Wall clock time and date at job start Tue Mar 31 2020 16:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00179 * 2 1 4 4 H 1.48502 * 109.46874 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46762 * 299.99479 * 3 2 1 6 6 H 1.48496 * 109.47171 * 59.99587 * 3 2 1 7 7 C 1.38808 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00614 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00322 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.85103 * 23.80312 * 10 9 7 12 12 C 1.53778 * 113.61704 * 155.00107 * 10 9 7 13 13 C 1.53793 * 87.08198 * 89.19773 * 12 10 9 14 14 H 1.08998 * 113.61516 * 270.80381 * 13 12 10 15 15 C 1.53000 * 113.61361 * 139.98151 * 13 12 10 16 16 N 1.46499 * 109.46746 * 176.53151 * 15 13 12 17 17 C 1.34781 * 119.99370 * 180.02562 * 16 15 13 18 18 O 1.21708 * 120.00451 * 359.97438 * 17 16 15 19 19 C 1.46549 * 119.99418 * 180.02562 * 17 16 15 20 20 C 1.37965 * 126.22041 * 179.97438 * 19 17 16 21 21 C 1.39791 * 107.12910 * 179.73589 * 20 19 17 22 22 Cl 1.73595 * 126.06112 * 180.02562 * 21 20 19 23 23 C 1.35719 * 107.87216 * 359.97438 * 21 20 19 24 24 Cl 1.73606 * 125.58155 * 179.97438 * 23 21 20 25 25 N 1.35669 * 108.83560 * 0.02562 * 23 21 20 26 26 H 0.97001 * 125.69457 * 180.02562 * 25 23 21 27 27 C 1.53787 * 87.16976 * 25.39012 * 13 12 10 28 28 H 0.97004 * 119.99560 * 0.02562 * 1 2 3 29 29 H 0.97009 * 119.99379 * 0.02562 * 9 7 2 30 30 H 1.08994 * 113.61548 * 334.65216 * 12 10 9 31 31 H 1.09002 * 113.69192 * 203.75453 * 12 10 9 32 32 H 1.08996 * 109.46897 * 56.52793 * 15 13 12 33 33 H 1.09004 * 109.46979 * 296.53137 * 15 13 12 34 34 H 0.96993 * 120.00105 * 359.97438 * 16 15 13 35 35 H 1.08003 * 126.43518 * 359.71497 * 20 19 17 36 36 H 1.09004 * 113.60892 * 89.15869 * 27 13 12 37 37 H 1.08997 * 113.61080 * 220.05527 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 3.0651 -3.5637 0.4078 12 6 1.2595 -4.8285 0.5970 13 6 0.7225 -5.0808 -0.8219 14 1 -0.1888 -4.5275 -1.0486 15 6 0.6232 -6.5638 -1.1849 16 7 0.0272 -6.7018 -2.5160 17 6 -0.1599 -7.9264 -3.0469 18 8 0.1666 -8.9176 -2.4206 19 6 -0.7555 -8.0644 -4.3787 20 6 -1.0037 -9.2484 -5.0421 21 6 -1.5804 -8.9182 -6.2719 22 17 -2.0883 -10.0392 -7.4962 23 6 -1.6738 -7.5659 -6.3385 24 17 -2.3234 -6.6625 -7.6711 25 7 -1.1754 -7.0355 -5.1935 26 1 -1.1238 -6.0899 -4.9834 27 6 2.0006 -4.4031 -1.3437 28 1 -0.4850 0.8401 -0.0004 29 1 0.3554 -2.3880 -0.0002 30 1 0.4917 -4.5183 1.3056 31 1 1.8849 -5.6363 0.9772 32 1 -0.0007 -7.0760 -0.4525 33 1 1.6198 -7.0053 -1.1854 34 1 -0.2333 -5.9119 -3.0150 35 1 -0.7919 -10.2434 -4.6794 36 1 2.8301 -5.0937 -1.4956 37 1 1.8301 -3.7500 -2.1996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086442061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:26 Heat of formation + Delta-G solvation = 4.174643 kcal Electronic energy + Delta-G solvation = -22444.171534 eV Core-core repulsion = 18694.965004 eV Total energy + Delta-G solvation = -3749.206530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.67109 -40.66678 -39.71355 -37.92956 -37.53637 -36.12772 -35.04076 -32.43301 -32.08074 -30.70327 -28.48720 -26.43592 -25.77136 -24.18419 -23.01010 -21.97026 -21.58730 -20.55995 -19.63067 -19.28045 -17.51167 -17.19937 -16.82884 -16.67216 -16.06918 -15.92006 -15.69941 -15.61983 -15.11372 -14.79012 -14.63245 -14.57380 -14.43046 -13.76030 -13.29429 -13.02077 -12.98299 -12.93716 -12.87582 -12.66342 -12.51210 -12.13778 -12.06169 -12.00461 -11.68268 -11.49041 -11.29024 -10.94224 -10.80992 -10.29162 -10.15500 -9.41455 -9.00046 -7.96722 -5.24361 -0.00204 0.30872 1.00064 1.03112 1.47176 1.48225 1.57620 1.87184 2.09656 2.18921 2.54828 3.36495 3.57301 3.68535 3.72991 3.77915 3.88069 4.13264 4.20276 4.32964 4.39372 4.44717 4.72356 4.75968 4.94521 4.99410 5.00500 5.09316 5.16673 5.23843 5.34647 5.44548 5.53497 5.66297 5.82458 6.27653 6.34114 6.95661 7.32887 8.10358 8.32057 9.26630 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.015848 B = 0.002267 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.353867 B =12346.530866 C =13830.156544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.239 4.239 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.142 3.858 11 H 0.058 0.942 12 C -0.134 4.134 13 C -0.103 4.103 14 H 0.083 0.917 15 C 0.140 3.860 16 N -0.712 5.712 17 C 0.592 3.408 18 O -0.558 6.558 19 C -0.022 4.022 20 C -0.091 4.091 21 C -0.111 4.111 22 Cl -0.024 7.024 23 C 0.104 3.896 24 Cl 0.016 6.984 25 N -0.509 5.509 26 H 0.440 0.560 27 C -0.154 4.154 28 H 0.251 0.749 29 H 0.375 0.625 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.407 0.593 35 H 0.171 0.829 36 H 0.092 0.908 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.609 -18.751 -13.931 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.223 1.223 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.032 3.968 11 H 0.077 0.923 12 C -0.173 4.173 13 C -0.122 4.122 14 H 0.101 0.899 15 C 0.017 3.983 16 N -0.363 5.363 17 C 0.379 3.621 18 O -0.436 6.436 19 C -0.137 4.137 20 C -0.117 4.117 21 C -0.146 4.146 22 Cl 0.004 6.996 23 C -0.042 4.042 24 Cl 0.045 6.955 25 N -0.111 5.111 26 H 0.283 0.717 27 C -0.194 4.194 28 H 0.059 0.941 29 H 0.207 0.793 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.243 0.757 35 H 0.189 0.811 36 H 0.111 0.889 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.270 -19.142 -13.580 23.697 hybrid contribution -0.403 2.032 -0.396 2.109 sum -3.673 -17.110 -13.976 22.396 Atomic orbital electron populations 1.69806 1.06489 1.25951 1.59660 1.25512 0.96364 1.00941 1.03887 0.85126 0.78308 0.80078 0.76574 1.19105 1.22123 1.22257 1.19690 0.91499 0.85191 1.40736 0.90616 1.42304 1.05330 1.00545 1.87591 1.21430 0.95061 0.84919 0.95396 0.92348 1.23344 0.99986 0.98643 0.95371 1.22509 0.98390 0.93598 0.97668 0.89881 1.21417 0.98742 0.95748 0.82417 1.45853 1.62996 1.07464 1.19951 1.16910 0.77999 0.83639 0.83534 1.90866 1.52697 1.38396 1.61670 1.20212 1.11891 0.87621 0.93943 1.21286 1.00138 0.98651 0.91655 1.19689 1.11639 0.88428 0.94815 1.98354 1.89671 1.59552 1.51995 1.20699 1.06014 0.90140 0.87363 1.98451 1.83413 1.74032 1.39627 1.41867 1.46678 1.10177 1.12364 0.71738 1.23749 0.97354 0.99225 0.99085 0.94054 0.79324 0.92385 0.87491 0.91097 0.90627 0.75725 0.81114 0.88928 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.08 13.06 21.65 0.28 -56.80 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 44.70 29.55 68.60 2.03 46.73 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 7 C -0.24 -12.70 9.97 84.03 0.84 -11.87 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.86 16 9 N -0.72 -33.88 5.31 -320.18 -1.70 -35.58 16 10 C 0.14 5.04 4.57 45.58 0.21 5.25 16 11 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 12 C -0.13 -3.71 7.39 31.12 0.23 -3.48 16 13 C -0.10 -2.55 3.63 -10.26 -0.04 -2.59 16 14 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.14 2.95 5.50 86.38 0.47 3.43 16 16 N -0.71 -13.54 5.55 -467.20 -2.59 -16.14 16 17 C 0.59 13.12 7.78 86.41 0.67 13.79 16 18 O -0.56 -16.23 16.88 -4.38 -0.07 -16.30 16 19 C -0.02 -0.42 7.06 40.31 0.28 -0.13 16 20 C -0.09 -1.70 10.64 22.58 0.24 -1.46 16 21 C -0.11 -1.97 6.66 22.06 0.15 -1.83 16 22 Cl -0.02 -0.40 29.12 -2.72 -0.08 -0.48 16 23 C 0.10 1.67 7.75 83.52 0.65 2.31 16 24 Cl 0.02 0.23 29.13 -2.72 -0.08 0.15 16 25 N -0.51 -7.28 6.01 -174.50 -1.05 -8.33 16 26 H 0.44 4.18 8.19 -92.71 -0.76 3.42 16 27 C -0.15 -4.37 7.44 31.18 0.23 -4.14 16 28 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.37 18.89 7.90 -92.70 -0.73 18.15 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.11 2.38 8.10 -2.39 -0.02 2.37 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.61 7.88 -2.39 -0.02 1.59 16 34 H 0.41 6.11 7.60 -92.71 -0.70 5.40 16 35 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.09 2.23 7.92 -2.38 -0.02 2.21 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.16 352.26 0.09 -65.06 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -1.05 Total: 26.08 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 4.40 Total: -4.39 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -5.06 Total: -116.85 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.07 Total: -16.30 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.16 Total: -0.33 kcal Total: -65.16 0.09 -65.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086442061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.239 kcal (2) G-P(sol) polarization free energy of solvation -65.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds