Wall clock time and date at job start Tue Mar 31 2020 17:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08991 * 109.87577 * 2 1 4 4 C 1.54327 * 110.00949 * 238.90091 * 2 1 3 5 5 H 1.08994 * 110.72253 * 336.68205 * 4 2 1 6 6 N 1.46499 * 110.71754 * 99.95685 * 4 2 1 7 7 C 1.34780 * 120.00006 * 204.99922 * 6 4 2 8 8 O 1.21716 * 120.00125 * 0.02562 * 7 6 4 9 9 C 1.46546 * 119.99954 * 180.02562 * 7 6 4 10 10 C 1.37958 * 126.22129 * 179.68791 * 9 7 6 11 11 C 1.39788 * 107.12669 * 179.90260 * 10 9 7 12 12 Cl 1.73605 * 126.06322 * 180.11784 * 11 10 9 13 13 C 1.35719 * 107.87915 * 0.36212 * 11 10 9 14 14 Cl 1.73598 * 125.58870 * 179.75429 * 13 11 10 15 15 N 1.35669 * 108.82676 * 359.77410 * 13 11 10 16 16 H 0.96999 * 125.69327 * 179.97438 * 15 13 11 17 17 C 1.55156 * 102.94127 * 218.31899 * 4 2 1 18 18 C 1.54690 * 101.67687 * 35.33744 * 17 4 2 19 19 N 1.47029 * 109.88057 * 121.02037 * 2 1 3 20 20 C 1.36936 * 125.64574 * 298.47247 * 19 2 1 21 21 H 1.07995 * 119.99950 * 343.08883 * 20 19 2 22 22 C 1.38807 * 119.99818 * 163.08765 * 20 19 2 23 23 N 1.31620 * 120.00127 * 332.47990 * 22 20 19 24 24 Si 1.86794 * 119.99999 * 152.47562 * 22 20 19 25 25 H 1.48502 * 109.47291 * 270.00387 * 24 22 20 26 26 H 1.48504 * 109.47132 * 30.00203 * 24 22 20 27 27 H 1.48500 * 109.47362 * 150.00015 * 24 22 20 28 28 H 1.08997 * 109.47546 * 300.43431 * 1 2 3 29 29 H 1.08999 * 109.47022 * 60.43447 * 1 2 3 30 30 H 1.08999 * 109.47407 * 180.43599 * 1 2 3 31 31 H 0.97000 * 119.99972 * 25.00119 * 6 4 2 32 32 H 1.07995 * 126.43774 * 0.03503 * 10 9 7 33 33 H 1.09001 * 111.00181 * 153.57932 * 17 4 2 34 34 H 1.08997 * 111.00468 * 277.42611 * 17 4 2 35 35 H 1.09001 * 110.38924 * 204.36196 * 18 17 4 36 36 H 1.08997 * 110.23111 * 82.11336 * 18 17 4 37 37 H 0.97003 * 120.00028 * 353.98686 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0580 -0.7490 -1.2417 5 1 1.3103 -1.4472 -1.6179 6 7 2.4580 0.1970 -2.2864 7 6 2.4632 -0.1880 -3.5780 8 8 2.1352 -1.3214 -3.8766 9 6 2.8638 0.7581 -4.6229 10 6 2.9218 0.5007 -5.9771 11 6 3.3485 1.6763 -6.6017 12 17 3.5874 1.8989 -8.3067 13 6 3.5482 2.6111 -5.6383 14 17 4.0884 4.2389 -5.9066 15 7 3.2569 2.0649 -4.4310 16 1 3.3158 2.5184 -3.5756 17 6 3.2917 -1.5108 -0.6894 18 6 2.8220 -1.8732 0.7393 19 7 2.0299 -0.7125 1.1849 20 6 1.8024 -0.3540 2.4868 21 1 1.4565 0.6422 2.7199 22 6 2.0164 -1.2709 3.5067 23 7 1.9027 -2.5601 3.2672 24 14 2.4656 -0.6751 5.2191 25 1 3.9425 -0.5744 5.3366 26 1 1.8583 0.6595 5.4541 27 1 1.9532 -1.6367 6.2281 28 1 -0.3634 0.5205 0.8860 29 1 -0.3633 0.5071 -0.8939 30 1 -0.3634 -1.0276 0.0078 31 1 2.7191 1.1004 -2.0485 32 1 2.6805 -0.4328 -6.4634 33 1 3.4920 -2.4074 -1.2760 34 1 4.1680 -0.8635 -0.6566 35 1 3.6801 -2.0212 1.3950 36 1 2.2021 -2.7694 0.7163 37 1 1.5852 -2.8668 2.4035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088781823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:44 Heat of formation + Delta-G solvation = -1.540483 kcal Electronic energy + Delta-G solvation = -23376.465693 eV Core-core repulsion = 19627.011336 eV Total energy + Delta-G solvation = -3749.454357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.69667 -40.84295 -39.27608 -37.92705 -37.53220 -35.92624 -34.07663 -32.34430 -32.26125 -30.96474 -29.82933 -26.77854 -25.73473 -24.13126 -22.31477 -21.94720 -21.74103 -21.51379 -20.20249 -19.27073 -17.74612 -17.41446 -16.71176 -16.18435 -16.06530 -15.88750 -15.52232 -15.47856 -15.18870 -14.95225 -14.68754 -14.51074 -14.42568 -13.57920 -13.47280 -13.06230 -13.01432 -12.90979 -12.63568 -12.53813 -12.49987 -12.27135 -12.18388 -11.99644 -11.88080 -11.71494 -11.54286 -11.40451 -10.53073 -10.31842 -10.17000 -9.42329 -9.02918 -8.29006 -5.32375 -0.01618 0.29651 1.00269 1.02858 1.59251 1.66479 1.76650 1.83499 2.06489 2.14511 2.65908 3.20782 3.38185 3.60634 3.66460 3.71569 3.73609 4.07179 4.17533 4.31002 4.42589 4.44072 4.46829 4.69162 4.78642 4.89456 4.95615 4.99193 5.04440 5.18923 5.19504 5.28158 5.44302 5.71317 5.83740 6.31563 6.33099 6.89609 6.94636 7.71007 8.28595 9.03164 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.002482 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.653185 B =11278.316552 C =11915.022062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.151 3.849 3 H 0.056 0.944 4 C 0.154 3.846 5 H 0.088 0.912 6 N -0.699 5.699 7 C 0.596 3.404 8 O -0.556 6.556 9 C -0.020 4.020 10 C -0.090 4.090 11 C -0.111 4.111 12 Cl -0.024 7.024 13 C 0.108 3.892 14 Cl 0.020 6.980 15 N -0.506 5.506 16 H 0.441 0.559 17 C -0.130 4.130 18 C 0.149 3.851 19 N -0.613 5.613 20 C -0.332 4.332 21 H 0.065 0.935 22 C -0.081 4.081 23 N -0.950 5.950 24 Si 1.117 2.883 25 H -0.286 1.286 26 H -0.270 1.270 27 H -0.298 1.298 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.410 0.590 32 H 0.169 0.831 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.025 0.975 36 H 0.004 0.996 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 14.424 -20.950 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.074 0.926 4 C 0.049 3.951 5 H 0.106 0.894 6 N -0.350 5.350 7 C 0.383 3.617 8 O -0.434 6.434 9 C -0.134 4.134 10 C -0.116 4.116 11 C -0.146 4.146 12 Cl 0.004 6.996 13 C -0.038 4.038 14 Cl 0.048 6.952 15 N -0.109 5.109 16 H 0.284 0.716 17 C -0.169 4.169 18 C 0.023 3.977 19 N -0.340 5.340 20 C -0.460 4.460 21 H 0.083 0.917 22 C -0.276 4.276 23 N -0.593 5.593 24 Si 0.942 3.058 25 H -0.213 1.213 26 H -0.195 1.195 27 H -0.225 1.225 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.247 0.753 32 H 0.186 0.814 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.043 0.957 36 H 0.021 0.979 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.825 13.402 -19.515 24.161 hybrid contribution -0.455 0.842 -0.895 1.310 sum 4.370 14.244 -20.410 25.270 Atomic orbital electron populations 1.22093 0.96914 1.00467 1.00990 1.21246 0.93148 0.95461 0.85738 0.92628 1.21749 0.96362 0.90783 0.86253 0.89386 1.45641 1.68009 1.16218 1.05102 1.16963 0.77127 0.86059 0.81520 1.90885 1.49709 1.20449 1.82331 1.20021 1.13936 0.84582 0.94846 1.21278 1.01270 0.98615 0.90456 1.19667 1.13779 0.94624 0.86543 1.98356 1.95805 1.97008 1.08395 1.20664 1.08046 0.89128 0.85951 1.98449 1.87661 1.13850 1.95207 1.41815 1.50717 1.09931 1.08401 0.71576 1.23044 0.97930 1.00816 0.95106 1.21340 0.93257 0.89963 0.93173 1.44794 1.57656 1.30247 1.01263 1.19943 1.46129 0.97271 0.82686 0.91715 1.27056 1.00441 0.93706 1.06445 1.70864 1.47678 1.15603 1.25136 0.82816 0.76681 0.74854 0.71472 1.21280 1.19500 1.22541 0.93970 0.90904 0.94994 0.75291 0.81352 0.90373 0.90007 0.95652 0.97869 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 9.15 71.98 0.66 -4.48 16 2 C 0.15 5.44 3.48 45.34 0.16 5.60 16 3 H 0.06 1.82 7.72 -2.39 -0.02 1.81 16 4 C 0.15 4.83 2.85 46.18 0.13 4.96 16 5 H 0.09 3.08 7.26 -2.39 -0.02 3.06 16 6 N -0.70 -15.91 5.17 -440.98 -2.28 -18.19 16 7 C 0.60 14.72 7.78 86.41 0.67 15.39 16 8 O -0.56 -18.24 16.53 -4.40 -0.07 -18.31 16 9 C -0.02 -0.38 7.06 40.31 0.28 -0.09 16 10 C -0.09 -1.74 10.64 22.58 0.24 -1.50 16 11 C -0.11 -1.96 6.66 22.06 0.15 -1.81 16 12 Cl -0.02 -0.40 29.12 -2.72 -0.08 -0.48 16 13 C 0.11 1.63 7.75 83.52 0.65 2.27 16 14 Cl 0.02 0.25 29.13 -2.72 -0.08 0.17 16 15 N -0.51 -6.80 6.01 -174.51 -1.05 -7.84 16 16 H 0.44 3.39 8.19 -92.71 -0.76 2.63 16 17 C -0.13 -4.45 6.76 31.91 0.22 -4.23 16 18 C 0.15 6.80 5.29 86.78 0.46 7.26 16 19 N -0.61 -29.07 3.02 -668.72 -2.02 -31.10 16 20 C -0.33 -17.78 9.62 84.03 0.81 -16.97 16 21 H 0.07 3.42 7.96 -2.91 -0.02 3.40 16 22 C -0.08 -4.51 5.09 84.86 0.43 -4.08 16 23 N -0.95 -57.80 12.94 21.65 0.28 -57.52 16 24 Si 1.12 50.11 30.00 68.60 2.06 52.16 16 25 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 28 H 0.04 1.60 8.02 -2.39 -0.02 1.58 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.41 6.62 7.49 -92.71 -0.69 5.93 16 32 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.03 1.28 7.96 -2.39 -0.02 1.26 16 36 H 0.00 0.18 6.80 -2.39 -0.02 0.16 16 37 H 0.26 15.83 6.02 -92.71 -0.56 15.27 16 Total: -1.00 -68.64 343.40 1.50 -67.13 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -0.11 Total: 11.64 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 4.85 Total: 2.33 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -5.07 Total: -114.65 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.07 Total: -18.31 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.06 Total: 52.16 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.16 Total: -0.31 kcal Total: -68.64 1.50 -67.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088781823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.593 kcal (2) G-P(sol) polarization free energy of solvation -68.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds