Wall clock time and date at job start Tue Mar 31 2020 16:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99432 * 2 1 4 4 H 1.48505 * 109.46742 * 269.99612 * 3 2 1 5 5 H 1.48498 * 109.47296 * 29.99967 * 3 2 1 6 6 H 1.48498 * 109.46991 * 150.00111 * 3 2 1 7 7 C 1.38803 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00418 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00001 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.85061 * 336.20155 * 10 9 7 12 12 C 1.53782 * 113.61107 * 107.50217 * 10 9 7 13 13 C 1.53785 * 87.08069 * 139.97984 * 12 10 9 14 14 H 1.09006 * 113.68612 * 89.12534 * 13 12 10 15 15 C 1.52997 * 113.61712 * 220.01782 * 13 12 10 16 16 N 1.46505 * 109.47212 * 272.49768 * 15 13 12 17 17 C 1.34771 * 119.99622 * 179.97438 * 16 15 13 18 18 O 1.21715 * 120.00379 * 0.02562 * 17 16 15 19 19 C 1.46542 * 119.99608 * 179.97438 * 17 16 15 20 20 C 1.37968 * 126.22383 * 179.97438 * 19 17 16 21 21 C 1.39792 * 107.12817 * 179.97438 * 20 19 17 22 22 Cl 1.73599 * 126.06136 * 180.02562 * 21 20 19 23 23 C 1.35722 * 107.87427 * 0.02562 * 21 20 19 24 24 Cl 1.73602 * 125.57986 * 179.97438 * 23 21 20 25 25 N 1.35655 * 108.83358 * 359.74413 * 23 21 20 26 26 H 0.96998 * 125.69988 * 180.26989 * 25 23 21 27 27 C 1.53781 * 87.08073 * 334.56795 * 13 12 10 28 28 H 0.96997 * 120.00975 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99961 * 0.02562 * 9 7 2 30 30 H 1.08998 * 113.61542 * 25.43429 * 12 10 9 31 31 H 1.08998 * 113.61766 * 254.53138 * 12 10 9 32 32 H 1.09002 * 109.47153 * 152.49760 * 15 13 12 33 33 H 1.09001 * 109.46832 * 32.49951 * 15 13 12 34 34 H 0.96996 * 119.99606 * 0.02562 * 16 15 13 35 35 H 1.07992 * 126.43301 * 0.02562 * 20 19 17 36 36 H 1.09003 * 113.61181 * 139.97823 * 27 13 12 37 37 H 1.08994 * 113.61519 * 270.88008 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0659 -3.5637 -0.4048 12 6 1.9993 -4.4020 1.3444 13 6 1.8482 -5.6975 0.5296 14 1 2.7982 -6.1644 0.2694 15 6 0.8452 -6.6852 1.1291 16 7 1.5265 -7.5431 2.1018 17 6 0.8362 -8.4948 2.7606 18 8 -0.3531 -8.6419 2.5471 19 6 1.5177 -9.3534 3.7332 20 6 0.9397 -10.3619 4.4764 21 6 1.9475 -10.9181 5.2696 22 17 1.7573 -12.2264 6.3947 23 6 3.1009 -10.2539 5.0041 24 17 4.6417 -10.5723 5.7378 25 7 2.8536 -9.3039 4.0678 26 1 3.5075 -8.6908 3.6971 27 6 1.2604 -4.8288 -0.5949 28 1 -0.4851 0.8399 -0.0004 29 1 0.3557 -2.3881 -0.0002 30 1 1.1210 -4.1568 1.9415 31 1 2.9273 -4.3499 1.9137 32 1 0.4225 -7.3007 0.3350 33 1 0.0465 -6.1349 1.6265 34 1 2.4741 -7.4256 2.2721 35 1 -0.0964 -10.6651 4.4497 36 1 1.5921 -5.1212 -1.5912 37 1 0.1802 -4.7003 -0.5280 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086162277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:22 Heat of formation + Delta-G solvation = 2.462458 kcal Electronic energy + Delta-G solvation = -22254.619824 eV Core-core repulsion = 18505.339048 eV Total energy + Delta-G solvation = -3749.280776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.66858 -40.64396 -39.66288 -37.92175 -37.52962 -36.16428 -35.10365 -32.45885 -32.15384 -30.72267 -28.46140 -26.45119 -25.89172 -24.06535 -22.55224 -21.95077 -21.61032 -20.78772 -20.02308 -19.00518 -17.52961 -17.29908 -16.82905 -16.59913 -16.21464 -15.88816 -15.74088 -15.54628 -15.09722 -14.97476 -14.63757 -14.46034 -14.35311 -13.43396 -13.22616 -13.05344 -13.01051 -12.93226 -12.87420 -12.66633 -12.50292 -12.20449 -12.08815 -11.99512 -11.69791 -11.56079 -11.29975 -11.03803 -10.80947 -10.30135 -10.15249 -9.40633 -8.97006 -7.94403 -5.22542 -0.00078 0.30550 1.01410 1.03514 1.47400 1.48791 1.57058 1.85487 2.09831 2.20097 2.56709 3.37481 3.58152 3.68782 3.73109 3.76064 3.92015 4.19388 4.26192 4.35945 4.40979 4.45168 4.55991 4.75929 4.96442 4.99883 5.00085 5.05305 5.15930 5.21951 5.29272 5.40776 5.52580 5.73503 5.86455 6.28070 6.36665 6.98382 7.33601 8.12740 8.33514 9.29025 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.001939 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.619846 B =14434.123075 C =15081.487261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.730 5.730 10 C 0.141 3.859 11 H 0.081 0.919 12 C -0.154 4.154 13 C -0.095 4.095 14 H 0.124 0.876 15 C 0.137 3.863 16 N -0.707 5.707 17 C 0.590 3.410 18 O -0.562 6.562 19 C -0.020 4.020 20 C -0.094 4.094 21 C -0.113 4.113 22 Cl -0.026 7.026 23 C 0.106 3.894 24 Cl 0.019 6.981 25 N -0.504 5.504 26 H 0.443 0.557 27 C -0.137 4.137 28 H 0.250 0.750 29 H 0.372 0.628 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.412 0.588 35 H 0.167 0.833 36 H 0.079 0.921 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.658 -26.402 10.083 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.373 4.373 8 H 0.097 0.903 9 N -0.368 5.368 10 C 0.032 3.968 11 H 0.099 0.901 12 C -0.195 4.195 13 C -0.114 4.114 14 H 0.142 0.858 15 C 0.014 3.986 16 N -0.358 5.358 17 C 0.377 3.623 18 O -0.441 6.441 19 C -0.134 4.134 20 C -0.121 4.121 21 C -0.147 4.147 22 Cl 0.003 6.997 23 C -0.039 4.039 24 Cl 0.048 6.952 25 N -0.107 5.107 26 H 0.286 0.714 27 C -0.176 4.176 28 H 0.059 0.941 29 H 0.203 0.797 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.248 0.752 35 H 0.184 0.816 36 H 0.097 0.903 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.191 -26.335 9.960 29.944 hybrid contribution 0.490 1.406 0.143 1.495 sum 10.681 -24.930 10.103 28.942 Atomic orbital electron populations 1.69817 1.06689 1.25982 1.59780 1.25593 0.96365 1.01247 1.04068 0.85157 0.77745 0.79596 0.77377 1.21479 1.22573 1.19228 1.19722 0.91589 0.85379 1.40564 0.90270 1.42644 1.05370 1.01262 1.87507 1.21979 0.95650 0.83858 0.95318 0.90121 1.23743 1.01151 0.96076 0.98527 1.22483 0.99498 0.92885 0.96520 0.85761 1.21344 0.94920 0.91451 0.90869 1.45736 1.13597 1.34336 1.42138 1.16971 0.85891 0.79724 0.79732 1.90888 1.15810 1.71095 1.66269 1.20118 0.83223 1.04360 1.05742 1.21283 1.00153 0.95084 0.95560 1.19694 0.93091 0.99139 1.02813 1.98357 1.97481 1.45058 1.58836 1.20652 0.89679 0.96220 0.97388 1.98451 1.23585 1.93847 1.79334 1.41782 1.09164 1.28393 1.31363 0.71440 1.23333 1.00020 0.95799 0.98497 0.94145 0.79658 0.92563 0.91267 0.90822 0.92857 0.75182 0.81558 0.90252 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.39 13.06 21.65 0.28 -59.10 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 3 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.24 -12.99 9.97 84.03 0.84 -12.16 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.73 -35.58 5.40 -320.44 -1.73 -37.32 16 10 C 0.14 4.98 4.48 45.52 0.20 5.19 16 11 H 0.08 2.75 8.10 -2.38 -0.02 2.73 16 12 C -0.15 -4.41 7.43 31.12 0.23 -4.18 16 13 C -0.09 -1.96 3.75 -10.27 -0.04 -2.00 16 14 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 15 C 0.14 2.91 5.51 86.38 0.48 3.38 16 16 N -0.71 -11.78 5.55 -467.20 -2.59 -14.38 16 17 C 0.59 12.62 7.78 86.41 0.67 13.29 16 18 O -0.56 -16.95 16.88 -4.40 -0.07 -17.02 16 19 C -0.02 -0.34 7.06 40.31 0.28 -0.06 16 20 C -0.09 -1.70 10.64 22.58 0.24 -1.46 16 21 C -0.11 -1.85 6.66 22.06 0.15 -1.70 16 22 Cl -0.03 -0.41 29.12 -2.72 -0.08 -0.49 16 23 C 0.11 1.44 7.75 83.52 0.65 2.09 16 24 Cl 0.02 0.22 29.13 -2.72 -0.08 0.14 16 25 N -0.50 -5.61 6.00 -174.51 -1.05 -6.66 16 26 H 0.44 2.05 8.19 -92.71 -0.76 1.29 16 27 C -0.14 -3.81 7.39 31.12 0.23 -3.58 16 28 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.37 19.81 7.92 -92.71 -0.73 19.08 16 30 H 0.06 1.90 7.90 -2.39 -0.02 1.88 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.41 7.84 -2.39 -0.02 1.39 16 34 H 0.41 3.96 7.60 -92.71 -0.70 3.26 16 35 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 2.10 8.08 -2.39 -0.02 2.08 16 Total: -1.00 -69.95 352.34 0.05 -69.90 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -1.05 Total: 22.72 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 4.40 Total: -5.30 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -5.09 Total: -117.45 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.07 Total: -17.02 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.16 Total: -0.35 kcal Total: -69.95 0.05 -69.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086162277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.361 kcal (2) G-P(sol) polarization free energy of solvation -69.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds