Wall clock time and date at job start Tue Mar 31 2020 17:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30943 * 122.89553 * 2 1 4 4 C 1.29590 * 117.32053 * 180.30694 * 3 2 1 5 5 Cl 1.73605 * 124.80593 * 179.77102 * 4 3 2 6 6 S 1.70945 * 110.37993 * 359.75130 * 4 3 2 7 7 C 1.35664 * 122.89483 * 179.84615 * 2 1 3 8 8 C 1.46585 * 126.12010 * 359.97438 * 7 2 1 9 9 O 1.21695 * 120.00162 * 359.71522 * 8 7 2 10 10 N 1.34782 * 120.00011 * 179.71117 * 8 7 2 11 11 C 1.46496 * 120.00001 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.64085 * 31.86174 * 11 10 8 13 13 C 1.54326 * 110.72058 * 268.52400 * 11 10 8 14 14 N 1.47283 * 107.30758 * 219.45595 * 13 11 10 15 15 C 1.36940 * 125.79385 * 178.92945 * 14 13 11 16 16 H 1.07998 * 120.00050 * 341.51182 * 15 14 13 17 17 C 1.38813 * 119.99845 * 161.52064 * 15 14 13 18 18 N 1.31625 * 119.99502 * 157.60351 * 17 15 14 19 19 Si 1.86792 * 120.00162 * 337.60447 * 17 15 14 20 20 H 1.48498 * 109.47196 * 84.54220 * 19 17 15 21 21 H 1.48510 * 109.47106 * 204.53762 * 19 17 15 22 22 H 1.48492 * 109.47267 * 324.53766 * 19 17 15 23 23 C 1.47426 * 108.55833 * 358.92209 * 14 13 11 24 24 C 1.54908 * 104.92948 * 24.15781 * 23 14 13 25 25 H 1.08996 * 111.00537 * 204.82150 * 24 23 14 26 26 O 1.42902 * 111.00171 * 81.00575 * 24 23 14 27 27 H 1.08998 * 109.46738 * 270.15136 * 1 2 3 28 28 H 1.08995 * 109.47197 * 30.15582 * 1 2 3 29 29 H 1.09005 * 109.46730 * 150.15338 * 1 2 3 30 30 H 0.96996 * 119.99780 * 0.02562 * 10 8 7 31 31 H 1.09001 * 109.88166 * 338.86731 * 13 11 10 32 32 H 1.09005 * 109.88148 * 100.02356 * 13 11 10 33 33 H 0.97002 * 119.99552 * 179.97438 * 18 17 15 34 34 H 1.09001 * 110.36505 * 265.26095 * 23 14 13 35 35 H 1.09001 * 110.36209 * 143.05158 * 23 14 13 36 36 H 0.96694 * 114.00092 * 61.46057 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2182 1.0995 0.0000 4 6 3.5080 0.9736 -0.0062 5 17 4.6327 2.2960 -0.0131 6 16 3.9448 -0.6791 -0.0060 7 6 2.2438 -1.1391 0.0031 8 6 1.7189 -2.5077 0.0073 9 8 0.5170 -2.6984 0.0135 10 7 2.5673 -3.5550 0.0041 11 6 2.0427 -4.9228 0.0078 12 1 1.0937 -4.9717 -0.5262 13 6 1.8887 -5.4447 1.4519 14 7 2.3042 -6.8577 1.4538 15 6 2.3359 -7.6817 2.5471 16 1 2.3345 -7.2601 3.5413 17 6 2.3700 -9.0590 2.3773 18 7 2.8336 -9.8292 3.3387 19 14 1.7581 -9.8192 0.7846 20 1 2.8483 -9.8012 -0.2235 21 1 1.3383 -11.2216 1.0346 22 1 0.6011 -9.0394 0.2764 23 6 2.6807 -7.2379 0.0801 24 6 3.0712 -5.9069 -0.6096 25 1 2.9470 -5.9757 -1.6902 26 8 4.4076 -5.5287 -0.2733 27 1 -0.3633 0.0027 1.0277 28 1 -0.3633 0.8885 -0.5162 29 1 -0.3633 -0.8914 -0.5115 30 1 3.5253 -3.4030 -0.0005 31 1 2.5266 -4.8702 2.1237 32 1 0.8481 -5.3639 1.7663 33 1 2.8571 -10.7917 3.2202 34 1 1.8348 -7.6966 -0.4319 35 1 3.5300 -7.9210 0.0949 36 1 5.0790 -6.1655 -0.5538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083491959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:36 Heat of formation + Delta-G solvation = -31.142816 kcal Electronic energy + Delta-G solvation = -23643.530876 eV Core-core repulsion = 19894.836572 eV Total energy + Delta-G solvation = -3748.694304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70339 -40.76994 -39.47191 -38.17713 -36.49167 -35.63585 -33.98413 -32.94896 -31.05406 -29.74263 -28.86252 -26.28332 -26.01395 -23.41503 -22.85585 -21.56575 -20.91622 -19.76266 -19.25422 -18.36166 -18.08652 -17.39535 -17.21351 -16.84872 -16.55754 -15.91222 -15.65877 -15.58861 -15.18011 -14.92442 -14.63595 -14.57729 -14.13750 -14.00474 -13.58814 -13.31772 -13.14185 -12.81405 -12.79668 -12.73869 -12.70505 -12.53494 -12.12817 -12.11374 -11.57636 -11.35624 -11.12562 -11.00361 -10.82738 -10.72782 -10.27840 -9.93345 -9.08842 -8.18793 -5.46989 -1.16110 -0.59718 0.16984 0.56291 1.06696 1.28182 1.42019 1.49973 1.79321 1.90691 2.40180 2.99593 3.06829 3.13878 3.29798 3.60217 3.62444 3.73562 3.84716 4.09496 4.26460 4.43863 4.55271 4.68396 4.72196 4.76136 4.78181 4.85550 4.97363 5.19981 5.32555 5.62167 6.07464 6.13699 6.32443 6.69139 6.82775 6.96866 7.49359 8.03472 9.01106 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.002907 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.022229 B = 9629.111761 C =10082.684494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.156 3.844 3 N -0.484 5.484 4 C 0.070 3.930 5 Cl 0.053 6.947 6 S 0.305 5.695 7 C -0.317 4.317 8 C 0.598 3.402 9 O -0.544 6.544 10 N -0.693 5.693 11 C 0.152 3.848 12 H 0.118 0.882 13 C 0.127 3.873 14 N -0.617 5.617 15 C -0.238 4.238 16 H 0.051 0.949 17 C -0.037 4.037 18 N -0.957 5.957 19 Si 0.950 3.050 20 H -0.255 1.255 21 H -0.310 1.310 22 H -0.269 1.269 23 C 0.071 3.929 24 C 0.105 3.895 25 H 0.116 0.884 26 O -0.562 6.562 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.414 0.586 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.264 0.736 34 H 0.039 0.961 35 H 0.061 0.939 36 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 21.782 -14.296 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.017 3.983 3 N -0.203 5.203 4 C -0.230 4.230 5 Cl 0.080 6.920 6 S 0.559 5.441 7 C -0.441 4.441 8 C 0.384 3.616 9 O -0.424 6.424 10 N -0.345 5.345 11 C 0.046 3.954 12 H 0.135 0.865 13 C 0.001 3.999 14 N -0.345 5.345 15 C -0.366 4.366 16 H 0.069 0.931 17 C -0.231 4.231 18 N -0.603 5.603 19 Si 0.778 3.222 20 H -0.181 1.181 21 H -0.239 1.239 22 H -0.194 1.194 23 C -0.054 4.054 24 C 0.044 3.956 25 H 0.133 0.867 26 O -0.371 6.371 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.252 0.748 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.722 22.122 -13.923 26.562 hybrid contribution -0.478 -0.958 0.025 1.071 sum 4.244 21.164 -13.898 25.673 Atomic orbital electron populations 1.20711 0.84684 1.04937 1.04361 1.20680 0.99278 0.84084 0.94273 1.65859 1.04083 1.32377 1.17940 1.27677 0.93193 0.96565 1.05536 1.98461 1.53563 1.43807 1.96127 1.83922 1.01727 0.95316 1.63168 1.25585 0.98110 0.98589 1.21857 1.16771 0.85966 0.82813 0.76094 1.90802 1.15168 1.85207 1.51237 1.45531 1.10425 1.04543 1.74006 1.22014 0.97874 0.79991 0.95558 0.86462 1.21789 0.97008 0.85069 0.96043 1.44664 1.76916 1.08286 1.04597 1.18501 1.44612 0.87765 0.85754 0.93138 1.25680 1.00469 0.96018 1.00953 1.69984 1.48757 1.04833 1.36741 0.85902 0.79921 0.75984 0.80417 1.18054 1.23891 1.19431 1.22923 0.98785 0.97831 0.85893 1.23119 0.82937 0.91132 0.98415 0.86663 1.86234 1.15249 1.50892 1.84762 0.89448 0.89087 0.88770 0.74788 0.95305 0.95752 0.92740 0.94331 0.92120 0.74716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.83 9.69 71.24 0.69 -1.14 16 2 C 0.16 3.58 6.79 42.10 0.29 3.86 16 3 N -0.48 -10.87 10.51 -181.20 -1.90 -12.78 16 4 C 0.07 1.30 8.03 130.57 1.05 2.35 16 5 Cl 0.05 0.78 29.33 -2.72 -0.08 0.70 16 6 S 0.31 5.03 22.35 -56.49 -1.26 3.77 16 7 C -0.32 -7.21 6.48 23.85 0.15 -7.06 16 8 C 0.60 16.14 7.77 86.42 0.67 16.81 16 9 O -0.54 -17.53 13.91 -4.33 -0.06 -17.59 16 10 N -0.69 -17.80 5.07 -440.96 -2.23 -20.04 16 11 C 0.15 4.55 3.20 46.18 0.15 4.70 16 12 H 0.12 3.46 7.55 -2.39 -0.02 3.44 16 13 C 0.13 5.11 7.01 86.68 0.61 5.72 16 14 N -0.62 -28.97 3.22 -691.31 -2.22 -31.20 16 15 C -0.24 -13.72 10.58 84.03 0.89 -12.83 16 16 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 17 C -0.04 -2.13 5.43 84.86 0.46 -1.67 16 18 N -0.96 -59.90 13.97 21.65 0.30 -59.60 16 19 Si 0.95 44.82 24.27 68.60 1.66 46.48 16 20 H -0.26 -10.68 6.48 99.48 0.65 -10.03 16 21 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 22 H -0.27 -12.28 6.65 99.48 0.66 -11.62 16 23 C 0.07 2.64 4.42 86.85 0.38 3.03 16 24 C 0.10 2.77 4.29 31.99 0.14 2.91 16 25 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 26 O -0.56 -13.57 12.24 -148.98 -1.82 -15.40 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 2.18 6.01 -2.38 -0.01 2.16 16 30 H 0.41 9.26 6.77 -92.71 -0.63 8.64 16 31 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 32 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 34 H 0.04 1.46 5.57 -2.39 -0.01 1.44 16 35 H 0.06 2.36 6.63 -2.39 -0.02 2.34 16 36 H 0.40 6.78 9.11 -74.06 -0.67 6.10 16 Total: -1.00 -72.75 327.41 -2.38 -75.14 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -0.24 Total: 13.83 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 5.48 Total: 16.68 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -6.06 Total: -123.61 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.88 Total: -32.99 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.66 Total: 46.48 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.26 Total: 3.77 kcal Atomic # 17 Polarization: 0.78 SS G_CDS: -0.08 Total: 0.70 kcal Total: -72.75 -2.38 -75.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083491959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.996 kcal (2) G-P(sol) polarization free energy of solvation -72.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds