Wall clock time and date at job start Tue Mar 31 2020 16:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48498 * 109.47371 * 240.00453 * 3 2 1 5 5 H 1.48503 * 109.46722 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47203 * 119.99820 * 3 2 1 7 7 C 1.38810 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00246 * 197.35376 * 7 2 1 9 9 N 1.36945 * 119.99610 * 17.35758 * 7 2 1 10 10 C 1.46919 * 120.63468 * 27.68228 * 9 7 2 11 11 C 1.53185 * 108.77820 * 126.39383 * 10 9 7 12 12 C 1.53034 * 109.31303 * 54.63285 * 11 10 9 13 13 H 1.09004 * 109.46334 * 178.61262 * 12 11 10 14 14 N 1.46500 * 109.46025 * 58.65863 * 12 11 10 15 15 C 1.34777 * 120.00242 * 84.92772 * 14 12 11 16 16 O 1.21638 * 119.99934 * 0.02562 * 15 14 12 17 17 C 1.47152 * 120.00350 * 180.02562 * 15 14 12 18 18 N 1.30567 * 125.52829 * 179.97438 * 17 15 14 19 19 C 1.30656 * 115.93082 * 180.02562 * 18 17 15 20 20 C 1.34443 * 115.73960 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 125.45986 * 179.97438 * 20 19 18 22 22 S 1.71071 * 109.07363 * 359.72867 * 20 19 18 23 23 C 1.53035 * 109.54135 * 298.63673 * 12 11 10 24 24 H 1.09003 * 109.52640 * 301.39757 * 23 12 11 25 25 O 1.42905 * 109.50019 * 181.31216 * 23 12 11 26 26 C 1.46922 * 120.62614 * 207.68721 * 9 7 2 27 27 H 0.97000 * 120.00650 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58423 * 6.60284 * 10 9 7 29 29 H 1.09000 * 109.70410 * 246.25734 * 10 9 7 30 30 H 1.09006 * 109.49574 * 294.68406 * 11 10 9 31 31 H 1.09000 * 109.50117 * 174.58685 * 11 10 9 32 32 H 0.97000 * 120.00450 * 264.93039 * 14 12 11 33 33 H 1.07999 * 122.13105 * 180.02562 * 19 18 17 34 34 H 0.96702 * 113.99941 * 180.16283 * 25 23 12 35 35 H 1.09001 * 109.59334 * 113.82024 * 26 9 7 36 36 H 1.09001 * 109.58920 * 353.39074 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2234 0.2784 9 7 1.3723 -2.3609 -0.3549 10 6 0.2279 -2.3340 -1.2758 11 6 0.5010 -3.3033 -2.4301 12 6 0.8191 -4.6887 -1.8632 13 1 0.9897 -5.3863 -2.6833 14 7 -0.3086 -5.1551 -1.0528 15 6 -1.3504 -5.7757 -1.6412 16 8 -1.3540 -5.9489 -2.8452 17 6 -2.4834 -6.2437 -0.8272 18 7 -3.5438 -6.8544 -1.2827 19 6 -4.4383 -7.1879 -0.3908 20 6 -4.1479 -6.8570 0.8795 21 17 -5.1527 -7.1771 2.2586 22 16 -2.6264 -6.0761 0.9199 23 6 2.0747 -4.6093 -0.9919 24 1 2.9089 -4.2391 -1.5879 25 8 2.3885 -5.9091 -0.4878 26 6 1.8194 -3.6547 0.1788 27 1 -0.4851 0.8400 0.0004 28 1 0.0985 -1.3254 -1.6684 29 1 -0.6756 -2.6394 -0.7482 30 1 1.3496 -2.9451 -3.0130 31 1 -0.3797 -3.3652 -3.0694 32 1 -0.3057 -5.0174 -0.0926 33 1 -5.3528 -7.6970 -0.6569 34 1 3.1736 -5.9332 0.0762 35 1 1.0471 -4.0694 0.8266 36 1 2.7401 -3.5176 0.7460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090428553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:17 Heat of formation + Delta-G solvation = -11.805063 kcal Electronic energy + Delta-G solvation = -24089.220185 eV Core-core repulsion = 20341.364429 eV Total energy + Delta-G solvation = -3747.855756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 5.28 seconds Orbital eigenvalues (eV) -40.41430 -39.53131 -37.87766 -37.17848 -35.52221 -34.23230 -31.98994 -30.79354 -30.00367 -28.72721 -26.53864 -25.30933 -22.89026 -22.28281 -21.77219 -20.08790 -19.37025 -18.79677 -17.39576 -17.07495 -16.55462 -16.10490 -15.61579 -15.23636 -14.99944 -14.44789 -14.43112 -14.17099 -14.07266 -13.78051 -13.35941 -12.81455 -12.57198 -12.50083 -12.27505 -12.12259 -11.75445 -11.25998 -11.25115 -10.93001 -10.79908 -10.49066 -10.47876 -10.30355 -10.01798 -9.91714 -9.74302 -9.73043 -9.52689 -9.19402 -8.83316 -8.57680 -6.85628 -5.92754 -3.37379 -0.13876 0.46853 1.15943 1.73256 2.10878 2.88037 3.17878 3.30714 3.37837 3.38148 4.24096 4.34819 4.44769 4.64755 4.84944 5.19177 5.22282 5.36018 5.47113 5.57550 5.59778 5.84589 5.94164 6.10094 6.34889 6.41363 6.53579 6.56722 6.72161 7.14398 7.18294 7.51100 7.56129 7.65893 7.83226 8.16401 8.29133 9.04814 9.67058 10.21678 11.15431 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.003618 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.399896 B = 7737.271888 C = 8631.029157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.008 3.992 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.586 5.586 10 C 0.170 3.830 11 C -0.156 4.156 12 C 0.168 3.832 13 H 0.086 0.914 14 N -0.692 5.692 15 C 0.593 3.407 16 O -0.503 6.503 17 C 0.011 3.989 18 N -0.394 5.394 19 C 0.047 3.953 20 C -0.210 4.210 21 Cl 0.012 6.988 22 S 0.244 5.756 23 C 0.075 3.925 24 H 0.072 0.928 25 O -0.571 6.571 26 C 0.117 3.883 27 H 0.257 0.743 28 H 0.092 0.908 29 H 0.021 0.979 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.401 0.599 33 H 0.187 0.813 34 H 0.376 0.624 35 H 0.021 0.979 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 -13.258 3.573 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.191 4.191 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.044 3.956 11 C -0.196 4.196 12 C 0.064 3.936 13 H 0.104 0.896 14 N -0.345 5.345 15 C 0.374 3.626 16 O -0.377 6.377 17 C -0.265 4.265 18 N -0.109 5.109 19 C -0.113 4.113 20 C -0.360 4.360 21 Cl 0.040 6.960 22 S 0.498 5.502 23 C 0.014 3.986 24 H 0.090 0.910 25 O -0.376 6.376 26 C -0.011 4.011 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.237 0.763 33 H 0.204 0.796 34 H 0.222 0.778 35 H 0.038 0.962 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.575 -13.059 2.693 14.097 hybrid contribution -0.254 0.616 0.866 1.093 sum -4.829 -12.443 3.559 13.813 Atomic orbital electron populations 1.70008 1.05316 1.25967 1.52903 1.25038 0.95268 0.98517 1.00288 0.86354 0.78951 0.83145 0.78198 1.20880 1.21559 1.20825 1.19111 0.92736 0.84628 1.42692 0.91521 1.43999 1.35902 1.00866 1.50227 1.20815 0.88455 0.98629 0.87695 1.22634 1.01949 0.94384 1.00622 1.20985 0.82959 0.96836 0.92839 0.89602 1.45770 1.19202 1.57808 1.11703 1.16545 0.80715 0.78763 0.86585 1.90844 1.78122 1.55849 1.12929 1.27722 0.99644 1.05537 0.93571 1.66796 1.00002 1.09547 1.34579 1.21937 1.00995 1.02590 0.85790 1.26617 1.01767 1.12447 0.95152 1.98391 1.65772 1.93919 1.37904 1.84294 1.09676 1.49038 1.07212 1.22766 0.95983 0.83108 0.96759 0.91036 1.86478 1.50824 1.30087 1.70177 1.21559 0.98622 0.87761 0.93134 0.93346 0.88969 0.96122 0.90928 0.91539 0.76291 0.79589 0.77764 0.96174 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 11.19 55.49 0.62 -23.95 16 2 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 3 Si 0.90 20.53 29.59 -169.99 -5.03 15.50 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.26 -6.62 9.58 -15.06 -0.14 -6.76 16 8 H 0.07 1.64 7.89 -52.49 -0.41 1.22 16 9 N -0.59 -13.16 2.99 -172.32 -0.52 -13.68 16 10 C 0.17 3.74 5.05 -3.72 -0.02 3.72 16 11 C -0.16 -2.88 5.77 -26.62 -0.15 -3.03 16 12 C 0.17 2.83 2.47 -67.89 -0.17 2.66 16 13 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 14 N -0.69 -11.27 4.15 -54.93 -0.23 -11.50 16 15 C 0.59 10.25 7.77 -12.64 -0.10 10.15 16 16 O -0.50 -10.16 16.73 5.24 0.09 -10.08 16 17 C 0.01 0.17 7.45 -14.47 -0.11 0.06 16 18 N -0.39 -5.95 10.59 -11.50 -0.12 -6.07 16 19 C 0.05 0.55 11.21 -19.39 -0.22 0.33 16 20 C -0.21 -2.34 6.95 29.39 0.20 -2.14 16 21 Cl 0.01 0.11 29.30 -51.86 -1.52 -1.41 16 22 S 0.24 2.91 22.30 -107.50 -2.40 0.51 16 23 C 0.07 1.17 3.36 -26.61 -0.09 1.08 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 25 O -0.57 -7.78 13.21 -35.23 -0.47 -8.25 16 26 C 0.12 2.10 5.84 -3.71 -0.02 2.08 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.09 2.33 6.04 -51.93 -0.31 2.01 16 29 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.40 6.17 6.01 -40.82 -0.25 5.92 16 33 H 0.19 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.38 3.53 9.08 45.56 0.41 3.94 16 35 H 0.02 0.37 6.64 -51.93 -0.34 0.02 16 36 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -30.34 331.43 -8.41 -38.75 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -2.94 Total: 6.88 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -0.90 Total: 8.29 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.25 Total: -55.19 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.38 Total: -18.33 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.40 Total: 0.51 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.52 Total: -1.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.34 -8.41 -38.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090428553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.950 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.28 seconds