19.88872 -18.88621 -17.66747 -17.25193 -16.72137 -16.19787 -15.93029 -15.63060 -15.32235 -14.65838 -14.49675 -14.11039 -13.91146 -13.67459 -13.24815 -13.16939 -12.91221 -12.71618 -12.48795 -12.06625 -11.96512 -11.71793 -11.52806 -11.43203 -11.29219 -11.10860 -10.56357 -10.41057 -10.31529 -10.04222 -9.96851 -9.69631 -9.52882 -9.21525 -9.00405 -8.71260 -7.12301 -6.00152 -3.30913 -0.28954 0.19795 1.01684 1.35014 1.98141 2.90281 2.97108 3.23997 3.42122 3.43474 3.96662 4.20141 4.47010 4.55112 4.70998 4.87145 4.92104 5.13813 5.30064 5.34168 5.39734 5.48990 5.58544 5.65113 5.83682 6.03175 6.22008 6.24996 6.32224 6.56570 6.69140 7.00117 7.40062 7.57756 7.77182 8.03136 8.25182 8.76032 9.61339 10.07418 11.15897 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.002907 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.022229 B = 9629.111761 C =10082.684494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.158 3.842 3 N -0.464 5.464 4 C 0.076 3.924 5 Cl 0.035 6.965 6 S 0.245 5.755 7 C -0.290 4.290 8 C 0.595 3.405 9 O -0.518 6.518 10 N -0.701 5.701 11 C 0.142 3.858 12 H 0.111 0.889 13 C 0.129 3.871 14 N -0.600 5.600 15 C -0.239 4.239 16 H 0.093 0.907 17 C 0.021 3.979 18 N -0.907 5.907 19 Si 0.882 3.118 20 H -0.287 1.287 21 H -0.301 1.301 22 H -0.275 1.275 23 C 0.083 3.917 24 C 0.083 3.917 25 H 0.069 0.931 26 O -0.557 6.557 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.407 0.593 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.036 0.964 35 H 0.068 0.932 36 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 20.535 -11.389 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.020 3.980 3 N -0.182 5.182 4 C -0.225 4.225 5 Cl 0.063 6.937 6 S 0.498 5.502 7 C -0.415 4.415 8 C 0.380 3.620 9 O -0.396 6.396 10 N -0.352 5.352 11 C 0.037 3.963 12 H 0.129 0.871 13 C 0.003 3.997 14 N -0.327 5.327 15 C -0.366 4.366 16 H 0.111 0.889 17 C -0.177 4.177 18 N -0.550 5.550 19 Si 0.712 3.288 20 H -0.214 1.214 21 H -0.229 1.229 22 H -0.201 1.201 23 C -0.043 4.043 24 C 0.023 3.977 25 H 0.087 0.913 26 O -0.363 6.363 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.243 0.757 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.678 20.832 -10.972 23.831 hybrid contribution -0.262 -0.714 -0.994 1.252 sum 3.416 20.119 -11.966 23.657 Atomic orbital electron populations 1.20729 0.85058 1.04827 1.04257 1.20501 0.98706 0.83952 0.94855 1.65804 1.03358 1.32294 1.16741 1.27365 0.93120 0.95302 1.06685 1.98451 1.54466 1.44480 1.96335 1.84169 1.04510 0.96855 1.64665 1.25749 0.96035 0.99673 1.20024 1.16576 0.86341 0.82153 0.76975 1.90813 1.13992 1.84626 1.50167 1.45692 1.10046 1.05434 1.74011 1.22248 0.96730 0.78737 0.98627 0.87086 1.21733 0.98418 0.86601 0.92970 1.44634 1.76383 1.07616 1.04088 1.18637 1.45509 0.86886 0.85526 0.88919 1.25000 1.00099 0.95688 0.96934 1.69845 1.46691 1.04635 1.33854 0.87009 0.79752 0.77911 0.84151 1.21407 1.22858 1.20117 1.22685 0.99051 0.94949 0.87658 1.23241 0.82752 0.94963 0.96786 0.91283 1.86261 1.15405 1.50297 1.84379 0.89581 0.90508 0.87668 0.75724 0.94122 0.94111 0.92636 0.94664 0.91383 0.76801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.69 36.01 0.35 -0.61 16 2 C 0.16 1.91 6.79 -83.89 -0.57 1.34 16 3 N -0.46 -5.59 10.51 -8.63 -0.09 -5.68 16 4 C 0.08 0.79 8.03 51.82 0.42 1.20 16 5 Cl 0.04 0.30 29.33 -51.86 -1.52 -1.22 16 6 S 0.25 2.32 22.35 -107.50 -2.40 -0.08 16 7 C -0.29 -3.53 6.48 -37.14 -0.24 -3.77 16 8 C 0.60 8.44 7.77 -12.89 -0.10 8.34 16 9 O -0.52 -8.50 13.91 5.19 0.07 -8.43 16 10 N -0.70 -9.73 5.07 -53.36 -0.27 -10.00 16 11 C 0.14 2.28 3.20 -66.10 -0.21 2.07 16 12 H 0.11 1.77 7.55 -51.93 -0.39 1.38 16 13 C 0.13 2.59 7.01 -2.92 -0.02 2.57 16 14 N -0.60 -14.11 3.22 -169.86 -0.55 -14.65 16 15 C -0.24 -6.67 10.58 -15.06 -0.16 -6.83 16 16 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 17 C 0.02 0.61 5.43 -17.43 -0.09 0.51 16 18 N -0.91 -27.52 13.97 55.49 0.78 -26.75 16 19 Si 0.88 21.76 24.27 -169.99 -4.13 17.64 16 20 H -0.29 -6.63 6.48 56.52 0.37 -6.27 16 21 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 22 H -0.28 -6.71 6.65 56.52 0.38 -6.34 16 23 C 0.08 1.65 4.42 -2.53 -0.01 1.64 16 24 C 0.08 1.26 4.29 -24.58 -0.11 1.16 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 O -0.56 -7.74 12.24 -35.23 -0.43 -8.17 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 1.23 6.01 -51.93 -0.31 0.92 16 30 H 0.41 5.11 6.77 -40.82 -0.28 4.83 16 31 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.04 0.73 5.57 -51.93 -0.29 0.44 16 35 H 0.07 1.42 6.63 -51.93 -0.34 1.07 16 36 H 0.38 4.01 9.11 45.56 0.42 4.42 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -32.63 327.41 -7.28 -39.91 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -2.92 Total: 4.90 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.75 Total: 7.61 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.13 Total: -57.08 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.36 Total: -16.61 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.13 Total: 17.64 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.40 Total: -0.08 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.52 Total: -1.22 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.63 -7.28 -39.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083491959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.951 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds