Wall clock time and date at job start Tue Mar 31 2020 16:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99432 * 2 1 4 4 H 1.48505 * 109.46742 * 269.99612 * 3 2 1 5 5 H 1.48498 * 109.47296 * 29.99967 * 3 2 1 6 6 H 1.48498 * 109.46991 * 150.00111 * 3 2 1 7 7 C 1.38803 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00418 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00001 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.85061 * 336.20155 * 10 9 7 12 12 C 1.53782 * 113.61107 * 107.50217 * 10 9 7 13 13 C 1.53785 * 87.08069 * 139.97984 * 12 10 9 14 14 H 1.09006 * 113.68612 * 89.12534 * 13 12 10 15 15 C 1.52997 * 113.61712 * 220.01782 * 13 12 10 16 16 N 1.46505 * 109.47212 * 272.49768 * 15 13 12 17 17 C 1.34771 * 119.99622 * 179.97438 * 16 15 13 18 18 O 1.21715 * 120.00379 * 0.02562 * 17 16 15 19 19 C 1.46542 * 119.99608 * 179.97438 * 17 16 15 20 20 C 1.37968 * 126.22383 * 179.97438 * 19 17 16 21 21 C 1.39792 * 107.12817 * 179.97438 * 20 19 17 22 22 Cl 1.73599 * 126.06136 * 180.02562 * 21 20 19 23 23 C 1.35722 * 107.87427 * 0.02562 * 21 20 19 24 24 Cl 1.73602 * 125.57986 * 179.97438 * 23 21 20 25 25 N 1.35655 * 108.83358 * 359.74413 * 23 21 20 26 26 H 0.96998 * 125.69988 * 180.26989 * 25 23 21 27 27 C 1.53781 * 87.08073 * 334.56795 * 13 12 10 28 28 H 0.96997 * 120.00975 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99961 * 0.02562 * 9 7 2 30 30 H 1.08998 * 113.61542 * 25.43429 * 12 10 9 31 31 H 1.08998 * 113.61766 * 254.53138 * 12 10 9 32 32 H 1.09002 * 109.47153 * 152.49760 * 15 13 12 33 33 H 1.09001 * 109.46832 * 32.49951 * 15 13 12 34 34 H 0.96996 * 119.99606 * 0.02562 * 16 15 13 35 35 H 1.07992 * 126.43301 * 0.02562 * 20 19 17 36 36 H 1.09003 * 113.61181 * 139.97823 * 27 13 12 37 37 H 1.08994 * 113.61519 * 270.88008 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0659 -3.5637 -0.4048 12 6 1.9993 -4.4020 1.3444 13 6 1.8482 -5.6975 0.5296 14 1 2.7982 -6.1644 0.2694 15 6 0.8452 -6.6852 1.1291 16 7 1.5265 -7.5431 2.1018 17 6 0.8362 -8.4948 2.7606 18 8 -0.3531 -8.6419 2.5471 19 6 1.5177 -9.3534 3.7332 20 6 0.9397 -10.3619 4.4764 21 6 1.9475 -10.9181 5.2696 22 17 1.7573 -12.2264 6.3947 23 6 3.1009 -10.2539 5.0041 24 17 4.6417 -10.5723 5.7378 25 7 2.8536 -9.3039 4.0678 26 1 3.5075 -8.6908 3.6971 27 6 1.2604 -4.8288 -0.5949 28 1 -0.4851 0.8399 -0.0004 29 1 0.3557 -2.3881 -0.0002 30 1 1.1210 -4.1568 1.9415 31 1 2.9273 -4.3499 1.9137 32 1 0.4225 -7.3007 0.3350 33 1 0.0465 -6.1349 1.6265 34 1 2.4741 -7.4256 2.2721 35 1 -0.0964 -10.6651 4.4497 36 1 1.5921 -5.1212 -1.5912 37 1 0.1802 -4.7003 -0.5280 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086162277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:23 Heat of formation + Delta-G solvation = 23.827721 kcal Electronic energy + Delta-G solvation = -22253.693357 eV Core-core repulsion = 18505.339048 eV Total energy + Delta-G solvation = -3748.354309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.98162 -39.65393 -38.47608 -37.32348 -36.87758 -34.96960 -33.40612 -31.69402 -30.56117 -29.74653 -27.34110 -25.19108 -24.13092 -23.10296 -21.48745 -21.11403 -20.86125 -19.69108 -18.93607 -17.12153 -16.72508 -16.27686 -16.03186 -15.29916 -15.16040 -14.91465 -14.67127 -14.37783 -13.94632 -13.74178 -13.63702 -13.41609 -13.00693 -12.38341 -12.28920 -12.01040 -11.92769 -11.91884 -11.50741 -11.33423 -11.31263 -10.89895 -10.67221 -10.50329 -10.22282 -10.12456 -9.91674 -9.59532 -9.53231 -9.30921 -8.92944 -8.73087 -7.02305 -5.83272 -3.12643 0.72144 0.93712 1.65171 1.73808 2.60910 2.89130 2.93777 3.38927 3.44059 3.46015 4.28521 4.39031 4.53254 4.80955 4.83406 4.92983 5.10550 5.14241 5.36918 5.40438 5.65043 5.69557 5.74462 5.83131 5.89639 6.01487 6.04561 6.19808 6.25155 6.30524 6.38665 6.49213 6.72279 7.02004 7.13936 7.63739 7.81426 8.35079 9.46226 10.03854 10.37853 11.38937 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.001939 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.619846 B =14434.123075 C =15081.487261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.162 4.162 13 C -0.129 4.129 14 H 0.088 0.912 15 C 0.132 3.868 16 N -0.721 5.721 17 C 0.587 3.413 18 O -0.518 6.518 19 C -0.014 4.014 20 C -0.087 4.087 21 C -0.099 4.099 22 Cl -0.027 7.027 23 C 0.098 3.902 24 Cl 0.005 6.995 25 N -0.522 5.522 26 H 0.428 0.572 27 C -0.142 4.142 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.394 0.606 35 H 0.169 0.831 36 H 0.062 0.938 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.042 -25.129 9.825 28.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.203 4.203 13 C -0.148 4.148 14 H 0.106 0.894 15 C 0.009 3.991 16 N -0.372 5.372 17 C 0.372 3.628 18 O -0.393 6.393 19 C -0.128 4.128 20 C -0.113 4.113 21 C -0.134 4.134 22 Cl 0.001 6.999 23 C -0.047 4.047 24 Cl 0.034 6.966 25 N -0.123 5.123 26 H 0.268 0.732 27 C -0.181 4.181 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.228 0.772 35 H 0.186 0.814 36 H 0.081 0.919 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.473 -25.027 9.704 27.863 hybrid contribution 1.226 1.121 0.193 1.673 sum 8.699 -23.906 9.897 27.297 Atomic orbital electron populations 1.69654 1.05140 1.25835 1.57259 1.24779 0.95536 0.97837 1.02728 0.86190 0.78647 0.83780 0.77542 1.21654 1.21721 1.20754 1.19286 0.91043 0.84228 1.43172 0.91117 1.42410 1.05778 0.99862 1.86963 1.21506 0.95337 0.85102 0.92658 0.90671 1.23979 1.01377 0.94880 1.00079 1.22662 0.98312 0.94384 0.99460 0.89405 1.21555 0.95417 0.91476 0.90612 1.45950 1.12855 1.35330 1.43024 1.16806 0.86405 0.79723 0.79826 1.90906 1.13851 1.69785 1.64790 1.20544 0.82303 1.04309 1.05602 1.21177 0.99866 0.94892 0.95381 1.19625 0.92779 0.98603 1.02373 1.98358 1.97448 1.45123 1.58926 1.20595 0.89398 0.96757 0.97902 1.98439 1.24641 1.93940 1.79600 1.41899 1.09763 1.28618 1.32034 0.73193 1.23454 1.01158 0.96892 0.96640 0.93386 0.78029 0.90222 0.92849 0.91170 0.90628 0.77233 0.81353 0.91895 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.65 9.97 -15.06 -0.15 -6.80 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -17.21 5.40 -52.64 -0.28 -17.50 16 10 C 0.17 3.03 4.48 -67.12 -0.30 2.73 16 11 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 12 C -0.16 -2.46 7.43 -25.92 -0.19 -2.65 16 13 C -0.13 -1.52 3.75 -89.81 -0.34 -1.86 16 14 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 15 C 0.13 1.51 5.51 -4.04 -0.02 1.49 16 16 N -0.72 -6.86 5.55 -61.66 -0.34 -7.20 16 17 C 0.59 6.65 7.78 -12.92 -0.10 6.55 16 18 O -0.52 -7.84 16.88 5.18 0.09 -7.75 16 19 C -0.01 -0.13 7.06 -81.93 -0.58 -0.71 16 20 C -0.09 -0.82 10.64 -39.10 -0.42 -1.24 16 21 C -0.10 -0.88 6.66 -39.90 -0.27 -1.15 16 22 Cl -0.03 -0.23 29.12 -51.86 -1.51 -1.74 16 23 C 0.10 0.77 7.75 -16.76 -0.13 0.64 16 24 Cl 0.01 0.04 29.13 -51.86 -1.51 -1.47 16 25 N -0.52 -3.56 6.00 -6.51 -0.04 -3.59 16 26 H 0.43 1.70 8.19 -40.82 -0.33 1.37 16 27 C -0.14 -2.08 7.39 -25.92 -0.19 -2.28 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.39 9.96 7.92 -40.82 -0.32 9.64 16 30 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.01 7.84 -51.93 -0.41 0.60 16 34 H 0.39 2.61 7.60 -40.82 -0.31 2.30 16 35 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -31.73 352.34 -9.65 -41.38 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.28 Total: 8.34 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.78 Total: -5.72 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.06 Total: -55.28 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.09 Total: -7.75 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -3.02 Total: -3.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.73 -9.65 -41.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086162277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.210 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds