Wall clock time and date at job start Tue Mar 31 2020 17:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00068 * 2 1 4 4 C 1.52996 * 109.47474 * 277.96236 * 3 2 1 5 5 H 1.09006 * 112.95964 * 50.03661 * 4 3 2 6 6 C 1.53938 * 113.77134 * 181.71887 * 4 3 2 7 7 C 1.53951 * 86.29085 * 137.90921 * 6 4 3 8 8 N 1.47585 * 86.23895 * 336.33559 * 7 6 4 9 9 C 1.36926 * 134.49640 * 204.69574 * 8 7 6 10 10 H 1.08001 * 120.00564 * 187.28014 * 9 8 7 11 11 C 1.38822 * 119.99837 * 7.27623 * 9 8 7 12 12 N 1.31618 * 119.99591 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00066 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47204 * 59.99424 * 13 11 9 15 15 H 1.48492 * 109.46858 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46721 * 300.00083 * 13 11 9 17 17 C 1.34773 * 119.99778 * 179.97438 * 2 1 3 18 18 O 1.21721 * 119.99700 * 185.77364 * 17 2 1 19 19 C 1.46536 * 120.00543 * 5.77350 * 17 2 1 20 20 C 1.37964 * 126.22878 * 185.86989 * 19 17 2 21 21 C 1.39789 * 107.13057 * 179.88097 * 20 19 17 22 22 Cl 1.73599 * 126.06203 * 180.14673 * 21 20 19 23 23 C 1.35720 * 107.87725 * 0.39102 * 21 20 19 24 24 Cl 1.73602 * 125.58610 * 179.75791 * 23 21 20 25 25 N 1.35662 * 108.83048 * 359.75355 * 23 21 20 26 26 H 0.97008 * 125.69732 * 180.02562 * 25 23 21 27 27 H 1.08999 * 109.47267 * 95.91900 * 1 2 3 28 28 H 1.09006 * 109.47228 * 215.91601 * 1 2 3 29 29 H 1.08995 * 109.47600 * 335.92079 * 1 2 3 30 30 H 1.08997 * 109.47385 * 157.95652 * 3 2 1 31 31 H 1.09004 * 109.46738 * 37.96143 * 3 2 1 32 32 H 1.08999 * 113.74342 * 23.56427 * 6 4 3 33 33 H 1.09004 * 113.83982 * 252.26416 * 6 4 3 34 34 H 1.08997 * 113.77028 * 90.69351 * 7 6 4 35 35 H 1.08997 * 113.76627 * 221.98081 * 7 6 4 36 36 H 0.97000 * 119.99443 * 180.02562 * 12 11 9 37 37 H 1.07997 * 126.43415 * 0.03261 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2795 1.8103 -1.4285 5 1 1.3128 1.8303 -1.9318 6 6 3.0691 3.1263 -1.5488 7 6 3.6942 2.5187 -2.8177 8 7 3.3617 1.2043 -2.2347 9 6 3.8574 -0.0637 -2.3813 10 1 3.3532 -0.8978 -1.9160 11 6 5.0080 -0.2771 -3.1281 12 7 5.6226 0.7395 -3.6948 13 14 5.6838 -2.0070 -3.3287 14 1 4.6648 -2.8633 -3.9870 15 1 6.9100 -1.9653 -4.1653 16 1 6.0136 -2.5674 -1.9936 17 6 2.1388 -1.1672 0.0005 18 8 3.3514 -1.1698 0.1066 19 6 1.4118 -2.4331 -0.1266 20 6 1.9536 -3.6981 -0.0281 21 6 0.9088 -4.6088 -0.2095 22 17 1.0445 -6.3392 -0.1776 23 6 -0.2295 -3.9005 -0.4203 24 17 -1.8026 -4.5774 -0.7048 25 7 0.0633 -2.5767 -0.3722 26 1 -0.5707 -1.8521 -0.4906 27 1 -0.3634 -0.1060 -1.0222 28 1 -0.3634 -0.8323 0.6029 29 1 -0.3634 0.9382 0.4193 30 1 3.2040 1.1071 0.3857 31 1 1.6774 1.9884 0.6322 32 1 3.7831 3.2851 -0.7407 33 1 2.4447 3.9987 -1.7418 34 1 3.1440 2.7462 -3.7307 35 1 4.7650 2.7001 -2.9100 36 1 6.4263 0.5903 -4.2170 37 1 2.9899 -3.9393 0.1570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085750740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:59 Heat of formation + Delta-G solvation = 88.281405 kcal Electronic energy + Delta-G solvation = -24513.163407 eV Core-core repulsion = 20767.604020 eV Total energy + Delta-G solvation = -3745.559387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.70024 -39.24315 -37.57562 -36.97596 -36.52650 -35.37695 -32.05021 -31.38727 -29.77925 -28.15089 -27.73918 -26.56952 -23.28397 -23.21511 -21.63378 -20.89819 -20.33678 -19.03361 -17.86739 -16.87702 -16.46311 -15.89386 -15.63115 -14.87734 -14.86424 -14.62064 -13.92015 -13.86715 -13.61607 -13.44112 -13.25154 -12.96124 -12.82898 -12.34813 -12.04748 -11.88100 -11.60378 -11.55519 -11.37661 -11.04850 -10.95334 -10.83083 -10.57426 -10.47893 -10.00599 -9.68055 -9.63638 -9.23601 -9.08236 -8.61852 -8.37420 -8.24291 -6.71092 -5.57393 -2.89267 1.21661 1.30650 2.03592 2.19279 2.95318 3.30752 3.52254 3.55623 3.58462 3.64044 4.49109 4.61998 4.70490 4.81498 5.06773 5.16285 5.26773 5.35354 5.53949 5.61524 5.64203 5.76324 5.87747 5.96459 6.14479 6.30252 6.35572 6.40777 6.64462 6.69816 6.76292 6.87713 7.33760 7.46036 7.59138 7.76444 8.18569 8.45564 9.24519 9.91299 10.74722 11.58657 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.004618 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.977807 B = 6062.016584 C = 7509.086722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.611 5.611 3 C 0.117 3.883 4 C 0.122 3.878 5 H 0.041 0.959 6 C -0.157 4.157 7 C 0.150 3.850 8 N -0.596 5.596 9 C -0.200 4.200 10 H 0.086 0.914 11 C -0.010 4.010 12 N -0.927 5.927 13 Si 0.902 3.098 14 H -0.288 1.288 15 H -0.293 1.293 16 H -0.279 1.279 17 C 0.580 3.420 18 O -0.472 6.472 19 C 0.002 3.998 20 C -0.095 4.095 21 C -0.094 4.094 22 Cl -0.034 7.034 23 C 0.084 3.916 24 Cl -0.005 7.005 25 N -0.528 5.528 26 H 0.429 0.571 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.020 0.980 35 H 0.081 0.919 36 H 0.249 0.751 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.444 -4.217 9.574 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.345 5.345 3 C -0.006 4.006 4 C 0.013 3.987 5 H 0.058 0.942 6 C -0.196 4.196 7 C 0.025 3.975 8 N -0.321 5.321 9 C -0.328 4.328 10 H 0.104 0.896 11 C -0.205 4.205 12 N -0.576 5.576 13 Si 0.732 3.268 14 H -0.215 1.215 15 H -0.219 1.219 16 H -0.205 1.205 17 C 0.366 3.634 18 O -0.343 6.343 19 C -0.112 4.112 20 C -0.121 4.121 21 C -0.129 4.129 22 Cl -0.006 7.006 23 C -0.060 4.060 24 Cl 0.024 6.976 25 N -0.138 5.138 26 H 0.277 0.723 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.740 -4.501 9.474 18.914 hybrid contribution -0.423 -0.899 -0.577 1.149 sum -16.163 -5.400 8.897 19.223 Atomic orbital electron populations 1.22050 0.81724 1.03430 1.01067 1.47550 1.05558 1.06718 1.74665 1.22047 0.98143 0.82161 0.98235 1.22720 0.93104 0.91756 0.91072 0.94168 1.23770 0.99346 0.95029 1.01411 1.22305 1.00468 0.83593 0.91171 1.46068 1.34402 1.04526 1.47150 1.19196 1.04930 0.82770 1.25866 0.89603 1.24707 0.97725 0.97099 1.01011 1.69807 1.20623 1.28661 1.38469 0.86322 0.78148 0.84462 0.77829 1.21531 1.21937 1.20500 1.16706 0.86804 0.81342 0.78537 1.91006 1.11675 1.85413 1.46204 1.20737 0.81521 0.96164 1.12807 1.21162 0.99497 0.88311 1.03167 1.19604 0.92631 0.86103 1.14600 1.98334 1.98065 1.06701 1.97484 1.20573 0.88374 0.84502 1.12526 1.98403 1.22014 1.82386 1.94834 1.43111 1.09516 1.05893 1.55255 0.72266 0.92511 0.91750 0.89415 0.88296 0.91366 0.90619 0.93234 0.96262 0.90119 0.94060 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 8.82 59.85 0.53 1.13 16 2 N -0.61 -9.35 2.88 -183.18 -0.53 -9.88 16 3 C 0.12 1.92 5.43 -4.05 -0.02 1.90 16 4 C 0.12 2.32 4.53 -66.67 -0.30 2.02 16 5 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.16 -2.84 7.86 -25.79 -0.20 -3.04 16 7 C 0.15 3.53 7.70 -2.97 -0.02 3.50 16 8 N -0.60 -15.02 3.58 -169.63 -0.61 -15.63 16 9 C -0.20 -5.69 9.43 -15.06 -0.14 -5.83 16 10 H 0.09 2.42 4.41 -52.49 -0.23 2.19 16 11 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -28.48 11.27 55.49 0.63 -27.85 16 13 Si 0.90 23.96 29.55 -169.99 -5.02 18.93 16 14 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 15 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 16 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 17 C 0.58 10.61 6.03 -12.92 -0.08 10.53 16 18 O -0.47 -10.78 13.87 5.17 0.07 -10.71 16 19 C 0.00 0.03 6.65 -81.93 -0.55 -0.52 16 20 C -0.10 -1.50 10.65 -39.10 -0.42 -1.92 16 21 C -0.09 -1.32 6.66 -39.90 -0.27 -1.59 16 22 Cl -0.03 -0.44 29.12 -51.86 -1.51 -1.95 16 23 C 0.08 1.05 7.75 -16.76 -0.13 0.92 16 24 Cl 0.00 -0.05 29.13 -51.86 -1.51 -1.56 16 25 N -0.53 -6.46 5.10 -6.51 -0.03 -6.50 16 26 H 0.43 4.06 4.86 -40.82 -0.20 3.86 16 27 H 0.06 0.53 7.54 -51.93 -0.39 0.14 16 28 H 0.06 0.53 5.55 -51.93 -0.29 0.24 16 29 H 0.09 0.64 7.92 -51.93 -0.41 0.23 16 30 H 0.10 1.96 7.14 -51.93 -0.37 1.59 16 31 H 0.07 0.85 7.99 -51.93 -0.41 0.44 16 32 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 2.14 6.85 -51.93 -0.36 1.78 16 36 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -34.37 333.97 -9.09 -43.46 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -3.91 Total: -0.06 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.69 Total: 6.71 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.54 Total: -59.86 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.02 Total: 18.93 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -3.02 Total: -3.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.37 -9.09 -43.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085750740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.740 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds