Wall clock time and date at job start Tue Mar 31 2020 16:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00179 * 2 1 4 4 H 1.48502 * 109.46874 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46762 * 299.99479 * 3 2 1 6 6 H 1.48496 * 109.47171 * 59.99587 * 3 2 1 7 7 C 1.38808 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00614 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00322 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.85103 * 23.80312 * 10 9 7 12 12 C 1.53778 * 113.61704 * 155.00107 * 10 9 7 13 13 C 1.53793 * 87.08198 * 89.19773 * 12 10 9 14 14 H 1.08998 * 113.61516 * 270.80381 * 13 12 10 15 15 C 1.53000 * 113.61361 * 139.98151 * 13 12 10 16 16 N 1.46499 * 109.46746 * 176.53151 * 15 13 12 17 17 C 1.34781 * 119.99370 * 180.02562 * 16 15 13 18 18 O 1.21708 * 120.00451 * 359.97438 * 17 16 15 19 19 C 1.46549 * 119.99418 * 180.02562 * 17 16 15 20 20 C 1.37965 * 126.22041 * 179.97438 * 19 17 16 21 21 C 1.39791 * 107.12910 * 179.73589 * 20 19 17 22 22 Cl 1.73595 * 126.06112 * 180.02562 * 21 20 19 23 23 C 1.35719 * 107.87216 * 359.97438 * 21 20 19 24 24 Cl 1.73606 * 125.58155 * 179.97438 * 23 21 20 25 25 N 1.35669 * 108.83560 * 0.02562 * 23 21 20 26 26 H 0.97001 * 125.69457 * 180.02562 * 25 23 21 27 27 C 1.53787 * 87.16976 * 25.39012 * 13 12 10 28 28 H 0.97004 * 119.99560 * 0.02562 * 1 2 3 29 29 H 0.97009 * 119.99379 * 0.02562 * 9 7 2 30 30 H 1.08994 * 113.61548 * 334.65216 * 12 10 9 31 31 H 1.09002 * 113.69192 * 203.75453 * 12 10 9 32 32 H 1.08996 * 109.46897 * 56.52793 * 15 13 12 33 33 H 1.09004 * 109.46979 * 296.53137 * 15 13 12 34 34 H 0.96993 * 120.00105 * 359.97438 * 16 15 13 35 35 H 1.08003 * 126.43518 * 359.71497 * 20 19 17 36 36 H 1.09004 * 113.60892 * 89.15869 * 27 13 12 37 37 H 1.08997 * 113.61080 * 220.05527 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 3.0651 -3.5637 0.4078 12 6 1.2595 -4.8285 0.5970 13 6 0.7225 -5.0808 -0.8219 14 1 -0.1888 -4.5275 -1.0486 15 6 0.6232 -6.5638 -1.1849 16 7 0.0272 -6.7018 -2.5160 17 6 -0.1599 -7.9264 -3.0469 18 8 0.1666 -8.9176 -2.4206 19 6 -0.7555 -8.0644 -4.3787 20 6 -1.0037 -9.2484 -5.0421 21 6 -1.5804 -8.9182 -6.2719 22 17 -2.0883 -10.0392 -7.4962 23 6 -1.6738 -7.5659 -6.3385 24 17 -2.3234 -6.6625 -7.6711 25 7 -1.1754 -7.0355 -5.1935 26 1 -1.1238 -6.0899 -4.9834 27 6 2.0006 -4.4031 -1.3437 28 1 -0.4850 0.8401 -0.0004 29 1 0.3554 -2.3880 -0.0002 30 1 0.4917 -4.5183 1.3056 31 1 1.8849 -5.6363 0.9772 32 1 -0.0007 -7.0760 -0.4525 33 1 1.6198 -7.0053 -1.1854 34 1 -0.2333 -5.9119 -3.0150 35 1 -0.7919 -10.2434 -4.6794 36 1 2.8301 -5.0937 -1.4956 37 1 1.8301 -3.7500 -2.1996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086442061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:26 Heat of formation + Delta-G solvation = 23.943420 kcal Electronic energy + Delta-G solvation = -22443.314296 eV Core-core repulsion = 18694.965004 eV Total energy + Delta-G solvation = -3748.349292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.92394 -39.62942 -38.50608 -37.24805 -36.83331 -34.93707 -33.33763 -31.63194 -30.50965 -29.66920 -27.33820 -25.17524 -24.01029 -23.11145 -21.87938 -21.20886 -20.79523 -19.60374 -18.36992 -17.39106 -16.65983 -16.17015 -15.98228 -15.24278 -15.12623 -14.88543 -14.53185 -14.21985 -14.01045 -13.75801 -13.68086 -13.36962 -12.97924 -12.42049 -12.33065 -12.19390 -12.02885 -11.84960 -11.52568 -11.28723 -11.13397 -10.93355 -10.63202 -10.51211 -10.20124 -10.00219 -9.78450 -9.61573 -9.48442 -9.27233 -8.97771 -8.67516 -7.09013 -5.89207 -3.18498 0.77739 1.01248 1.70085 1.78628 2.67343 2.95309 2.97174 3.35603 3.42023 3.43887 4.34473 4.44200 4.48433 4.86828 4.91395 4.98470 5.10874 5.18512 5.36583 5.47897 5.57167 5.71197 5.75925 5.82915 5.94172 5.97294 6.10817 6.16561 6.26990 6.44934 6.47780 6.62574 6.77643 6.93114 7.19103 7.62001 7.84761 8.29988 9.40925 9.97639 10.31610 11.33200 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.015848 B = 0.002267 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.353867 B =12346.530866 C =13830.156544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.147 4.147 13 C -0.122 4.122 14 H 0.093 0.907 15 C 0.131 3.869 16 N -0.720 5.720 17 C 0.588 3.412 18 O -0.522 6.522 19 C -0.015 4.015 20 C -0.087 4.087 21 C -0.100 4.100 22 Cl -0.028 7.028 23 C 0.099 3.901 24 Cl 0.006 6.994 25 N -0.521 5.521 26 H 0.430 0.570 27 C -0.170 4.170 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.397 0.603 35 H 0.168 0.832 36 H 0.069 0.931 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -18.043 -13.235 22.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.186 4.186 13 C -0.140 4.140 14 H 0.111 0.889 15 C 0.008 3.992 16 N -0.370 5.370 17 C 0.373 3.627 18 O -0.398 6.398 19 C -0.129 4.129 20 C -0.114 4.114 21 C -0.135 4.135 22 Cl 0.001 6.999 23 C -0.045 4.045 24 Cl 0.035 6.965 25 N -0.122 5.122 26 H 0.270 0.730 27 C -0.211 4.211 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.230 0.770 35 H 0.186 0.814 36 H 0.087 0.913 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.925 -18.425 -12.874 22.818 hybrid contribution -0.239 1.881 -0.581 1.983 sum -4.164 -16.545 -13.455 21.728 Atomic orbital electron populations 1.69669 1.05155 1.25743 1.57483 1.24770 0.95555 0.97845 1.02701 0.86100 0.78843 0.83898 0.77238 1.20456 1.21823 1.21767 1.19336 0.91170 0.83924 1.42949 0.90905 1.42181 1.05666 0.99461 1.87113 1.21080 0.95190 0.85576 0.92628 0.91864 1.23440 1.00547 0.99747 0.94912 1.22739 0.99640 0.92678 0.98976 0.88918 1.21585 0.98338 0.97400 0.81829 1.45967 1.63530 1.07246 1.20300 1.16812 0.78577 0.84005 0.83271 1.90883 1.51010 1.37308 1.60606 1.20529 1.10972 0.87057 0.94307 1.21152 1.00392 0.98353 0.91489 1.19610 1.11198 0.87998 0.94680 1.98354 1.89709 1.59625 1.52249 1.20618 1.06683 0.90091 0.87141 1.98442 1.83614 1.74321 1.40144 1.41941 1.47446 1.09858 1.12966 0.73014 1.23936 0.95621 0.99664 1.01842 0.93451 0.78147 0.91220 0.90314 0.91267 0.91014 0.76952 0.81410 0.91283 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.06 13.06 55.49 0.72 -26.33 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -16.58 5.31 -52.55 -0.28 -16.86 16 10 C 0.17 3.07 4.57 -67.03 -0.31 2.76 16 11 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 12 C -0.15 -2.16 7.39 -25.91 -0.19 -2.36 16 13 C -0.12 -1.62 3.63 -89.80 -0.33 -1.95 16 14 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 15 C 0.13 1.54 5.50 -4.04 -0.02 1.52 16 16 N -0.72 -7.54 5.55 -61.66 -0.34 -7.88 16 17 C 0.59 6.94 7.78 -12.91 -0.10 6.84 16 18 O -0.52 -7.88 16.88 5.18 0.09 -7.80 16 19 C -0.01 -0.15 7.06 -81.93 -0.58 -0.72 16 20 C -0.09 -0.87 10.64 -39.10 -0.42 -1.28 16 21 C -0.10 -0.95 6.66 -39.90 -0.27 -1.22 16 22 Cl -0.03 -0.25 29.12 -51.86 -1.51 -1.76 16 23 C 0.10 0.88 7.75 -16.76 -0.13 0.75 16 24 Cl 0.01 0.05 29.13 -51.86 -1.51 -1.46 16 25 N -0.52 -4.17 6.01 -6.51 -0.04 -4.21 16 26 H 0.43 2.45 8.19 -40.82 -0.33 2.12 16 27 C -0.17 -2.57 7.44 -25.82 -0.19 -2.76 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.38 9.56 7.90 -40.82 -0.32 9.24 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.87 7.88 -51.93 -0.41 0.46 16 34 H 0.40 3.38 7.60 -40.82 -0.31 3.06 16 35 H 0.17 1.54 8.06 -52.48 -0.42 1.11 16 36 H 0.07 0.94 7.92 -51.93 -0.41 0.53 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -30.57 352.26 -9.65 -40.21 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.29 Total: 9.63 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.77 Total: -5.48 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.06 Total: -55.28 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -3.02 Total: -3.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.57 -9.65 -40.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086442061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.155 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds