Wall clock time and date at job start Tue Mar 31 2020 17:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00068 * 2 1 4 4 C 1.52996 * 109.47474 * 277.96236 * 3 2 1 5 5 H 1.09006 * 112.95964 * 50.03661 * 4 3 2 6 6 C 1.53938 * 113.77134 * 181.71887 * 4 3 2 7 7 C 1.53951 * 86.29085 * 137.90921 * 6 4 3 8 8 N 1.47585 * 86.23895 * 336.33559 * 7 6 4 9 9 C 1.36926 * 134.49640 * 204.69574 * 8 7 6 10 10 H 1.08001 * 120.00564 * 187.28014 * 9 8 7 11 11 C 1.38822 * 119.99837 * 7.27623 * 9 8 7 12 12 N 1.31618 * 119.99591 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00066 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47204 * 59.99424 * 13 11 9 15 15 H 1.48492 * 109.46858 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46721 * 300.00083 * 13 11 9 17 17 C 1.34773 * 119.99778 * 179.97438 * 2 1 3 18 18 O 1.21721 * 119.99700 * 185.77364 * 17 2 1 19 19 C 1.46536 * 120.00543 * 5.77350 * 17 2 1 20 20 C 1.37964 * 126.22878 * 185.86989 * 19 17 2 21 21 C 1.39789 * 107.13057 * 179.88097 * 20 19 17 22 22 Cl 1.73599 * 126.06203 * 180.14673 * 21 20 19 23 23 C 1.35720 * 107.87725 * 0.39102 * 21 20 19 24 24 Cl 1.73602 * 125.58610 * 179.75791 * 23 21 20 25 25 N 1.35662 * 108.83048 * 359.75355 * 23 21 20 26 26 H 0.97008 * 125.69732 * 180.02562 * 25 23 21 27 27 H 1.08999 * 109.47267 * 95.91900 * 1 2 3 28 28 H 1.09006 * 109.47228 * 215.91601 * 1 2 3 29 29 H 1.08995 * 109.47600 * 335.92079 * 1 2 3 30 30 H 1.08997 * 109.47385 * 157.95652 * 3 2 1 31 31 H 1.09004 * 109.46738 * 37.96143 * 3 2 1 32 32 H 1.08999 * 113.74342 * 23.56427 * 6 4 3 33 33 H 1.09004 * 113.83982 * 252.26416 * 6 4 3 34 34 H 1.08997 * 113.77028 * 90.69351 * 7 6 4 35 35 H 1.08997 * 113.76627 * 221.98081 * 7 6 4 36 36 H 0.97000 * 119.99443 * 180.02562 * 12 11 9 37 37 H 1.07997 * 126.43415 * 0.03261 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2795 1.8103 -1.4285 5 1 1.3128 1.8303 -1.9318 6 6 3.0691 3.1263 -1.5488 7 6 3.6942 2.5187 -2.8177 8 7 3.3617 1.2043 -2.2347 9 6 3.8574 -0.0637 -2.3813 10 1 3.3532 -0.8978 -1.9160 11 6 5.0080 -0.2771 -3.1281 12 7 5.6226 0.7395 -3.6948 13 14 5.6838 -2.0070 -3.3287 14 1 4.6648 -2.8633 -3.9870 15 1 6.9100 -1.9653 -4.1653 16 1 6.0136 -2.5674 -1.9936 17 6 2.1388 -1.1672 0.0005 18 8 3.3514 -1.1698 0.1066 19 6 1.4118 -2.4331 -0.1266 20 6 1.9536 -3.6981 -0.0281 21 6 0.9088 -4.6088 -0.2095 22 17 1.0445 -6.3392 -0.1776 23 6 -0.2295 -3.9005 -0.4203 24 17 -1.8026 -4.5774 -0.7048 25 7 0.0633 -2.5767 -0.3722 26 1 -0.5707 -1.8521 -0.4906 27 1 -0.3634 -0.1060 -1.0222 28 1 -0.3634 -0.8323 0.6029 29 1 -0.3634 0.9382 0.4193 30 1 3.2040 1.1071 0.3857 31 1 1.6774 1.9884 0.6322 32 1 3.7831 3.2851 -0.7407 33 1 2.4447 3.9987 -1.7418 34 1 3.1440 2.7462 -3.7307 35 1 4.7650 2.7001 -2.9100 36 1 6.4263 0.5903 -4.2170 37 1 2.9899 -3.9393 0.1570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085750740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:58 Heat of formation + Delta-G solvation = 65.492654 kcal Electronic energy + Delta-G solvation = -24514.151601 eV Core-core repulsion = 20767.604020 eV Total energy + Delta-G solvation = -3746.547582 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.82159 -40.61434 -39.19815 -37.93150 -37.57022 -36.67497 -34.13279 -32.53635 -31.03902 -29.77429 -29.26893 -27.69879 -25.19339 -24.72451 -22.85540 -22.07303 -21.49640 -20.77794 -19.04279 -18.72912 -17.67916 -17.23887 -16.94609 -16.62598 -15.99099 -15.86108 -15.72976 -15.25131 -15.04833 -14.68108 -14.49652 -14.37435 -14.13543 -13.37379 -13.33111 -13.02729 -13.00169 -12.91431 -12.87781 -12.60232 -12.50287 -12.38716 -12.32212 -12.00123 -11.78153 -11.42057 -11.30233 -11.05260 -10.69646 -10.20694 -9.69514 -9.36066 -8.72827 -7.78071 -5.07169 0.06065 0.28201 0.99212 1.05502 1.37860 1.42205 1.49415 1.79240 2.21881 2.26713 2.52982 3.34001 3.45090 3.52248 3.72121 3.95338 4.03440 4.17221 4.24886 4.38179 4.44125 4.47951 4.55739 4.66231 4.77854 4.94733 4.99565 5.10751 5.16184 5.21314 5.43665 5.52685 5.73069 5.81826 5.87886 6.10220 6.32511 7.06681 7.14526 7.77026 8.68603 9.37938 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.004618 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.977807 B = 6062.016584 C = 7509.086722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.608 5.608 3 C 0.122 3.878 4 C 0.125 3.875 5 H 0.064 0.936 6 C -0.126 4.126 7 C 0.136 3.864 8 N -0.628 5.628 9 C -0.180 4.180 10 H 0.086 0.914 11 C -0.078 4.078 12 N -0.959 5.959 13 Si 0.946 3.054 14 H -0.283 1.283 15 H -0.295 1.295 16 H -0.286 1.286 17 C 0.574 3.426 18 O -0.535 6.535 19 C -0.015 4.015 20 C -0.110 4.110 21 C -0.109 4.109 22 Cl -0.026 7.026 23 C 0.100 3.900 24 Cl 0.025 6.975 25 N -0.509 5.509 26 H 0.443 0.557 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.125 0.875 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.016 0.984 35 H 0.040 0.960 36 H 0.239 0.761 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.438 -3.720 10.677 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.341 5.341 3 C -0.001 4.001 4 C 0.019 3.981 5 H 0.082 0.918 6 C -0.165 4.165 7 C 0.011 3.989 8 N -0.355 5.355 9 C -0.309 4.309 10 H 0.104 0.896 11 C -0.269 4.269 12 N -0.611 5.611 13 Si 0.777 3.223 14 H -0.210 1.210 15 H -0.222 1.222 16 H -0.213 1.213 17 C 0.362 3.638 18 O -0.411 6.411 19 C -0.129 4.129 20 C -0.137 4.137 21 C -0.144 4.144 22 Cl 0.003 6.997 23 C -0.045 4.045 24 Cl 0.053 6.947 25 N -0.119 5.119 26 H 0.294 0.706 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.143 0.857 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.034 0.966 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -19.844 -3.969 10.597 22.844 hybrid contribution 0.599 -1.075 -0.843 1.492 sum -19.245 -5.044 9.754 22.157 Atomic orbital electron populations 1.22444 0.77977 1.06313 1.02478 1.47660 1.07921 1.05394 1.73079 1.21900 0.97472 0.83690 0.97059 1.22993 0.92347 0.91120 0.91649 0.91835 1.23500 0.98943 0.96151 0.97873 1.22312 0.98598 0.84261 0.93734 1.46462 1.36562 1.03892 1.48535 1.19467 1.03938 0.84525 1.22982 0.89625 1.25320 0.99157 0.99497 1.02895 1.69971 1.21089 1.29646 1.40411 0.85588 0.77618 0.81942 0.77135 1.20979 1.22167 1.21304 1.17104 0.86375 0.82779 0.77498 1.90971 1.14311 1.86454 1.49356 1.20299 0.82871 0.95042 1.14687 1.21213 0.99604 0.89293 1.03571 1.19635 0.92709 0.86613 1.15433 1.98333 1.98085 1.05806 1.97493 1.20683 0.89231 0.84365 1.10210 1.98424 1.19750 1.81966 1.94516 1.43007 1.08430 1.06321 1.54171 0.70573 0.91453 0.90083 0.85701 0.92288 0.85913 0.90526 0.88642 0.96612 0.94120 0.95174 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.74 8.82 127.77 1.13 1.87 16 2 N -0.61 -17.06 2.88 -851.68 -2.45 -19.51 16 3 C 0.12 3.66 5.43 86.38 0.47 4.13 16 4 C 0.13 4.41 4.53 45.02 0.20 4.61 16 5 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 6 C -0.13 -4.21 7.86 31.25 0.25 -3.97 16 7 C 0.14 6.44 7.70 86.48 0.67 7.11 16 8 N -0.63 -31.69 3.58 -690.58 -2.47 -34.16 16 9 C -0.18 -10.45 9.43 84.04 0.79 -9.66 16 10 H 0.09 4.93 4.41 -2.91 -0.01 4.92 16 11 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 12 N -0.96 -61.56 11.27 21.65 0.24 -61.32 16 13 Si 0.95 51.27 29.55 68.60 2.03 53.30 16 14 H -0.28 -14.81 7.11 99.48 0.71 -14.11 16 15 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 16 H -0.29 -15.61 7.11 99.48 0.71 -14.90 16 17 C 0.57 20.80 6.03 86.41 0.52 21.33 16 18 O -0.53 -25.29 13.87 -4.42 -0.06 -25.36 16 19 C -0.01 -0.44 6.65 40.30 0.27 -0.17 16 20 C -0.11 -3.49 10.65 22.58 0.24 -3.25 16 21 C -0.11 -2.93 6.66 22.06 0.15 -2.78 16 22 Cl -0.03 -0.63 29.12 -2.72 -0.08 -0.71 16 23 C 0.10 2.26 7.75 83.52 0.65 2.91 16 24 Cl 0.02 0.43 29.13 -2.72 -0.08 0.35 16 25 N -0.51 -11.11 5.10 -174.51 -0.89 -12.00 16 26 H 0.44 6.70 4.86 -92.70 -0.45 6.25 16 27 H 0.07 0.93 7.54 -2.39 -0.02 0.91 16 28 H 0.08 0.96 5.55 -2.38 -0.01 0.95 16 29 H 0.12 1.01 7.92 -2.39 -0.02 0.99 16 30 H 0.06 2.31 7.14 -2.39 -0.02 2.29 16 31 H 0.12 2.39 7.99 -2.38 -0.02 2.37 16 32 H 0.08 2.57 8.10 -2.39 -0.02 2.55 16 33 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.04 2.24 6.85 -2.39 -0.02 2.22 16 36 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.15 5.14 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -80.44 333.97 2.71 -77.73 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 0.68 Total: 3.89 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 5.79 Total: 17.79 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -5.57 Total: -126.99 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.06 Total: -25.36 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.03 Total: 53.30 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.16 Total: -0.35 kcal Total: -80.44 2.71 -77.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085750740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.219 kcal (2) G-P(sol) polarization free energy of solvation -80.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds